BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01850.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475014 jgi|Araly1|475014|fgenesh2_kg.2__144__AT1G63290.1 850 0.0
Ahg924628 jgi|Araly1|924628|scaffold_200189.1 828 0.0
Ahg924633 jgi|Araly1|924633|scaffold_200194.1 268 4e-71
Ahg902899 jgi|Araly1|902899|Al_scaffold_0003_27 267 2e-70
Ahg907080 jgi|Araly1|907080|Al_scaffold_0002_161 254 1e-66
Ahg924627 jgi|Araly1|924627|scaffold_200188.1 104 1e-21
> Ahg475014 jgi|Araly1|475014|fgenesh2_kg.2__144__AT1G63290.1
Length=900
Score = 850 bits (460), Expect = 0.0
Identities = 606/677 (90%), Gaps = 8/677 (1%)
Strand=Plus/Plus
Query 55 GTGTCGCCGAAAATAGCACCGTCGATGCTGTCATCGGACTTCGCAAATCTAGCGGCGGAG 114
||||| ||||| || || ||||||||| ||||||||||||| |||||||| |||||||||
Sbjct 28 GTGTCACCGAAGATCGCTCCGTCGATGTTGTCATCGGACTTTGCAAATCTTGCGGCGGAG 87
Query 115 GCCAATCGGATGATCGATTTGGGCGCCAACTGGCTTCACATGGATATTATGGACGGGCAT 174
|| || |||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 88 GCTAAGCGGATGATCGATTTAGGCGCCAATTGGCTTCACATGGACATTATGGACGGGCAT 147
Query 175 TTTGTCCCTAATCTTACGATTGGTGCTCCTGTCATCGAGAGTTTGCGAAAGCACACTAAT 234
||||| || ||||| |||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 148 TTTGTTCCGAATCTAACGATTGGTGCTCCTGTCATCGAGAGTTTGAGGAAGCACACAAAT 207
Query 235 GCATATCTTGATTGCCACCTT-ATGGTGACGAACCCCATGGATTACGTTGCA-CAGATGG 292
||||||||||||||||| ||| ||||||||||||||||||||||||| || | |||||||
Sbjct 208 GCATATCTTGATTGCCA-CTTAATGGTGACGAACCCCATGGATTACG-TGGATCAGATGG 265
Query 293 CTAAAGCTGGGGCTTCTGGTTTCACATTCCACGTCGAGGTGGCCCAAGATAATTGGCAAC 352
||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||||||
Sbjct 266 CTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTTGAGGTGGCCAAAGAGAATTGGCAAG 325
Query 353 AACTTGTCGAGAAGATTAAGTCTACTGGGATGAGACCAGGCGTGGCTCTAAAGCCTGGAA 412
||||||| || |||||||||||| |||||||||| ||||| |||||||||||||||||||
Sbjct 326 AACTTGTGGAAAAGATTAAGTCTGCTGGGATGAGGCCAGGTGTGGCTCTAAAGCCTGGAA 385
Query 413 CACCTGTTGAACAAGTCTATCCTCTGGTTGAAGGGACAACTCCGGTTGAAATGGTTCTTG 472
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 386 CACCTGTTGAACAAGTCTATCCTCTGGTTGAAGGTACAAATCCGGTTGAAATGGTTCTTG 445
Query 473 TGATGACTGTAGAACCTGGATTTGGAGGCCAGAAGTTTATGCCTGACATGATGGACAAGG 532
|||||||||| || |||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 446 TGATGACTGTGGAGCCTGGATTTGGAGGCCAGAAATTCATGCCCAACATGATGGACAAGG 505
Query 533 TCCGGGCATTGAGGCAAAAA-TACCCAACACTTGATATTCAGGTGGATGGCGGCTTAGGC 591
|||||||||||||| || || |||||||||||||||||| ||||||| || ||||||||
Sbjct 506 TCCGGGCATTGAGG-AACAAGTACCCAACACTTGATATTGAGGTGGACGGTGGCTTAGGT 564
Query 592 CCTTCAACGATCGACACAGCGGCTGCAGCAGGCGCCAACTGTATTGTTGCTGGAAGTTCA 651
||||| || ||||| ||||||||||||| || ||||||||||| || || ||||||||
Sbjct 565 CCTTCCACAATCGATGCAGCGGCTGCAGCTGGGGCCAACTGTATCGTCGCAGGAAGTTCG 624
Query 652 GTGTTTGGAGCTCCGGAGCCAGGAGATGTCATCTCCCTTCTGAGGACCAGTGTTGAGAAA 711
|||||||||||||| ||||| || |||||||| |||||| || || |||||||| ||||
Sbjct 625 GTGTTTGGAGCTCCTGAGCCTGGGGATGTCATATCCCTTTTGTGGGCCAGTGTTAAGAAG 684
Query 712 GCCCAACCCA-CCACTT 727
|| || || | ||||||
Sbjct 685 GCGCAGCC-ATCCACTT 700
> Ahg924628 jgi|Araly1|924628|scaffold_200189.1
Length=727
Score = 828 bits (448), Expect = 0.0
Identities = 601/676 (89%), Gaps = 6/676 (1%)
Strand=Plus/Plus
Query 55 GTGTCGCCGAAAATAGCACCGTCGATGCTGTCATCGGACTTCGCAAATCTAGCGGCGGAG 114
||||| ||||| || || ||||||||| ||||||||||||| |||||||| || ||||||
Sbjct 32 GTGTCACCGAAGATCGCTCCGTCGATGTTGTCATCGGACTTTGCAAATCTTGCTGCGGAG 91
Query 115 GCCAATCGGATGATCGATTTGGGCGCCAACTGGCTTCACATGGATATTATGGACGGGCAT 174
|| || |||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 92 GCTAAGCGGATGATCGATTTAGGCGCCAATTGGCTTCACATGGACATTATGGACGGGCAT 151
Query 175 TTTGTCCCTAATCTTACGATTGGTGCTCCTGTCATCGAGAGTTTGCGAAAGCACACTAAT 234
||||| || ||||| |||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 152 TTTGTTCCGAATCTAACGATTGGTGCTCCTGTCATCGAGAGTTTGAGGAAGCACACAAAT 211
Query 235 GCATATCTTGATTGCCACCTT-ATGGTGACGAACCCCATGGATTACGTTGCA-CAGATGG 292
||||||||||||||||| ||| ||||| ||||||||||||||||||| || | || ||||
Sbjct 212 GCATATCTTGATTGCCA-CTTAATGGTTACGAACCCCATGGATTACG-TGGATCAAATGG 269
Query 293 CTAAAGCTGGGGCTTCTGGTTTCACATTCCACGTCGAGGTGGCCCAAGATAATTGGCAAC 352
||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||||||
Sbjct 270 CTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTTGAGGTGGCCAAAGAGAATTGGCAAG 329
Query 353 AACTTGTCGAGAAGATTAAGTCTACTGGGATGAGACCAGGCGTGGCTCTAAAGCCTGGAA 412
||||||| || |||||||||||| |||||||||| ||||| |||||||||||||||||||
Sbjct 330 AACTTGTGGAAAAGATTAAGTCTGCTGGGATGAGGCCAGGTGTGGCTCTAAAGCCTGGAA 389
Query 413 CACCTGTTGAACAAGTCTATCCTCTGGTTGAAGGGACAACTCCGGTTGAAATGGTTCTTG 472
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 390 CACCTGTTGAACAAGTCTATCCTCTGGTTGAAGGTACAAATCCGGTTGAAATGGTTCTTG 449
Query 473 TGATGACTGTAGAACCTGGATTTGGAGGCCAGAAGTTTATGCCTGACATGATGGACAAGG 532
|||||||||| || ||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 450 TGATGACTGTGGAGCCTGGATTTGGTGGCCAGAAGTTCATGCCCAACATGATGGACAAGG 509
Query 533 TCCGGGCATTGAGGCAAAAA-TACCCAACACTTGATATTCAGGTGGATGGCGGCTTAGGC 591
|||||||||||||| || || || ||||||||||||||| ||||||| || ||||||||
Sbjct 510 TCCGGGCATTGAGG-AACAAGTATCCAACACTTGATATTGAGGTGGACGGTGGCTTAGGT 568
Query 592 CCTTCAACGATCGACACAGCGGCTGCAGCAGGCGCCAACTGTATTGTTGCTGGAAGTTCA 651
||||| || ||||| ||||||||||||| || ||||||||||| || || ||||||||
Sbjct 569 CCTTCCACAATCGATGCAGCGGCTGCAGCTGGGGCCAACTGTATCGTCGCAGGAAGTTCG 628
Query 652 GTGTTTGGAGCTCCGGAGCCAGGAGATGTCATCTCCCTTCTGAGGACCAGTGTTGAGAAA 711
|||||||||||||| ||||| || |||||||| ||| || || || |||||||| ||||
Sbjct 629 GTGTTTGGAGCTCCTGAGCCTGGGGATGTCATATCCTTTTTGTGGGCCAGTGTTAAGAAG 688
Query 712 GCCCAACCCACCACTT 727
|| || ||| ||||||
Sbjct 689 GCGCAGCCCTCCACTT 704
> Ahg924633 jgi|Araly1|924633|scaffold_200194.1
Length=432
Score = 268 bits (145), Expect = 4e-71
Identities = 187/207 (90%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 236 CATATCTTGATTGCCACCTT-ATGGTGACGAACCCCATGGATTACGTTGCA-CAGATGGC 293
|||||||||||||||| ||| ||||| ||||||||||||||||||| || | || |||||
Sbjct 1 CATATCTTGATTGCCA-CTTAATGGTTACGAACCCCATGGATTACG-TGGATCAAATGGC 58
Query 294 TAAAGCTGGGGCTTCTGGTTTCACATTCCACGTCGAGGTGGCCCAAGATAATTGGCAACA 353
|||||||||||| |||||||||||||| ||||| ||||||||| |||| ||||||||| |
Sbjct 59 TAAAGCTGGGGCGTCTGGTTTCACATTGCACGTTGAGGTGGCCAAAGAGAATTGGCAAGA 118
Query 354 ACTTGTCGAGAAGATTAAGTCTACTGGGATGAGACCAGGCGTGGCTCTAAAGCCTGGAAC 413
|||||| || || ||||||||| ||||||||| ||||| ||||||||||||||||||||
Sbjct 119 ACTTGTGGAAAATATTAAGTCTGTTGGGATGAGGCCAGGTGTGGCTCTAAAGCCTGGAAC 178
Query 414 ACCTGTTGAACAAGTCTATCCTCTGGT 440
|||||||||||||||||||||||||||
Sbjct 179 ACCTGTTGAACAAGTCTATCCTCTGGT 205
Score = 196 bits (106), Expect = 2e-49
Identities = 153/175 (87%), Gaps = 5/175 (3%)
Strand=Plus/Plus
Query 484 GAA-CCTGGATTTGGAGGCCAGAAGTTTATGCCTGACATGATGGACAAGGTCCGGGCATT 542
||| ||| ||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 209 GAAGCCTAGATTTGGTGGCCAGAAGTTCATGCCCAACATGATGGACAAGGTCCGGGCATT 268
Query 543 GAGGCAAAAA-TACCCAACACTTGATATTCAGGTGGATGGCGGCTTAGGCCCTT-CAACG 600
|||| || || |||||||||||||||||| ||||||| |||||||||||||||| || |
Sbjct 269 GAGG-AACAAGTACCCAACACTTGATATTGAGGTGGACGGCGGCTTAGGCCCTTGCA-CA 326
Query 601 ATCGACACAGCGGCTGCAGCAGGCGCCAACTGTATTGTTGCTGGAAGTTCAGTGT 655
||||| ||||||||||||| || ||||||||||| || || |||||||| ||||
Sbjct 327 ATCGATGCAGCGGCTGCAGCTGGGGCCAACTGTATCGTCGCAGGAAGTTCGGTGT 381
> Ahg902899 jgi|Araly1|902899|Al_scaffold_0003_27
Length=636
Score = 267 bits (144), Expect = 2e-70
Identities = 173/187 (93%), Gaps = 1/187 (1%)
Strand=Plus/Plus
Query 165 GGACGGGCATTTTGTCCCTAATCTTACGATTGGTGCTCCTGTCATCGAGAGTTTGCGAAA 224
|||||||||||||||||| ||||| || |||||| |||||||||||||||||||||||||
Sbjct 207 GGACGGGCATTTTGTCCCGAATCTAACCATTGGTCCTCCTGTCATCGAGAGTTTGCGAAA 266
Query 225 GCACACTAATGCATATCTTGATTGCCACCTTATGGTGACGAACCCCATGGATTACGTTGC 284
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 267 GCACACAAATGCATATCTTGATTGCCACCTTATGGTGACGAACCCCATCGATTACGTGGA 326
Query 285 ACAGATGGCTAAAGCTGGGGCTTCTGGTTTCACATTCCACGTCGAGGTGGCCCAAGATA- 343
||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 327 ACACATGGCTAAAGCTGGTGCTTCTGGTTTCACATTCCACGTCGAGGTGGCCAAAGGTAT 386
Query 344 ATTGGCA 350
||| |||
Sbjct 387 ATTAGCA 393
Score = 198 bits (107), Expect = 6e-50
Identities = 120/126 (95%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 372 GTCTACTGGGATGAGACCAGGC-GTGGCTCTAAAGCCTGGAACACCTGTTGAACAAGTCT 430
|||| |||||||||| ||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 465 GTCTGCTGGGATGAGGCCA-GCTGTGGCTCTAAAGCCTGGAACACCTGTCGAACAAGTCT 523
Query 431 ATCCTCTGGTTGAAGGGACAACTCCGGTTGAAATGGTTCTTGTGATGACTGTAGAACCTG 490
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 ATCCTCTGGTTGAAGGAACAACTCCGGTTGAAATGGTTCTTGTGATGACTGTAGAACCTG 583
Query 491 GATTTG 496
||||||
Sbjct 584 GATTTG 589
> Ahg907080 jgi|Araly1|907080|Al_scaffold_0002_161
Length=189
Score = 254 bits (137), Expect = 1e-66
Identities = 172/189 (91%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 289 ATGGCTAAAGCTGGGGCTTCTGGTTTCACATTCCACGTCGAGGTGGCCCAAGATAATTGG 348
||||||||||||||||| |||||||||||||| ||||| ||||||||| |||| ||||||
Sbjct 1 ATGGCTAAAGCTGGGGCGTCTGGTTTCACATTGCACGTTGAGGTGGCCAAAGAGAATTGG 60
Query 349 CAACAACTTGTCGAGAAGATTAAGTCTACTGGGATGAGACCAGGCGTGGCTCTAAAGCCT 408
||| ||||||| || || ||||||||| ||||||||| ||||| |||||||||||||||
Sbjct 61 CAAGAACTTGTGGAAAATATTAAGTCTGTTGGGATGAGGCCAGGTGTGGCTCTAAAGCCT 120
Query 409 GGAACACCTGTTGAACAAGTCTATCCTCTGGT-T-GAAGGGACAACTCCGGTTGAAATGG 466
|||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||||||
Sbjct 121 GGAACACCTGTTGAACAAGTCTATCCTCTGGTATTGAAGGTACAAATCCGGTTGAAATGG 180
Query 467 TTCTTGTGA 475
|||||||||
Sbjct 181 TTCTTGTGA 189
> Ahg924627 jgi|Araly1|924627|scaffold_200188.1
Length=270
Score = 104 bits (56), Expect = 1e-21
Identities = 78/89 (88%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 55 GTGTCGCCGAAAATAGCACCGTCGATGCTGTCATCGGACTTCGCAAATCTAGCGGCGGAG 114
||||| ||||| || || ||||||||| ||||||||||||| |||||||| | |||||||
Sbjct 32 GTGTCACCGAAGATCGCTCCGTCGATGTTGTCATCGGACTTTGCAAATCTTGAGGCGGAG 91
Query 115 GCCAATCGGATGATCGATTTGGGCGCCAA 143
|| || |||||||||||||| ||||||||
Sbjct 92 GCTAAGCGGATGATCGATTTAGGCGCCAA 120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5