BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01870.1
Length=2095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927569 jgi|Araly1|927569|scaffold_300026.1 2752 0.0
Ahg340259 jgi|Araly1|340259|fgenesh1_pg.C_scaffold_3000022 1033 0.0
> Ahg927569 jgi|Araly1|927569|scaffold_300026.1
Length=1793
Score = 2752 bits (1490), Expect = 0.0
Identities = 1695/1793 (95%), Gaps = 18/1793 (1%)
Strand=Plus/Plus
Query 126 TTAACTAAAGAA-AGAGTAGAATGCATTCATCTATTGGAAAAGCCTTTGAACTTTTCTGT 184
||||||||| || ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 2 TTAACTAAA-AAGAGAGTAGAATGCAATCATCTATTGGAAAAGCCTTTCAACTTTTCTGT 60
Query 185 TTTCTTGTTATTTTAATTGTTAACCATGTGTGTTGGATCCAGGCACAAGGCAACTCCGAT 244
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 TTTCTTGTTATTTTAATTGTTAACCATGTGTGTTGGATCCAAGCACAAGGCAACTCCGAT 120
Query 245 GTGAATTCTACAGCAGTGAGCAGATCTACGGATACATTTCTTTCT-TCTACAAGCTTACC 303
||||| || || |||||||||||||| ||||| ||||||||| | ||||||||||||||
Sbjct 121 GTGAA-TC-CCA-CAGTGAGCAGATCTGCGGATCCATTTCTTT-TGTCTACAAGCTTACC 176
Query 304 TGTGGAGACAGCCTTCACGTTTCCATCGGCTTTACCTGTCATCCCTTCGGGTGGTGGAAA 363
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 177 TGTGGAGACGGCCTTCACGTTTCCATCTGCTTTACCTGTTATCCCTTCGGGTGGTGGAAA 236
Query 364 TTTTGGGAAAGGAAGGATAGATCTCGGAGGTCTTGAGGTGATCCAAGTCTCCATCTCAAC 423
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 237 TTTTGGGAAAGGAAGGATAGATCTGGGAGGTCTTGAGGTGATCCAAGTCTCCATCTCAAC 296
Query 424 CTCAACATCACAAAGAGTATGGAGGACATACGAGGGAGGTCCCGACAACATGGGGCTCTC 483
|||||||||||| |||||||||||||||||||||||||| ||| ||| |||||| ||| |
Sbjct 297 CTCAACATCACAGAGAGTATGGAGGACATACGAGGGAGGGCCCAACAGCATGGGACTCAC 356
Query 484 TATCTTCCAACCAATCAATCTTCCTCCCAGCTTCTCCACTCTTGGCTTCTATGGGCAACC 543
|||||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 357 TATCTTCCAACCTATCAATCTTCCTCCCAGCTTTTTCACTCTTGGCTTCTATGCGCAACC 416
Query 544 CAACAACCGCCTGCTTTTTGGGTGGGTTCTTGCTGCAAGAGACGTGTCTGGAAATAGCTT 603
||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 417 CAACAACCGTCTGCTTTTCGGCTGGGTTCTTGCTGCAAGAGACGTCTCTGGAAATAGCTT 476
Query 604 GAGGCCACCCGTTGACTACATTCAAGTCATAAACACTACATCAATGAATATCAACCAAGA 663
|||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||
Sbjct 477 GAGGCCACCCGTTGGCTACGTTGAAGTCATAAACACTACATCAATGAATATCAACCAAGA 536
Query 664 AGGGGCTGCttttttttGGCAGCCCCTATGTCCCAATGGATATCAAGCGGTTGGTCTATA 723
|||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 537 CGGGGCTGCTTATTTTTGGCAGCCCCTATGTCCCGATGGGTATCAAGCGGTTGGTCTATA 596
Query 724 TGTCACTACTTCTCCTATAAAGCCATCTTTAAGTCAAGAATCTATAAGCTGCGTTCGATC 783
|||||||||||||||| | ||||| || |||||||||||||| |||||||||||||||||
Sbjct 597 TGTCACTACTTCTCCTCTGAAGCCCTCGTTAAGTCAAGAATCCATAAGCTGCGTTCGATC 656
Query 784 CGATCTTACGGAACAGAGTGAAACCGATACATGGGTTTGGGGGACAGAA-GAAATGACTC 842
|||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||
Sbjct 657 CGATCTTACGGAACAGAGTGAAACGGATACATGGGTTTGGGGGACA-AACGAAATGACTC 715
Query 843 TGTCTAGTTTGAGACCGGCCAACAGAGGAACAGAAGCAACAGGTGTACACACAGGGACAT 902
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 716 TTTCTAGTTTGAGACCGGCCAACAGAGGAACAGAAGCAACAGGTGTGCACACAGGGACAT 775
Query 903 TCAGCTGCCAGCCATTGAA-CATCCCT---CCTCCCCCTCCTCTGTTTTGCTTGAAAAAC 958
|||||||||||||| | || | ||||| ||||| ||||||||||| ||||||||||||
Sbjct 776 TCAGCTGCCAGCCACT-AAGCGTCCCTCCCCCTCCTCCTCCTCTGTTCTGCTTGAAAAAC 834
Query 959 ACAAAATTTGACTTGTCTAGCATGCCAAGCCATAATCAAACTACCGTTTTGTTTCAATCG 1018
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 835 ACAAAATTTGACTTGTCTAGCATGCCAAGCCATAACCAAACTAGCGTTTTGTTTCAATCG 894
Query 1019 TATTCTCCTTGGATATATTTGCATCCAGATGAAGATTTTATTTCTTCCTCTGTCGACTGG 1078
||||||||||||||||||||||||||||||||||||||| || ||||||||||| | |||
Sbjct 895 TATTCTCCTTGGATATATTTGCATCCAGATGAAGATTTTCTTCCTTCCTCTGTCAATTGG 954
Query 1079 TTTTTCTCCAATGGTGCCCTGTTATTCCAGAAAGGCAACGAATCCAACCCCGTCCCTGTG 1138
||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 955 TTTTTTTCTAATGGTGCCCTGTTATTCCAGAGAGGCAACGAATCCAACCCCGTCCCTGTG 1014
Query 1139 CAACCGGACGGTTCAAACCTTCCGCAGGGCGGTTCGGATGATGGTTTATTCTGGTTAGAC 1198
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1015 CAGCCGGACGGTTCAAACCTTCCGCAAGGCGGTTCGGATGATGGTTTATTCTGGTTAGAC 1074
Query 1199 TATCCGGCT-GATAAGAACGCAAAGGAATGGGTTAAGAGGGGAGACTTAGGACACACGAA 1257
||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1075 TATCCGG-TGGATAAGAACGCAAAGGAATGGGTTAAGAGGGGAGACTTAGGAAACACGAA 1133
Query 1258 AGTGTATCTACACATCAAACCAATGTTTGGAGGCACTTTCACTGACATTGTCGTGTGGAT 1317
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1134 AGTGTATCTACACATCAAACCAATGTTTGGAGGCACTTTCACTGACATCGTCGTGTGGAT 1193
Query 1318 ATTCTACCCTTTCAACGGTAACGCCCGCCTCAAGTTTTTATTCTTCAAGAGCCTGTCGCT 1377
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1194 ATTCTACCCTTTCAACGGCAACGCCCGCCTCAAGTTTTTATTCATCAAGAGCCTGTCACT 1253
Query 1378 GGGGGATATCGGCGAACATATTGGAGACTGGGAACATGTTACGTTGCGCATCAGCAACTT 1437
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1254 GGGGGATATTGGCGAACATATTGGAGACTGGGAACATGTTACGCTGCGCATCAGCAACTT 1313
Query 1438 CAACGGAGAGTTATGGCGAGCATACTTCTCTGAGCACAGTGGGGGAACTCTAGTGGAGGC 1497
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1314 CAACGGAGAGTTATGGCGCGCATACTTCTCTGAGCACAGTGGGGGAACTTTAGTGGAGGC 1373
Query 1498 ATGCGATCTTGAGTTTCAAGGTGGAAACAAACTTGTGAGCTACTCGTCTCTTCACGGACA 1557
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1374 ATGCGATCTAGAGTTTCAAGGTGGAAACAAACCTGTGAGCTACTCGTCTCTTCACGGACA 1433
Query 1558 CGCAATGTTTTCAAAACCAGGACTTGTGTTGCAAGGCGATGACGGAAACGGCATAAGGAA 1617
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 CGCAATGTTCTCAAGACCAGGACTTGTGTTGCAAGGCGATGACGGAAACGGCATAAGGAA 1493
Query 1618 CGACATGGCAAGAAGTAACAAATTCTTTGACGCAGGTGTTGCTTATGAGCTGGTTGCAGG 1677
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 CGATATGGCAAGAAGTGACAAATTCTTTGACGCAGGTGTTGCTTATGAGCTGGTTGCAGG 1553
Query 1678 ACCGGGGATTCAGGAGCCACCGTGGCTCAACTATTTCAGGAAATGGGGACCACTTGTCCC 1737
|||||| ||| ||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1554 ACCGGGCATTGAGGAGCCACCGTGGCTCAACTATTTTAGGAAATGGGGACCATTTGTCCG 1613
Query 1738 ACATGACATTCAAAAGAACCTTGAAGGTATCGCAAAGTCATTGCCGGGACTTTTGCGGAA 1797
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1614 ACATGACATTCAGAAGAACCTTGATGGTATCGCAAAGTCATTGCCGGGACTTTTGCGGAA 1673
Query 1798 AAAATTCAG-AAATCTGATTAACAAAATCCCTCGTGAAGTGCTTGAAGAAGATGGTCCCA 1856
||||||||| |||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1674 AAAATTCAGAAAAT-TTATTAACAAAATGCCTCGTGAAGTGCTTGAAGAAGATGGTCCCA 1732
Query 1857 CTGGACCCAAAGTCAAAAGGTCTTGGACCGGTGATGACTAATTTTTCATTCAT 1909
|||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1733 CTGGACCCAAAGTCAAAAGGTCTTGGACCGCTGATGACTAAGTTTTCATTCAT 1785
> Ahg340259 jgi|Araly1|340259|fgenesh1_pg.C_scaffold_3000022
Length=1773
Score = 1033 bits (559), Expect = 0.0
Identities = 1148/1427 (80%), Gaps = 61/1427 (4%)
Strand=Plus/Plus
Query 334 TTTACCT-GTCATCCCTTCGGGTGGTGGAAATTTTGGGAAAGGAAGGATAGATCTCGGAG 392
||| ||| || || ||||| | ||||||||||||||| ||| |||| || ||| | ||||
Sbjct 201 TTTGCCTAGT-ATGCCTTCCGATGGTGGAAATTTTGGCAAAAGAAGCATTGATTTGGGAG 259
Query 393 GTCTTGAGGTGATC-CAAGTCTCCATCTCAACCTCAACATCACAAAGAGTATGGAGGACA 451
|||||||||| | | ||| |||| ||||||| |||||||||||| ||||| ||||| ||
Sbjct 260 GTCTTGAGGTTA-CTCAACTCTCTATCTCAAACTCAACATCACACAGAGTGTGGAGAACT 318
Query 452 TACGAGGGAGGTCCCG-ACAACATGGG-GCTC-TCTATCTTCCAACC-AATCAATCTTCC 507
|| || ||||| ||| | |||||||| | || | |||||| |||| | | ||||||
Sbjct 319 TATGAAGGAGG-GCCGAATAACATGGGAG-TCAGC-ATCTTCGAACCTACT-GCTCTTCC 374
Query 508 TCCCAGCTTCTCCACTCTTGGCTTCTATGGGCAACCCAACAACCGCCTGCTTTTTGGGTG 567
|| | ||| | | ||||||||||||| |||||||||||||| | |||||| || ||
Sbjct 375 TCGTAACTTTTTAAAACTTGGCTTCTATGCACAACCCAACAACCGACAGCTTTTCGGTTG 434
Query 568 GGTTCTTGCT-GCAAGAGACGT-GTCTGGAAATAGCTTGAGGCCACCCGTTGACTACATT 625
| |||||| | |||| |||||| | | |||| || || || ||||| || ||||||| |
Sbjct 435 GATTCTTG-TCGCAAAAGACGTAG-CCGGAAGTAATTTAAGACCACCAGTCGACTACACT 492
Query 626 CAAGTCATAAACACTACATCAATGA--A-TATCAACCAAGAAGGGGCTGCttttttttGG 682
|||| ||||||||||||| ||| | ||| || ||||| ||| | || | |||||||
Sbjct 493 GAAGTTGGAAACACTACATCACTGATTAGTATTAAACAAGATGGGCCAGCGTATTTTTGG 552
Query 683 CAGCCCCTATGTCCCAATGGATATCAAGCGGTTGGTCTATATGTCACTACTTCTCCTATA 742
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 553 CAGCCCCTATGTCCTAATGGGTATCAAGCGGTTGGTCTATATGTCACTACTTCTCCTGTG 612
Query 743 AAGCCATCTTTAAGTCAAGAATCTAT-AAGCTGCGTTCGATCCGATCTTACGGAACAGAG 801
||||| ||||| | ||||| ||||| || ||||||| |||| || ||||| ||| | ||
Sbjct 613 AAGCCCTCTTTGGGACAAGATTCTATTAA-CTGCGTTAGATCTGAACTTACAGAAAAAAG 671
Query 802 TGAAACCGATACATGGGTTTGGGGGACAGAAGAAATGACTCTGTCTAGTTTGAGACCGGC 861
|||| | ||||||||||| ||| ||| | |||| |||||| | |||||||||||||||||
Sbjct 672 TGAAGCTGATACATGGGTATGGAGGATAAAAGATATGACTATTTCTAGTTTGAGACCGGC 731
Query 862 CAAC-AGAGGAACAGAAGCAACAGGTGTACACACAGGGACATTCAGCTGCCAG--CCATT 918
|| | |||||| ||||||||||||||| |||||||||||||||| | | | || |
Sbjct 732 CA-CGAGAGGAGTAGAAGCAACAGGTGTGTACACAGGGACATTCAGTTTCAAAAACC-TA 789
Query 919 GAACATCCCTCCTCCCCCTCCTCTGTTTTGCTTGAAAAACACAAAATTTGACTTGTCTAG 978
||| || | ||||| ||| | | || ||||||||||| | ||||||||||||||| ||
Sbjct 790 AAACTTCTC-CCTCCTCCT--T-TATTCTGCTTGAAAAATATAAAATTTGACTTGTCGAG 845
Query 979 CATGCCAAGCCATAATCAAACTACCGTTTTGTTTCAATCGTATTCTCCTTGGATATATTT 1038
|||||||||| | || ||||||| |||||||||||| | ||||||||||||||||||||
Sbjct 846 CATGCCAAGCGAAAACCAAACTAGAGTTTTGTTTCAAACATATTCTCCTTGGATATATTT 905
Query 1039 GCATCCAGATGAAGATTTTATTTCTTCCTCTGTCGACTGGTTTTTCTCCAATGGTGCCCT 1098
|| ||| | ||||||||| || ||||||| ||||| ||| ||||| | |||||||| |
Sbjct 906 ACACCCACAAGAAGATTTTCTTCCTTCCTCCGTCGATTGGGTTTTCGCTAATGGTGCGTT 965
Query 1099 GTTATTCCAGAAAGGCAACGAATCCAACCCCGTCCCTG-TGCAACCGGACGGTTCAAACC 1157
| ||| ||||||||| ||||||||||||||||||| || | || || | ||||||||||
Sbjct 966 GCTATACCAGAAAGGAAACGAATCCAACCCCGTCC-TGATACATCCAAATGGTTCAAACC 1024
Query 1158 TTCCGCAGGGCGGTTCGGA-TGATGGTTTATTCTGGTTAGACTATCCGG-CTGAT-AAGA 1214
|||| || || |||| | | ||||| ||||| |||||||| |||| | | ||| || |
Sbjct 1025 TTCCACAAGGTGGTT-GCAATGATGACTTATTTTGGTTAGATTATCTAGTC-GATGAA-A 1081
Query 1215 ACGCAA-AGGAATGGGTTAAGAGGGGAGACTTAGG-ACACACGAAAGTGTATCTACACAT 1272
| |||| || || | ||||||||||||| ||||| | ||| || ||||||||||||||
Sbjct 1082 AGGCAAGAGAAAAAG-TTAAGAGGGGAGATTTAGGGAG-CACTAAGGTGTATCTACACAT 1139
Query 1273 CAAACCAATGTTTGGAGGC-ACTTTCACTGACATTGTCGTGTGGATATTCTACCCTT-TC 1330
|||||||||||||||| | |||||||| || ||||| || ||| |||||| ||| | |
Sbjct 1140 TAAACCAATGTTTGGAG-CTACTTTCACAGATATTGTTGTATGGCTATTCTTCCCCTAT- 1197
Query 1331 AACGGTAACGCCCGCCTCAAGTTTTTATTCTTCAAGAGCCTGTCGCTGGGGGATATCGGC 1390
||||| || || | | || ||||||||| |||||||| ||||||| || |||| |||
Sbjct 1198 AACGGAAATGCACATTTGAAATTTTTATTCATCAAGAGCATGTCGCTAGGAAATATTGGC 1257
Query 1391 GAACATATTGGAGACTGGGAACATGTTACGTTGCGCATCAGCAACTTCAACGGAGAGTTA 1450
|| ||| |||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 1258 GAGCATGTTGGAGACTGGGAACATGTTACATTGCGCATCAGCAACTTCAATGGTGAGTTA 1317
Query 1451 TGGCGAGCATACTTCTCTGAGCACAGTGGGGGAACTCTAGTGGAGGCATGCGATCTTGAG 1510
||||| | ||||| ||||| |||||||| |||||| ||||||| ||||||||||| |||
Sbjct 1318 TGGCGTGTTTACTTTTCTGAACACAGTGGAGGAACTTTAGTGGATGCATGCGATCTAGAG 1377
Query 1511 TT--T-CAAGGTGGAAACAAACTTGTGAGC-TACTCGTCTCTTCACGGACACGCAATGTT 1566
|| | |||||||||||||||| || || || |||||||| || || || ||||||||
Sbjct 1378 TTCATACAAGGTGGAAACAAACCAGT-AGTATATTCGTCTCTCCATGGCCATGCAATGTT 1436
Query 1567 TTCAAAACCAGGACTTGTGTTGCAAGGCGATGACGG-AAACG-GCA-TAAGGAACGACAT 1623
|| ||||| ||| | ||||||||||||| | ||| ||| | | | |||||||||||||
Sbjct 1437 CTCCAAACCTGGAGTCGTGTTGCAAGGCG--G-CGGCAAAAGTGGAATAAGGAACGACAT 1493
Query 1624 GGCAAGAAGTAACAAATTCTTTGACGCAGGTGTTGCTTATGA-GCTGGTTGCAGGACCGG 1682
||||||||| ||||||||||||||||| || ||| ||||| | || |||| || ||||
Sbjct 1494 GGCAAGAAGCGACAAATTCTTTGACGCAAGTATTGGATATGAAG-TGATTGCGGGGCCGG 1552
Query 1683 G-GATTCAGGAGCCACCGTGGCTCAACTATTTCAGGAAATGGGGACC 1728
| | | |||||||||||||| |||||||| ||||||||||||||
Sbjct 1553 GCG-TGGTTGAGCCACCGTGGCTGAACTATTTTAGGAAATGGGGACC 1598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78808716905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5