BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01880.1
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340259 jgi|Araly1|340259|fgenesh1_pg.C_scaffold_3000022 2512 0.0
Ahg927569 jgi|Araly1|927569|scaffold_300026.1 1129 0.0
> Ahg340259 jgi|Araly1|340259|fgenesh1_pg.C_scaffold_3000022
Length=1773
Score = 2512 bits (1360), Expect = 0.0
Identities = 1629/1757 (93%), Gaps = 25/1757 (1%)
Strand=Plus/Plus
Query 1 ATGCAACTCTTGTA-TGAAACCTACTTAAAATTTCTATTGttttttgtttttCTATTTGT 59
|||||| ||||| | |||||||||| | |||| |||||||||||||||| |||||||||
Sbjct 1 ATGCAATTCTTG-ATTGAAACCTACCTCAAATCTCTATTGTTTTTTGTTCCTCTATTTGT 59
Query 60 TAAGCAATTGTCATGGGCAGAAACTGGAACTAACCCT-TTGACCAACATTTCCTACGTAA 118
|||||| ||||||||||| |||||||||||||| ||| |||||||||| |||| | ||||
Sbjct 60 TAAGCAGTTGTCATGGGCTGAAACTGGAACTAA-CCTCTTGACCAACAGTTCCAATGTAA 118
Query 119 ATTCTTTAGGGTATCCATTCAAATATCCTTATCTTTCGTCTAATGGTTTACCGGTGGAAA 178
|||||||||| ||| ||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 119 ATTCTTTAGGATATACATTCAAATATCCATATCTTTTGTCTAATGGTTTACCGGTGGAAA 178
Query 179 CAAGC-TTTAAATTTCCTAGTCCTTTGCCTAGTATGCCTTCCGATGGTGGAAATTTTGGC 237
||| | ||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 179 CAA-CGTTTAAATCTCCTAGTCTTTTGCCTAGTATGCCTTCCGATGGTGGAAATTTTGGC 237
Query 238 AAAAGAAGCATTGATATGGGAGGTCTTGAGGTTACTCAAATCTCTATCTCAAACTCAACA 297
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 238 AAAAGAAGCATTGATTTGGGAGGTCTTGAGGTTACTCAACTCTCTATCTCAAACTCAACA 297
Query 298 TCACACAGAGTGTGGAGAACTTATGAAGGAGGGCCGGATAACATGGGAGTCAGCATCTTT 357
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 298 TCACACAGAGTGTGGAGAACTTATGAAGGAGGGCCGAATAACATGGGAGTCAGCATCTTC 357
Query 358 GAACCAACTACTATTCCTCGTAA-TTTCTTCAAACTTGGCTTCTATGCACAACCTAACAA 416
||||| ||| || |||||||||| ||| || ||||||||||||||||||||||| |||||
Sbjct 358 GAACCTACTGCTCTTCCTCGTAACTTT-TTAAAACTTGGCTTCTATGCACAACCCAACAA 416
Query 417 CCGACAGCTTTTTGGTTGGATTCTTGTTGCAAAAGACGTATCGGGAAGTAATTTAAGACC 476
|||||||||||| |||||||||||||| |||||||||||| | |||||||||||||||||
Sbjct 417 CCGACAGCTTTTCGGTTGGATTCTTGTCGCAAAAGACGTAGCCGGAAGTAATTTAAGACC 476
Query 477 ACCAGTCGACTACACTGAAGTTGGAAACACTACAACATTG-CT--TATCAAACAAGAGGG 533
|||||||||||||||||||||||||||||||||| || || | ||| |||||||| ||
Sbjct 477 ACCAGTCGACTACACTGAAGTTGGAAACACTACATCACTGATTAGTATTAAACAAGATGG 536
Query 534 GCCTGCATATTTTTGGCAGCCCCTATGTCCTAATGGATATCATGCGGTTGGTCTATATGT 593
||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 537 GCCAGCGTATTTTTGGCAGCCCCTATGTCCTAATGGGTATCAAGCGGTTGGTCTATATGT 596
Query 594 CACTACTTCTCCTATGAAGCCCTCTTTGGGACAAAATTCTA-TAAGCTGTGTTCGATCTG 652
||||||||||||| |||||||||||||||||||| |||||| ||| ||| ||| ||||||
Sbjct 597 CACTACTTCTCCTGTGAAGCCCTCTTTGGGACAAGATTCTATTAA-CTGCGTTAGATCTG 655
Query 653 ATCTCACAGAACAGAGTGAAGCCGATACATGGGTATGGAGGATAAAAGATATGACTATTT 712
| || |||||| | |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 656 AACTTACAGAAAAAAGTGAAGCTGATACATGGGTATGGAGGATAAAAGATATGACTATTT 715
Query 713 CTAGTTTGAGACCGGCCACGAGAGGAGTAGAGGCGACAGGTGTGTTCACAGGGACATTCA 772
||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||
Sbjct 716 CTAGTTTGAGACCGGCCACGAGAGGAGTAGAAGCAACAGGTGTGTACACAGGGACATTCA 775
Query 773 GCTGCAAACAA-CT-AAACTTTCTTCCTCATCCCCCTCCTTTATTCTGCTTAAAAAATAC 830
| | |||| || || |||| ||| ||| | | ||||||||||||||||| |||||||
Sbjct 776 GTTTCAAA-AACCTAAAAC-TTC-TCC-C-T---CCTCCTTTATTCTGCTTGAAAAATAT 827
Query 831 AAAATTTGACTTGTCAAGCATGCCAAGCGAAAATCAAACTAGAGTTTTGTTTAAAACGTA 890
||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||| ||
Sbjct 828 AAAATTTGACTTGTCGAGCATGCCAAGCGAAAACCAAACTAGAGTTTTGTTTCAAACATA 887
Query 891 TTCTCCTTGGATATATTTACACCCAAAAGAAGATTTCCTTCCTTCCTCTGTCAATTGGGT 950
||||||||||||||||||||||||| |||||||||| ||||||||||| ||| |||||||
Sbjct 888 TTCTCCTTGGATATATTTACACCCACAAGAAGATTTTCTTCCTTCCTCCGTCGATTGGGT 947
Query 951 TTTCGCTAACGGTGCCTTGCTACACAAGAAAGGAAACGAATCCATCCCGGTCCCGATACA 1010
||||||||| ||||| |||||| || |||||||||||||||||| ||| |||| ||||||
Sbjct 948 TTTCGCTAATGGTGCGTTGCTATACCAGAAAGGAAACGAATCCAACCCCGTCCTGATACA 1007
Query 1011 TCCAAATGGTTCAAACCTTCCACAAGGAGGTTGCAATGATGACTTGTTTTGGTTAGATTA 1070
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1008 TCCAAATGGTTCAAACCTTCCACAAGGTGGTTGCAATGATGACTTATTTTGGTTAGATTA 1067
Query 1071 TCTAGTCGATAAAAAGGCTAGAGAAAAGGTTAAGAGGGGAGATTTAGAGAGCACTAAGGT 1130
|||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1068 TCTAGTCGATGAAAAGGCAAGAGAAAAAGTTAAGAGGGGAGATTTAGGGAGCACTAAGGT 1127
Query 1131 GTATCTACACATCAAACCAATGTTTGGAGCTACTTTCACAGATATTGTAGTATGGCTATT 1190
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1128 GTATCTACACATTAAACCAATGTTTGGAGCTACTTTCACAGATATTGTTGTATGGCTATT 1187
Query 1191 CTTTCCCTATAACGGAAATGCACATTTAAAATTTTTGTTTATCAAGAGCCTGTCGCTAGG 1250
||| ||||||||||||||||||||||| |||||||| || ||||||||| ||||||||||
Sbjct 1188 CTTCCCCTATAACGGAAATGCACATTTGAAATTTTTATTCATCAAGAGCATGTCGCTAGG 1247
Query 1251 AAATATTGGCGAGCATGTTGGAGACTGGGAACACGTTACATTACGCATCAGCAACTTCAA 1310
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1248 AAATATTGGCGAGCATGTTGGAGACTGGGAACATGTTACATTGCGCATCAGCAACTTCAA 1307
Query 1311 TGGTGAGTTATGGCGTGTTTACTTTTCTGAACACAGTGGAGGAACTTTAGTGGATGCATG 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 TGGTGAGTTATGGCGTGTTTACTTTTCTGAACACAGTGGAGGAACTTTAGTGGATGCATG 1367
Query 1371 CGATCTAGAGTTCATGCAAGGTGGAAACAAACCAGTAGTATATTCGTCTCTTCATGGGCA 1430
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1368 CGATCTAGAGTTCATACAAGGTGGAAACAAACCAGTAGTATATTCGTCTCTCCATGGCCA 1427
Query 1431 TGCAATGTTCTCCAAACCTGGAGTCGTGTTGCAAGGTGGCGGCAAAAGTGGAATAAGGAA 1490
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1428 TGCAATGTTCTCCAAACCTGGAGTCGTGTTGCAAGGCGGCGGCAAAAGTGGAATAAGGAA 1487
Query 1491 CGACATGGCAAGAAGCGACAAATGCTTTGACGCAGGTATTGGATATGAAGTGATTGCGGG 1550
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1488 CGACATGGCAAGAAGCGACAAATTCTTTGACGCAAGTATTGGATATGAAGTGATTGCGGG 1547
Query 1551 ACCTGGCGTGGTTGAGCCACCGTGGCTGAATTATTTTAGGAAATGGGGACCTCGAGTCCA 1610
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1548 GCCGGGCGTGGTTGAGCCACCGTGGCTGAACTATTTTAGGAAATGGGGACCTCGAGTCCA 1607
Query 1611 TTACAGGATTGACATA-TTTCTCAACTCTGTCGCAAAGATTTTGCCCATCTTTTTACGGA 1669
||||| ||||||| | |||||||||||||| || |||||||||||||||||||||||||
Sbjct 1608 TTACAACATTGACA-AGTTTCTCAACTCTGTAGCTAAGATTTTGCCCATCTTTTTACGGA 1666
Query 1670 AAGGTTTGCGAAAACTCATCAACAAAATTCCTTTAGAAATGCGGGGTCAAGATGGTCCAA 1729
||||||||||||||||||| |||||||||||||||||| ||| |||||| |||||||||
Sbjct 1667 AAGGTTTGCGAAAACTCATAAACAAAATTCCTTTAGAAGTGCTTGGTCAAAATGGTCCAA 1726
Query 1730 CTGGTCCCAAAGTTAAG 1746
|||||||||||||||||
Sbjct 1727 CTGGTCCCAAAGTTAAG 1743
> Ahg927569 jgi|Araly1|927569|scaffold_300026.1
Length=1793
Score = 1129 bits (611), Expect = 0.0
Identities = 1159/1422 (82%), Gaps = 43/1422 (3%)
Strand=Plus/Plus
Query 200 CTTTGCCTAG-TATGCCTTCCGATGGTGGAAATTTTGGCAAAAGAAGCATTGATATGGGA 258
|||| ||| | ||| ||||| | ||||||||||||||| ||| |||| || ||| |||||
Sbjct 206 CTTTACCT-GTTATCCCTTCGGGTGGTGGAAATTTTGGGAAAGGAAGGATAGATCTGGGA 264
Query 259 GGTCTTGAGGTTACT-CAAATCTCTATCTCAAACTCAACATCACACAGAGTGTGGAGAAC 317
||||||||||| | | ||| |||| ||||||| |||||||||||| ||||| ||||| ||
Sbjct 265 GGTCTTGAGGTGA-TCCAAGTCTCCATCTCAACCTCAACATCACAGAGAGTATGGAGGAC 323
Query 318 TTATGAAGGAGGGCCGGATAACATGGGAGTCAGC-ATCTTTGAACC-AACTACTATTCCT 375
|| || |||||||| | | ||||||| ||| | ||||| |||| | | | | |||||
Sbjct 324 ATACGAGGGAGGGCCCAACAGCATGGGACTCA-CTATCTTCCAACCTATC-AATCTTCCT 381
Query 376 CGTA-ATTTCTTCAAACTTGGCTTCTATGCACAACCTAACAACCGACAGCTTTTTGGTTG 434
| | ||| |||| |||||||||||||| ||||| |||||||| | |||||| || ||
Sbjct 382 CCCAGCTTT-TTCACTCTTGGCTTCTATGCGCAACCCAACAACCGTCTGCTTTTCGGCTG 440
Query 435 GATTCTTGTTGCAAAAGACGTATCGGGAAGTAATTTAAGACCACCAGTCGACTACACTGA 494
| |||||| ||||| |||||| || |||| || || || ||||| || | |||| |||
Sbjct 441 GGTTCTTGCTGCAAGAGACGTCTCTGGAAATAGCTTGAGGCCACCCGTTGGCTACGTTGA 500
Query 495 AGTTGGAAACACTACAACATTGCTTATCAAACAAGA-GGGGCCTGCATATTTTTGGCAGC 553
||| |||||||||| || || |||||| ||||| |||| |||| |||||||||||||
Sbjct 501 AGTCATAAACACTACATCAATGAATATCAACCAAGACGGGG-CTGCTTATTTTTGGCAGC 559
Query 554 CCCTATGTCCTAATGGATATCATGCGGTTGGTCTATATGTCACTACTTCTCCTATGAAGC 613
|||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 560 CCCTATGTCCCGATGGGTATCAAGCGGTTGGTCTATATGTCACTACTTCTCCTCTGAAGC 619
Query 614 CCTCTTTGGGACAA-AATTCTATAAGCTGTGTTCGATCTGATCTCACAGAACAGAGTGAA 672
|||| || | ||| ||| | |||||||| |||||||| ||||| || ||||||||||||
Sbjct 620 CCTCGTTAAGTCAAGAATCC-ATAAGCTGCGTTCGATCCGATCTTACGGAACAGAGTGAA 678
Query 673 GCCGATACATGGGTATGGAGGATAAAAGATATGACTATTTCTAGTTTGAGACCGGCCA-C 731
| ||||||||||| ||| ||| ||| || |||||| ||||||||||||||||||||| |
Sbjct 679 ACGGATACATGGGTTTGGGGGACAAACGAAATGACTCTTTCTAGTTTGAGACCGGCCAAC 738
Query 732 GAGAGGAGTAGAGGCGACAGGTGTGTTCACAGGGACATTCAGCTGCAAACAACTAAACTT 791
|||||| ||| || ||||||||| ||||||||||||||||||| | | ||||| | |
Sbjct 739 -AGAGGAACAGAAGCAACAGGTGTGCACACAGGGACATTCAGCTGCCAGCCACTAAGCGT 797
Query 792 TCTTCCTCATCCCCCTCCTTTATTCTGCTTAAAAAATACAAAATTTGACTTGTCAAGCAT 851
| ||| | ||| |||||| | |||||||| ||||| ||||||||||||||||| |||||
Sbjct 798 CCCTCCCCCTCCTCCTCCTCTGTTCTGCTTGAAAAACACAAAATTTGACTTGTCTAGCAT 857
Query 852 GCCAAGCGAAAATCAAACTAGAGTTTTGTTTAAAACGTATTCTCCTTGGATATATTTACA 911
||||||| | || |||||||| ||||||||| || |||||||||||||||||||||| ||
Sbjct 858 GCCAAGCCATAACCAAACTAGCGTTTTGTTTCAATCGTATTCTCCTTGGATATATTTGCA 917
Query 912 CCCAAAAGAAGATTTCCTTCCTTCCTCTGTCAATTGGGTTTTCGCTAACGGTGCCTTGCT 971
||| | |||||||| ||||||||||||||||||||| |||| |||| |||||| || |
Sbjct 918 TCCAGATGAAGATTTTCTTCCTTCCTCTGTCAATTGGTTTTTTTCTAATGGTGCCCTGTT 977
Query 972 ACACAAGAAAGGAAACGAATCCATCCCGGTCCC-GATACATCCAAATGGTTCAAACCTTC 1030
| | ||| ||| |||||||||| ||| ||||| | | || || | |||||||||||||
Sbjct 978 ATTCCAGAGAGGCAACGAATCCAACCCCGTCCCTG-TGCAGCCGGACGGTTCAAACCTTC 1036
Query 1031 CACAAGGAGGTT-GCAATGATGACTTGTTTTGGTTAGATTATCTAGTCGATAAAAAGGCT 1089
| ||||| |||| | | ||||| || || |||||||| |||| || ||||| || ||
Sbjct 1037 CGCAAGGCGGTTCGGA-TGATGGTTTATTCTGGTTAGACTATCCGGTGGATAAGAACGCA 1095
Query 1090 AGAGAAAAGG-TTAAGAGGGGAGATTTAG-AGAGCACTAAGGTGTATCTACACATCAAAC 1147
| || || || ||||||||||||| |||| | | ||| || |||||||||||||||||||
Sbjct 1096 A-AGGAATGGGTTAAGAGGGGAGACTTAGGAAA-CACGAAAGTGTATCTACACATCAAAC 1153
Query 1148 CAATGTTTGGAG-CTACTTTCACAGATATTGTAGTATGGCTATTCTTTCCCTAT-AACGG 1205
|||||||||||| | |||||||| || || || || ||| |||||| |||| | |||||
Sbjct 1154 CAATGTTTGGAGGC-ACTTTCACTGACATCGTCGTGTGGATATTCTA-CCCTTTCAACGG 1211
Query 1206 AAATGCACATTTAAAATTTTTGTTTATCAAGAGCCTGTCGCTAGGAAATATTGGCGAGCA 1265
|| || | | || ||||| || |||||||||||||| || || |||||||||| ||
Sbjct 1212 CAACGCCCGCCTCAAGTTTTTATTCATCAAGAGCCTGTCACTGGGGGATATTGGCGAACA 1271
Query 1266 TGTTGGAGACTGGGAACACGTTACATTACGCATCAGCAACTTCAATGGTGAGTTATGGCG 1325
| |||||||||||||||| ||||| | ||||||||||||||||| || |||||||||||
Sbjct 1272 TATTGGAGACTGGGAACATGTTACGCTGCGCATCAGCAACTTCAACGGAGAGTTATGGCG 1331
Query 1326 TGTTTACTTTTCTGAACACAGTGGAGGAACTTTAGTGGATGCATGCGATCTAGAGTTCAT 1385
| ||||| ||||| |||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 1332 CGCATACTTCTCTGAGCACAGTGGGGGAACTTTAGTGGAGGCATGCGATCTAGAGTT--T 1389
Query 1386 GCAAGGTGGAAACAAACCAGT-AGTATATTCGTCTCTTCATGGGCATGCAATGTTCTCCA 1444
||||||||||||||||| || || || ||||||||||| || || ||||||||||| |
Sbjct 1390 -CAAGGTGGAAACAAACCTGTGAGC-TACTCGTCTCTTCACGGACACGCAATGTTCTC-A 1446
Query 1445 A-ACCTGGAGTCGTGTTGCAAGGTG--G-CGGCAAAAGTGGAATAAGGAACGACATGGCA 1500
| ||| ||| | ||||||||||| | | ||| ||| | | | |||||||||| ||||||
Sbjct 1447 AGACCAGGACTTGTGTTGCAAGGCGATGACGG-AAACG-GCA-TAAGGAACGATATGGCA 1503
Query 1501 AGAAGCGACAAATGCTTTGACGCAGGTATTGGATATGAAG-TGATTGCGGGACCTGGCGT 1559
||||| ||||||| ||||||||||||| ||| ||||| | || |||| ||||| ||| |
Sbjct 1504 AGAAGTGACAAATTCTTTGACGCAGGTGTTGCTTATGA-GCTGGTTGCAGGACCGGGCAT 1562
Query 1560 GGTTGAGCCACCGTGGCTGAATTATTTTAGGAAATGGGGACC 1601
| |||||||||||||| || ||||||||||||||||||||
Sbjct 1563 TGAGGAGCCACCGTGGCTCAACTATTTTAGGAAATGGGGACC 1604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66772199485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5