BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01890.1
Length=1898
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927567 jgi|Araly1|927567|scaffold_300024.1 1735 0.0
> Ahg927567 jgi|Araly1|927567|scaffold_300024.1
Length=1327
Score = 1735 bits (939), Expect = 0.0
Identities = 1131/1221 (93%), Gaps = 23/1221 (2%)
Strand=Plus/Plus
Query 482 AAGGTTCCCA-CA--TAAACCTCCCATTGGAGGACCTCCTGCTGTTCCTCCTAGTATGGA 538
|||||||||| || |||||| ||||||||||||||| | | |||| |||| | ||
Sbjct 110 AAGGTTCCCACCACCTAAACCGCCCATTGGAGGACCT-C--C---TCCTAGTAGTCTAGA 163
Query 539 GTTGACTCCAGCTTCCAGGAAAAAGAAACATAAGCTTCCAGACAAGTCCTCCTTGCAGGA 598
|||||||||||||||| |||||||||||| | || ||||| |||||||||||
Sbjct 164 GTTGACTCCAGCTTCCCGGAAAAAGAAAC---A-----CA-ACAAG---TCCTTGCAGGA 211
Query 599 GCGCGTTGCTGCCGTCTTGCCCGAGTCTGCTCTCTACACACAGCTTCTTGAGTTTGAGTC 658
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 212 GCGCGTTGCAGCCGTCTTGCCCGAGTCTGCTCTCTACACACAGCTTCTTGAGTTCGAGTC 271
Query 659 TCGGGTTGATGCCGCTCTCTTCAGAAAGAAAGTTGACATCCAAGACTCCCTTAAGAACCC 718
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 272 TCGGGTTGATGCAGCTCTCTTTAGAAAGAAAGTTGACATCCAAGACTCCCTTAAAAACCC 331
Query 719 TCCTTCCATTCAGAAGACCCTTAGGATCTACGTTTTCAACACCTTTTCCAACCAGATCCC 778
||| ||||| || |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 332 TCCCTCCATACACAAGACCCTTAGGATCTACGTTTTCAACACCTTCTCTGACCAGATCCC 391
Query 779 TGGTCCTGACCCTCCCACATGGACTCTTAGGATTTTCGGCAGGGTCCTGGATCCTGACCA 838
||| ||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 392 TGGGAATGACCCTCCCACATGGACTCTTAAGATTTTCGGCAGGATCATGGATCCTGACCA 451
Query 839 CACTGGTGGATTAGTTCAGAATTCAAACCCACTTTATCCCAAGTTCTCGTCTTTCTTCAA 898
| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct 452 CGCTGGTGGATTAGTTCAGAGTTCAAACCCTCTTTATCCCAAGTTCTCGTCTTTCTTAAA 511
Query 899 AACGTTAAAGATATCCCTGGACCAGAGCCTGTATCCTGAGAACCATCTGATCGAAT-GGA 957
|||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| |||
Sbjct 512 AACGCTAAAGATATCCCTGGACGAGAGCCTGTATCCTGAGAGCCATCTGATCGAATGGGA 571
Query 958 AAAGGGATCGATCGCCTGCTCCTCTGGAAGGGTTTGAGATAAAGAGGATAGGGTGTCAGG 1017
|| | ||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 572 GAA-TGCTCGATCGCCTGCTCCTCAGGAAGGGTTTGAGATCAAGAGGATAGGGTGTCAGG 630
Query 1018 AGTTTGCAGCTACTATACTGTTGGAGATGAATTACGTCCCTGAGAAGTTCAAGACTTCTC 1077
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 631 AGTTTGCAGCTAAGATACTGTTGGAGATGAATTACGTCCCTGAAAAGTTCAAGACTTCTC 690
Query 1078 CTGCTTTGATGCAAGTTTTGGGCATTGAGGTTGACACTCGCCCAAGAATCATTGCGGCAA 1137
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 691 CTGCTTTGATGCAAGTTTTGGGCATTGAGCTTGACACTCGCCCAAGGATCATTGCGGCAA 750
Query 1138 TCTGGCATTACGTGAAAGTCAGGAAACTGCAAAACCCAAACGACCCTTCTTTCTTCAACT 1197
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||
Sbjct 751 TCTGGCATTACGTGAAAGCCAGGAAACTGCAAAACCCTAACGACCCTTCTTTCTTTAACT 810
Query 1198 GTGATGCTGCTCTCCACAGTGTTTTTGGGGAAGAGAAGATGAAATTCACTATGCTCTCTC 1257
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 811 GTGATGCTGCTCTCCACAGACTTTTTGGGGAAGATAAGATGAAATTCACTATGCTCTCTC 870
Query 1258 ATAAGATATCTCAGCACCTATCACCTCCGCCTCCCATTCAGCTTGTACACAAGATCAAGC 1317
| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 871 AGAAGATATCTCAGCACCTATCACCTCCGCCTCCCATTCCTCTTGTACACGAGATCAAGC 930
Query 1318 TTTCGGGGAACAATCCAGCCATCTCAGCATGTTACGATGTGCTTGTGGACATACCAGCAC 1377
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 931 TTTCGGGGAACAATCCAGCCATCTCAGCATGTTACGATGTGCTAGTGGACATACCATTAC 990
Query 1378 CGGTCCAAACGGAGCTTTCCAATCTGCTCGCTAATCCAGAGAAGAACAAAGAGATTGAGG 1437
||||||||| |||||||| ||||||||| |||||| ||||||||||||||||||| ||||
Sbjct 991 CGGTCCAAAGGGAGCTTTGCAATCTGCTGGCTAATGCAGAGAAGAACAAAGAGATCGAGG 1050
Query 1438 CATGTGATGAAGCCATATGCGGAGCCATAAGGAAAATCCACGAGCACAGAAGGAGACGGG 1497
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1051 CATGTGATGAAGCCATATGCGGAGCCTTAAGGAAAATCCACGAGCACAGAAGGAGACGAG 1110
Query 1498 CGTTTTTCTTAGGGTTTAGCCAGTCACCGGTGGAATTCACCAATGCCTTGATGGAATCTC 1557
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1111 CGTTTTTCTTGGGGTTTAGCCAGTCACCGGTGGAATTCACCAATGCCTTGATCGAATCTC 1170
Query 1558 AGACCAAAGATCTGAAGCTTGTTGCAGGAGAAGCAAGTCGAAACGCTGAGAAAGAAGGCC 1617
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1171 AGACCAAAGATCTGAAGCTTGTAGCAGGAGAAGCAAGACGAAACGCTGAGAAAGAAGGCC 1230
Query 1618 GATCAGAGTTCTTCAATCAGCCATGGGTGGAGGATGCTGCAATACGTTACTTGAACCGGA 1677
|||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1231 GATCAGAGTTCTTCAACCAGCCATGGGTGGAAGATGCTGCCATACGTTACTTGAACCGGA 1290
Query 1678 AGCCAGCAGGCGGGTAAGATG 1698
|||||||||||||||||||||
Sbjct 1291 AGCCAGCAGGCGGGTAAGATG 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71304938640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5