BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G01960.1

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316997 jgi|Araly1|316997|fgenesh1_pm.C_scaffold_3000013           676    0.0  


> Ahg316997 jgi|Araly1|316997|fgenesh1_pm.C_scaffold_3000013
Length=417

 Score =  676 bits (366),  Expect = 0.0
 Identities = 401/418 (96%), Gaps = 2/418 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGATGAACAGAAGGAGATCAAGAGGGTTCATGATAGCTAAGCTAATGCCCTTTTGC  60
            ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct  1    ATGGAGATGAACAGAAGGAGATCAAGAGGGTTCATGATAGCTAGGCTAATACCCTTTTGC  60

Query  61   AAAGCTGTGAAATCTCCAACTCCTTCCCAAGACCTTTATAATAATGTTCATTACACTTCT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AAAGCTGTGAAATCTCCAACTCCTTCCCAAGACCTTTATAATAATGTTCATTACACTTCT  120

Query  121  TCCACTACGACTTCCTACGCTCGTCAACCTGATTTCAACAACTACGTAACTGCCACTACG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  121  TCCACTACGACTTCCTACGCTCGTCAACCTGATTTCAACAACTACGTAACTGCCACTTCG  180

Query  181  CCTCTCCCTCCTAAAGTTAGCTTCCTCCTTCAACCATCCTTGGCTCCTGAGGGTAAGGAT  240
            ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  181  CCTATCCCTCCTAAAGTTAGCTTCCTCCTTCAACCATCCGTGGCTCCTGAGGGTAAGGAT  240

Query  241  ATGGAAAAGAAGCTGAACATGATGGCAGAGAAGCTGATCGGCAGAGGTATTAACGGAGTG  300
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct  241  ATGGAAAAGAAGCTGAACATGATGGCAGAGAAGCTGATCGGCAGAGGGATTAACGGTGTG  300

Query  301  GACGACTGCGTTGACGCTAGAGCCGCTTCTTATATCTCTTCGGTTCGAGAGAGGTTTAAG  360
             ||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct  301  AACGACTGCGTTGACGCTAGAGCCGCTTCTTACATCTCTTCGGTTAGAGAAAGGTTTAAG  360

Query  361  GCGGACCAATATTG-TGAGAAACTGACGACTGTTATTAGCTTAGATGATGAAAATTGA  417
            |||||||| | | | | ||||||||||||||||||||||||||||||||||| |||||
Sbjct  361  GCGGACCACTGT-GATCAGAAACTGACGACTGTTATTAGCTTAGATGATGAAGATTGA  417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14995146477


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5