BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01920.1
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477320 jgi|Araly1|477320|fgenesh2_kg.3__21__AT3G01920.1 1495 0.0
> Ahg477320 jgi|Araly1|477320|fgenesh2_kg.3__21__AT3G01920.1
Length=1043
Score = 1495 bits (809), Expect = 0.0
Identities = 979/1058 (93%), Gaps = 23/1058 (2%)
Strand=Plus/Plus
Query 12 TGAGAGATGGCGGTGGCCAAACTTCA---CGGCGGAGGTATGGCGGCGATG-CGTCTTCT 67
|||||||||||||||||||||||||| |||||| ||||| || ||||| || | |
Sbjct 1 TGAGAGATGGCGGTGGCCAAACTTCACGGCGGCGGTGGTAT-GC--CGATGCCG-ATGCG 56
Query 68 TCTACTTCCTTCCCCGATGACGCACCGGCGACCATCAACGCTTCCGAGCACTGCCTCTTT 127
|| |||||||||||||||||||||| | | ||||||||||||| |||||||||
Sbjct 57 CCTTCTTCCTTCCCCGATGACGCACC-G-G-------ACGCTTCCGAGCATTGCCTCTTT 107
Query 128 ATCTCCACGGAGATACATCGTC---GCGTTGGCGGCCAAGAGAAGCCCTAAGCGTCTCAA 184
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 108 CGCTCCACGGAGACACATCGTCGTTGCGTTGGCGGCCAAGAGAAGCCCTAAGCGTCTCAA 167
Query 185 ATACTCTACTCCTCGTTTCACCAAGGAGGGGGAATTGGTGTACATCGAGGTCGATCCTTG 244
|||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 168 ATACTCCACTCCTCGTTTCTCCAAGGAGGGGGAATTGGTGTACATAGAGGTCGATCCTTG 227
Query 245 TGGTGTTGATTCCTGGAAACTCCAACCTGTCATTGACCTTCTCAAACAAGGAGCTGTTGG 304
||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 228 TGGTGCTGATTCCTGGAAACTCCAACCTGTCATTGAGCTTCTCAAGCAAGGAGCTGTTGG 287
Query 305 TGTTATTCCCACTGATACCGTATATGCCATTGCTTGTGATTGTAAAAACCATTCCGCTGT 364
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||
Sbjct 288 TGTTATTCCCACTGATACTGTATATGCCATTGTTTGTGATTGTAAAAACCATTCGGCTGT 347
Query 365 TGAGCGTCTCCGAAGGATTAAAAAGATTGAATCCTCCAAGCCACTTAGCATCTTATGCCG 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 TGAGCGTCTCCGAAGGATTAAAAAGATTGAATCCTCCAAGCCACTTAGCATCTTATGCCG 407
Query 425 TTCCTTACGAGATATTGACACTTTTACAATGGGCTTTCCTCGTGGTGATGGTCATGGTCA 484
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 408 TTCCTTACGAGATATTGACACCTTTACTATGGGCTTTCCTCGTGGTGATGGTCATGGTCA 467
Query 485 TGCTAACGTTTTTCGAGCTGTCAAGCAATGCTTACCTGGTCCTTATACCTTCATCTTGAC 544
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 468 TGCTAACGTTTTTCGAGCTGTCAAGCAATGCTTACCTGGTCCTTACACCTTCATCTTGAC 527
Query 545 TGCAAGCAAGGAACTACCCAAACAGTGTGTAGGTTATGGCACCACAAGTGTGAAATATGC 604
||| ||||| ||| |||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 528 TGCTAGCAAAGAATTACCCAAACAATGTGTAGGCTATGGCACCACAAGTGTCAAATATGC 587
Query 605 ATCTAGGAAAAACGTGGGTGTCCGCATATCTGATGATGCTCTCTGCCAAGCTATTCTGCA 664
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 588 ATCTAGGAAAAATGTGGGTGTCCGCATATCTGATGACCCTCTCTGCCAAGCTATTCTGCA 647
Query 665 -GCAGATGGATGCCCCATTGATTTGCACAAGTGTGAAAGGGCCTAAAGAAAATGAATGGA 723
| |||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||
Sbjct 648 CG-AGATGGATGCCCCACTGATTTCCACAAGTGTGAAAGGGCCAAAAGAAAATGAATGGA 706
Query 724 TGATCGACCCAACCGCAATAGGTGACATATATGGACCAGAGGGTCTGGATTTTGTGGTAG 783
|||| ||||||||||| || |||||||| |||||||||||||||||||||||| ||||||
Sbjct 707 TGATTGACCCAACCGCCATCGGTGACATCTATGGACCAGAGGGTCTGGATTTTCTGGTAG 766
Query 784 ACGGAGGTATACGAGTGGCTGAACCATCCACCATCGTGGATATGACAGGACCATATCCCA 843
| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 767 ATGGAGGTGTACGAGTGGCTGAACCATCAACCATCGTGGATATGACAGGACCATATCCCA 826
Query 844 AGGTCATAAGGGAAGGGAAGGGACCTATATTGCCGTGGATGGTGGTTGAGGACGACGAGT 903
|||||||| || |||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 827 AGGTCATACGGCAAGGGAAGGGACCTATATTGCCTTGGATGGTGGTTGATGACGAGGAGT 886
Query 904 CTTCCCTGCGCCAAGATCTTATGGCGTCTGGCACTTAAAACAGAGACAGACACAGATTAG 963
|| |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 887 CTCCCCTGCGCCAAGATCTTATGGCTTCTGGTACTTAAAACAGAGACAGGCACAGATTAG 946
Query 964 GTCTTTGTTTGACATCTACACACAAAGACACCTTGTAGCTGGAGAATATGAATAATGTGA 1023
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 947 GTCTTTGTTTGACATCTACACA-AAAGACACCTTGTAGCTGGAGAATATGAATAATGTGA 1005
Query 1024 ATACAATTATTACAAATGCGAATTCAAAATCCATACAC 1061
||| ||||||||||||| ||| ||||||||||||||
Sbjct 1006 ATATTATTATTACAAATGTAAATCCAAAATCCATACAC 1043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39495342012
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5