BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01950.1
Length=389
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477317 jgi|Araly1|477317|fgenesh2_kg.3__18__AT3G01950.1 468 1e-131
> Ahg477317 jgi|Araly1|477317|fgenesh2_kg.3__18__AT3G01950.1
Length=315
Score = 468 bits (253), Expect = 1e-131
Identities = 286/301 (95%), Gaps = 6/301 (2%)
Strand=Plus/Plus
Query 4 TATAGAGAGACGTATATTATAGCTAGAGAAGAAAC--AGAAAACAAAGATGGGGTTGGAC 61
||||||||||| |||| ||| | |||||||||||| |||||||||||||||||||||||
Sbjct 1 TATAGAGAGACATATA-TAT-G-TAGAGAAGAAACAGAGAAAACAAAGATGGGGTTGGAC 57
Query 62 TGGGGACCGGTGCTAATGTCGGTAATTTTCTTCATCGTGTTGAGCCCTGGAGTTTTGTTT 121
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 58 TGGGGACCGGTGCTAATGTCGGTAATTTTCTTCATCCTGTTGAGCCCTGGAGTTCTGTTT 117
Query 122 CAGCTGCCCGGAAAGAGCAAAGCGGTTGAGTTCGGTGGGTTTCAGACAAGCGGCCCCTCC 181
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 118 CAGCTGCCCGGAAAGAGCAAAGCCGTTGAGTTCGGTGGGTTTCAGACAAGCGGCCCCTCC 177
Query 182 ATTGTCATCCACACTCTCCTCTTCTTCGCCTTCATCACCATCTCCCTCATCGCCCTTCAC 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ATTGTCATCCACACTCTCCTCTTCTTCGCCTTCATCACCATCTCCCTCATCGCCCTTCAC 237
Query 242 ATCCACATCTACGCCGCCTAATT-AACCCTACCTTCCCCTTCACGTCATGGCTCCTTTTC 300
|||||||||||||||||||| || ||||||||||||||| ||||||||||| |||| ||
Sbjct 238 ATCCACATCTACGCCGCCTAGTTTAACCCTACCTTCCCCCACACGTCATGGCCCCTTCTC 297
Query 301 T 301
|
Sbjct 298 T 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13926789985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5