BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G01940.1

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477318 jgi|Araly1|477318|fgenesh2_kg.3__19__AT3G01940.1           361    1e-99


> Ahg477318 jgi|Araly1|477318|fgenesh2_kg.3__19__AT3G01940.1
Length=213

 Score =  361 bits (195),  Expect = 1e-99
 Identities = 207/213 (97%), Gaps = 0/213 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAGGAGCGGACTGGGGGCCGGTGGCGGTTGCGGTGGTGCTGTTCGTAGTGTTATCG  60
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAAGGAGCGGACTGGGGGCCGGTGGCGGTTGCGGTGGTGCTGTTCGTAGTGTTATCG  60

Query  61   CCGGGGCTTCTGTTTCAGTTGCCGGCGAGGAGGAGAGTGTTGGAGTGCGGCAACATGACC  120
            ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   CCGGGGCTTCTCTTTCAGTTGCCAGCGAGGAGGAGAGTGTTGGAGTGCGGCAACATGACC  120

Query  121  ACAAGCGGGATCTCAATATTGGTTCATGCCATTCTCTTCTTTGCTATTATCACGATTTTG  180
            |||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct  121  ACAAGCGGCATCTCAATATTGGTTCACGCCATTCTCTTCTTTGTTATTATCACGATTTTG  180

Query  181  GTCATCGCCATTCAAATTCACATTCACATCTAA  213
            |||||||||||||||||||||||||||||||||
Sbjct  181  GTCATCGCCATTCAAATTCACATTCACATCTAA  213



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7637652200


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5