BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01900.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927566 jgi|Araly1|927566|scaffold_300023.1 2333 0.0
Ahg496532 jgi|Araly1|496532|fgenesh2_kg.8__2348__AT5G63450.1 84.2 2e-15
> Ahg927566 jgi|Araly1|927566|scaffold_300023.1
Length=1538
Score = 2333 bits (1263), Expect = 0.0
Identities = 1424/1501 (95%), Gaps = 14/1501 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGCTTCAACTTTTATTCTTCTTCTTGTCCTTGTGCTGTTGCTTGTCTCTGCGGGA 60
||||||||||||||| | |||||||||||| ||||||||||| |||||||||||||||||
Sbjct 21 ATGGAAGCTTCAACTCTCATTCTTCTTCTTATCCTTGTGCTGCTGCTTGTCTCTGCGGGA 80
Query 61 AAACA---TGTGATATATTCTTGCCGCAACTCTACACCGAAAACATACCCGGTTATCGGA 117
||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 81 AAACATGTTGTGATATATCCTTGCCGCAACTCTATACCGAAAACATACCCGGTTATCGGA 140
Query 118 TGCTTAATTTCATTCTATACCAACCGAAACCGGTTACTGGATTGGTATACAGAGCTCCTA 177
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 141 TGCTTAATTTCATTCTATACCAACCGCAACCGGTTACTGGATTGGTATACAGAGCTCCTA 200
Query 178 ACCGAATCCCCGAGTCGGACGGTAGTCATTCGCCGCTTAGCTGCACGGAGAACCGTAGTG 237
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 201 ACCGAATCCACGAGTCGGACGGTAGTCATTCGCCGCTTAGCTGCCCGGAGAACCGTAGTG 260
Query 238 ACGGCGAACCCCTCGAACGTGGAGTATATCCTCAAAACAAACTTCGACAACTATCCCAAA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 ACGGCGAACCCCTCGAACGTGGAGTATATCCTCAAAACAAACTTCGACAACTATCCCAAA 320
Query 298 GGCAAACCTTTTACGGAGATCCTCGGAGATTTTCTCGGCAACGGGATCTTCAACGTTGAC 357
|||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 321 GGCAAACCCTTTACGGAGATCCTCGGAGACTTTCTCGGCAACGGAATCTTTAACGTTGAC 380
Query 358 GGAAACCTCTGGTTAAAGCAGAGGAGACTTGCTACACACGACTTCACCCCAAAGTCGCTG 417
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 381 GGAAACCTCTGGTTAAAGCAGAGGAGACTTGCTACTCACGATTTCACCCCAAAGTCGCTG 440
Query 418 AGAGAATACGTCACCGTTTTGAGAAACGAGGTGGAGAAGGAGCTCTTAGCGTTTCTAAAC 477
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 441 AGAGAATACGTCACCGTTTTGAGAAACGAGGTGGAGAAGGAGCTCGTAGCGTTTCTAAAC 500
Query 478 GCAGCTGCGGAAGATTCACAACCCTTCGATCTTCAGGAGCTTCTCCGTAGATTCACTTTC 537
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 501 GCAGCTGCGGAAGATTCACAACCCTTCGATCTTCAGGAACTTCTCCGTAGATTCACTTTC 560
Query 538 AATATTGTTTGCATTGTTTTCCTCGGGATCGATCGTTGCACTTTAAACCCTTCCTCCCCC 597
|||||||| ||||||||||||||||||||||| |||||| |||||||||| || || ||
Sbjct 561 AATATTGTATGCATTGTTTTCCTCGGGATCGACCGTTGCTCTTTAAACCCGTCGTCGCCT 620
Query 598 GTTTCTGAGTTCGACAGAGCCTTTCAGACAGCTTCTGCGGTCAGCGCTGGACGCGGTTCC 657
||||||||||||||| |||| || || |||||||||||||| ||||||||||||||||||
Sbjct 621 GTTTCTGAGTTCGACCGAGCGTTCCACACAGCTTCTGCGGTTAGCGCTGGACGCGGTTCC 680
Query 658 GCACCGCTGTCTTTTGTGTGGAAGTTTAAGAGACTGGTCGGTTTTGGATCTGAGAAAGAG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 681 GCACCGCTGTCTTTTGTGTGGAAGTTTAAGAGACTGGTCGGTTTTGGATCTGAAAAAGAG 740
Query 718 CTCAGAAAAGCCGTCGGAGAAGTCCATAACTGCGTCGATGAGATCATTCGGGATAAGAAG 777
|||||||| || ||||| |||| |||| |||||||||||||||||||||||| ||||||
Sbjct 741 CTCAGAAACGCTATCGGACAAGTTCATAGCTGCGTCGATGAGATCATTCGGGAGAAGAAG 800
Query 778 AGGAAGCCTGCCAACCAAGACTTTCTCTCGCGGTTGATCGTCGCCGGAGAAAGCGACGAG 837
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 801 AGGAGGCCTGCCAACCAAGACTTTCTGTCGCGGTTGATCGTCGCCGGAGAAAGCGACGAG 860
Query 838 ACGGTGAGAGATATGGTAATAAGTATCATAATGGCGGGGAGGGACACCACGTCGGCGGTA 897
|| ||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 861 ACAGTGAGGGATATGGTAATAAGTATCATAATGGCCGGGAGGGATACCACATCGGCGGTA 920
Query 898 GCCACACGGCTGTTTTGGTTGATCACCGGTCACGAGGAAACCGAGCACGATCTGGTTAGT 957
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 921 GCCACACGGCTGTTTTGGTTGATCACCGGTCACAAGGAAACCGAGCACGATCTGGTTAGT 980
Query 958 GAAATCCGATCGGTCAAGGAGGAGATAACGGGGGGTTTTGATTACGAATCATTGAAGAAA 1017
|||||||||||||| | |||||| ||| |||||||||||||||||||||||||| |||
Sbjct 981 GAAATCCGATCGGT-TA--AGGAGACAACCGGGGGTTTTGATTACGAATCATTGAAAAAA 1037
Query 1018 CTGAGTTTGTTGAAAGCGTGTTTGTGTGAAGTGATGCGATTGTATCCTCCGGTGCCGTGG 1077
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 CTGAGTTTGTTGAGAGCGTGTTTGTGTGAAGTGATGCGATTGTATCCTCCGGTGCCGTGG 1097
Query 1078 GACTCCAAACACGCCTTAACCGATGACCGGTTACCAGACGGTACGTTGGTGCGTGCCGGA 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1098 GACTCCAAACACGCCTTAACCGATGACCGGTTACCAGACGGTACGTTGGTGCGTGCAGGA 1157
Query 1138 GACCGGGTAACGTATTTTCCATATGGTATGGGGAGAATGGAAGAGCTAT-GGGGGGAAGA 1196
||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||
Sbjct 1158 GACCGGGTAACGTATTTTCCATATGGTATGGGGAGAATGGAGGAGC-ATTGGGGGGAAGA 1216
Query 1197 TTGGGATGAGTTTAAACCAAACCGGTGGGCTGA-G--TC-T--TATGATAAAACCTGCTG 1250
||||||||||||||||||||||||||||| ||| | || | |||||||||||||||||
Sbjct 1217 TTGGGATGAGTTTAAACCAAACCGGTGGGTTGATGAGTCGTCCTATGATAAAACCTGCTG 1276
Query 1251 CAGAGTTTTGAAAAAGGTGAATCCGTTCAAGTTTCCGGTTTTCCAAGCCGGCCCAAGGGT 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 CAGAGTTTTGAAAAAGGTGAATCCGTTCAAGTTTCCGGTTTTCCAAGCCGGCCCAAGGGT 1336
Query 1311 TTGTCTTGGGGAAGAGATGGCGTACGTGCAGATGAAGTATATTGTGGCTTCCATACTTGA 1370
|||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1337 TTGTCTCGGAGAAGAGATGGCGTACGTGCAGATGAAGTACGTTGTGGCTTCCATACTTGA 1396
Query 1371 CCGGTTTGAGATTGAACCGATCCCTACGGATAAACCGGATTTTGTGCCAATGCTCACGGC 1430
|||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 1397 CCGGTTTGAGATCGAACCGATCCCTACGGATAAACCGGATTTTGTGGCGATGCTCACAGC 1456
Query 1431 TCACATGGCTGGTGGGATGCAAGTCCGCGTTCATCGGAGAGATCCTTCTCTTTCCCCTTG 1490
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1457 TCACATGGCTGGTGGGATGCAAGTCCGCGTTCGTCGGAGAGATCCTTCTCTTTCTCCTTG 1516
Query 1491 A 1491
|
Sbjct 1517 A 1517
> Ahg496532 jgi|Araly1|496532|fgenesh2_kg.8__2348__AT5G63450.1
Length=1677
Score = 84.2 bits (45), Expect = 2e-15
Identities = 138/181 (76%), Gaps = 13/181 (7%)
Strand=Plus/Plus
Query 1159 TATGGTATGGGGAGAATGGAAG-A-GCTATGGGGGGAAGATTGGGATGAGTTTAAACCAA 1216
||||||||||| || |||| || | | | ||||| |||| ||||| ||||||||||| |
Sbjct 1249 TATGGTATGGGAAGGATGG-AGAATG-TGTGGGGTAAAGACTGGGAAGAGTTTAAACCGA 1306
Query 1217 ACCGGTGGGCTGA-GTCTTA-TGATAAAAC-CTGCTGCA-GAGTTTTGAAAAAG-GTGAA 1271
|||||||| ||| | | || ||| | | | | |||||| ||||| || |
Sbjct 1307 ACCGGTGGTTTGAGGAAGAACCGA-GTAACGGTACAAAACGGGTTTTG-AAAAGTGTCAG 1364
Query 1272 TCCGTTCAAGTTTCCGGTTTTCCAAGCCGGCCCAAGGGTTTGTCTTGGGGAA-GAGATGG 1330
| |||||||||||||||||||||||||||| ||||||||||| | | ||||| || ||||
Sbjct 1365 TTCGTTCAAGTTTCCGGTTTTCCAAGCCGGACCAAGGGTTTG-CATAGGGAAAGAAATGG 1423
Query 1331 C 1331
|
Sbjct 1424 C 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5