BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01860.1
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477329 jgi|Araly1|477329|fgenesh2_kg.3__30__AT3G01860.1 1092 0.0
> Ahg477329 jgi|Araly1|477329|fgenesh2_kg.3__30__AT3G01860.1
Length=908
Score = 1092 bits (591), Expect = 0.0
Identities = 822/922 (89%), Gaps = 61/922 (7%)
Strand=Plus/Plus
Query 91 tctctctctttcc---tctcatctttgcttcttcgtcttccatctctctatgccttttag 147
||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||
Sbjct 42 TCTCTCTCTTTCCTGATCCCATCTTTGCTTCTTCGTCTTCCATTTCTCTATGCCTTTTAG 101
Query 148 attctctAAACCCATATCTTCACT-TCTTCTCCTAAACCACAGGAATTCTCTCTCTTTCA 206
||||||||||||||||||||| || |||| | || || | || || |
Sbjct 102 ATTCTCTAAACCCATATCTTCCCTCTCTT-T-CT---CC-C---AA------CT-AAAC- 144
Query 207 catcatcatcatcatcatATGGGTTCGTGTGTCTCCTCTTCTCAAAGCAAGAGCTCATCC 266
|| || |||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 145 CA-CA--ATCATCATCATATGGGTTCGTGTGTCTCCTCTTCTCAAAGCAAGCGCTCCTCC 201
Query 267 GCCTCTGATTCCGTCGTGAAGCTTGCCTCTTTCATCTCTAAACCAGACTCCACACCGCCC 326
||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| | ||
Sbjct 202 GCCTCTGATTCCGTCGTTAAGCTTGCCTCTTTCATCTCTAAACCCGACACCACATCACCT 261
Query 327 CTCAAGACTGACGTCATGATCACTTCCTCCACCATCAACGGCAACCCTCCCATC-GATTC 385
|||||||||||||||||||| |||||||||||||||||||| | |||||||| | |||||
Sbjct 262 CTCAAGACTGACGTCATGATTACTTCCTCCACCATCAACGGGATCCCTCCCA-CAGATTC 320
Query 386 CGGTCGTTGGGATTCAGGTA-ACAAAGAGGATATGATATTTTTCGATTCACGGGGGTGGC 444
|||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 321 CGGTCGCCGGGATTCAGGTAGA-AAAGAGGAAATGATATTTTTCGATTCACGGGGGTGGC 379
Query 445 TTGATTCCGACTGCGATGATGATTTCATGAGCGTTGGTGGTGAATTTACGCCGTCGCGAG 504
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 380 TTGATTCCGACTGTGATGATGATTTCATGAGCGTTGATGGTGAATTTACGCCGTCGCGAG 439
Query 505 GAACAACACCGGTGCATCACAAATTCTGTGACCAAACTCCTCACCAAGGAGAGGAGAACA 564
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 440 GAACAACACCGGTGCATCACAAATTCTGTGACCAAACTCCTCA--A-GGAGAGGAGAA-A 495
Query 565 AACACGGagaagaagaagaagaagCGTCTCCTACCGATAACAAGAAGAGGCTCCTCGAAC 624
||| | | |||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 496 AAC-C--AT--GAAGAAGAAGAACCGTCTCCTACAGATAACAAGAAGAGGCTCCTCGAAC 550
Query 625 TCTTTAAAGAGACACAAGACGAAGAGGATGAAGAGGAAGAAGATTACGTGGCAGAAGGCA 684
||||| |||||||||||||||| | | |||||||||||||||| ||||||||||||||||
Sbjct 551 TCTTTGAAGAGACACAAGACGA-G-G-ATGAAGAGGAAGAAGACTACGTGGCAGAAGGCA 607
Query 685 AAGCAAGAGCATGTCTCTGGATAAGAACACCTGTTAGATCTTCTGCGCCGGCCACTCCTT 744
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 608 AAGCAAGAACATGTCTCTGGATAAGAACACCTGCTAGATCTTCTGCGCCGGCCACTCCTT 667
Query 745 ATAATAACAACAAAGAAAGACAGCAAAAATTCAAGAGAGTGAGATCAGCTGCTCTTGGTC 804
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 668 ATAATAACAACAAAGAAAGACAGCAAAAATTCAAGAGAGTCAGATCGGCTGCTCACGGTC 727
Query 805 GCTGCGTTCCGCGTTTGGTTTCCTGTAGTAGCTTCACTGATCGGCGACGGAATATGATGA 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 GCTGCGTTCCGCGTTTGGTTTCCTGTAGTAGCTTCACTGATCGGCGACGGAATATGATGA 787
Query 865 CTAGTCATGCCCCTATTGACGTCCAACGCTaaagaagacaaaaagaaagaaaaaaaaaaC 924
| |||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 788 GTGGTCATGCCCCCATTGACGTCCAACGCTAAAGAAGACAAAAA-AA-GAAAAAAAA--- 842
Query 925 TTTAAATAATATTAAATTACTATACATTATGTTTCTTAATTTGTCCTTGATTGTTGTTTT 984
|| | ||||||||||||||||||||||||||||| | |||||||||
Sbjct 843 TT-A---------------CTATACATTATGTTTCTTAATTTGTCCTTTACTGTTGTTTT 886
Query 985 CCAAAGGATCGAACAATGTTGT 1006
|| |||||||||||||||||||
Sbjct 887 CCTAAGGATCGAACAATGTTGT 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42087700368
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5