BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G01970.1

Length=914
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927555 jgi|Araly1|927555|scaffold_300012.1                        501    4e-141


> Ahg927555 jgi|Araly1|927555|scaffold_300012.1
Length=530

 Score =  501 bits (271),  Expect = 4e-141
 Identities = 302/317 (95%), Gaps = 2/317 (1%)
 Strand=Plus/Plus

Query  373  aaggagtaagaagaagaagaaagagagagaagCGAGGTACGCGTTCCAGACAAGAAGCCA  432
            ||| || ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct  196  AAGAAG-AAGAAGAAGAAGAAAGAGAGAGAAGCGAGGTACGCCTTTCAGACAAGAAGCCA  254

Query  433  GGTTGATATACTGGATGATGGATACAGGTGGAGGAAGTACGGCCAAAAAGCAGTCAAGAA  492
            ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  255  GGTTGATATTCTGGATGATGGATACAGGTGGAGGAAGTACGGCCAAAAAGCTGTCAAGAA  314

Query  493  CAATCCATTCCCCAGGAGCTATTATAAGTGCACAGAAGAAGGATGCAGAGTGAAGAAGCA  552
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  315  CAATCCATTCCCCAGGAGCTATTATAAGTGCACAGAAGAAGGATGCAGAGTGAAGAAGCA  374

Query  553  AGTGCAGAGGCAATGGGGAGACGAAGGAGTGGTGGTGACGACATACCAAGGTGTTCATAC  612
            ||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct  375  AGTGCAGAGGCTATGGGGAGACGAAGGAGTGGTGGTGACCACATACCAAGGTGTGCATAC  434

Query  613  ACATGCCGTTGATAAACCCTCTGATAATTTCCACCACATCTTGACACAAATGCACATCTT  672
            |||| |||||||||||||||| ||||||||| ||||||||||||| ||||||||||| ||
Sbjct  435  ACATCCCGTTGATAAACCCTCAGATAATTTCAACCACATCTTGACCCAAATGCACATATT  494

Query  673  CCCTCCCTTTTGCTTGA  689
            ||||||||||| |||||
Sbjct  495  CCCTCCCTTTT-CTTGA  510


 Score =  176 bits (95),  Expect = 2e-43
 Identities = 103/107 (96%), Gaps = 0/107 (0%)
 Strand=Plus/Plus

Query  233  AAACGCAGAGGGAGTTAAGAAATGGAGGATAGGAGGTGTGATGTGTTGTTTCCATGTTCA  292
            ||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct  1    AAACGCATAGGGAGTTAAGAAATGGAGGATAGGAGGTGTCAGGTGTTGTTTCCATGTTCA  60

Query  293  TCATCGGTTGATCCTCGCTTGACAGAGTTTCATGGGGTCGACAACTC  339
            |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  61   TCATCGGTTGATCCTCGCTTGACAGAGTATCATGGGGTCGACAACTC  107



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33891273213


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5