BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01990.1
Length=1617
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477311 jgi|Araly1|477311|fgenesh2_kg.3__12__AT3G01990.1 2342 0.0
> Ahg477311 jgi|Araly1|477311|fgenesh2_kg.3__12__AT3G01990.1
Length=1577
Score = 2342 bits (1268), Expect = 0.0
Identities = 1440/1518 (95%), Gaps = 32/1518 (2%)
Strand=Plus/Plus
Query 1 ATCCTCCTTCAACTTCCCTCTCCCTCTCTCTTTTAGGA---ATTTTCCTCAGAAATTGGA 57
||||||||||| |||||||||||||||||||||| ||| |||||| || ||||||||
Sbjct 1 ATCCTCCTTCACCTTCCCTCTCCCTCTCTCTTTTGGGATTTTTTTTCCACAAAAATTGGA 60
Query 58 GGACTCACAC--T-CTTCTGGGT-TTCTGCTGCAGCCAAATCACCAAGGAGATACATACT 113
|||||||||| | | || | ||||||||||||||||||| ||||||||||||||||
Sbjct 61 GGACTCACACTTTCCAACTCTCTCTTCTGCTGCAGCCAAATCAACAAGGAGATACATACT 120
Query 114 ACAACCATGGATGATGATGAATATGCCAAGCTCATCAGGAGAATGAATCCTCCCAGAGTT 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACAACCATGGATGATGATGAATATGCCAAGCTCATCAGGAGAATGAATCCTCCCAGAGTT 180
Query 174 GTAATAGACAACAACGCAAGCGACGATGCCACTGTTATTCAGGTTGATAGTGTGAACAAA 233
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GTAATAGACAACAACGCAAGCGACGATGCCACTGTTATTCAGGTTGATAGTGTCAACAAA 240
Query 234 CATGGGACTCTATTGGAAGTAGTACAAGTGCTCACTGATATGAATCTTGTGATCAAGAAA 293
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 CATGGGACTCTGTTGGAAGTAGTGCAAGTGCTCACTGATATGAATCTTGTGATCAAGAAA 300
Query 294 GCTTACATCTCTTCCGATGGAGGTTGGTTCATGGACGTTTTCAAAGTCATCGACCAAGAT 353
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 GCTTACATCTCTTCCGATGGAGGTTGGTTCATGGACGTCTTCAAAGTCATCGACCAAGAT 360
Query 354 GGCAATAAGATCAGAGACACTCAAGTCCTTGACTATATCCAAAAGAGGATAGAGAGCAAC 413
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 361 GGCAATAAGATCAGAGACACACAAGTCCTTGACTATATCCAAAGGAGGATAGAGAGCAAC 420
Query 414 GCTGGGTGGTTCATTCCACCTTTGAGAAGCTCAGTTGGTGTAATGCCCACTGACGAATAC 473
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTGGCTGGTTCATTCCACCTTTGAGAAGCTCAGTTGGTGTAATGCCCACTGACGAATAC 480
Query 474 ACATCCATTGAGCTCGCTGGAACTGACAGACCCGGTCTCTTGTCTGAAGTATCTGCTGTT 533
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACAGCGATTGAGCTCGCTGGAACTGACAGACCCGGTCTCTTGTCTGAAGTATCTGCTGTT 540
Query 534 CTCACAGACCTTCACTGCAACGTTGTGAACGCTGAGATATGGACTCACAACACCAGAGCT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTCACAGACCTTCACTGCAACGTTGTGAACGCTGAGATATGGACTCACAACACCAGAGCT 600
Query 594 GCAGCGGTTATTCATGTCACGGACAATTCAACTCATTCTGCCATTACTGACCCGATTCGC 653
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 601 GCAGCGGTTATTCATGTCACGGACAATTCAACTAATTCAGCCATTACTGACCCGATTCGC 660
Query 654 CTTTCCACCATCAAGGAGCTGCTGTGCAATGTAGTGAGGACAAACAGCGGCTCAAGAGCT 713
||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 661 CTTTCCACCATTAAGGAGCTGCTTTGCAATGTAGTTAGGACAAACAGCGGTTCAAGAGCT 720
Query 714 GCGAAAACAGTCTTCTCTTGTTCTGATACACACAGGGAGAGACGGTTGCATCAGATCATG 773
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCGAAAACAGTTTTCTCTTGTTCTGATACACACAGGGAGAGACGGTTGCATCAGATCATG 780
Query 774 TTTGATGATAGGGACTACGAGGGAGTCAAAAGAG-CAAGGACATCGGCGTCAAGGCCCAG 832
||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct 781 TTTGATGATAGGGACTACGAGGGAGTCAAGAGAGCCAA-GACATCGGCGTCAAGGCCCAG 839
Query 833 TGTCACACTAATGAACATTGAGAAGGATTATACCGTTGTTACCATGAGGTCCAAAGATAG 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGTCACACTAATGAACATTGAGAAGGATTATACCGTTGTTACCATGAGGTCCAAAGATAG 899
Query 893 ACCAAAGCTTGTGTTTGACGTAGTCTGTACTTTGACTGATATGCAGTATGTGGTGTTCCA 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ACCAAAGCTTGTGTTTGACGTAGTCTGTACTTTGACTGATATGCAGTATGTGGTGTTCCA 959
Query 953 TGGCATGGTCAGCACAGAACCAGTGGAGGCTTATCAGGAATTTTACATCCGTCATGTGGA 1012
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 960 TGGCATGGTCAGTACAGAACCAGTAGAGGCTTATCAGGAATTTTACATCCGTCATGTGGA 1019
Query 1013 TGGACTTCCCATAAACTCAGAAGCAGAGCAAGAACGTGTCATACAATGTCTGGAAGCAGC 1072
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 TGGACTTCCCATAAACTCAGAAGCGGAGCAAGAACGTGTCATACAATGTCTGGAAGCAGC 1079
Query 1073 CATTGAGAGGAGAGCATCGGAGGGTTTAGAGCTGGAATTATCAGCAGAAGACCGAGTTGG 1132
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CATTGAGAGGAGAGCATCCGAGGGTTTAGAGCTGGAATTATCAGCAGAAGACCGAGTTGG 1139
Query 1133 TCTTCTCTCAGACATAACCAGAACATTCCGAGAGAACAGCTTAACCATTGTGAGAGCAGA 1192
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TCTCCTCTCAGACATAACCAGAACATTCCGAGAGAACAGCTTAACCATTGTGAGAGCAGA 1199
Query 1193 GATATCAACGCGAGAGGGTAAGGCTAAAGACACGTTCTACGTTACAGACGTGACTGGAAA 1252
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1200 GATCTCAACGCGAGAGGGTAAGGCTAAAGACACGTTCTACGTCACAGACGTGACTGGAAA 1259
Query 1253 CCCGGTTGAATCAAAAATCGTGGAGTCAATCAGACAACAGATAGGAGTAAGCAAGCTGAA 1312
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1260 CCCGGTTGAATCAAAAATCGTGGAGGCAATCAGACAACAGATAGGAGTGAGCAAGCTGAA 1319
Query 1313 GGTGAAGAAGAAGGAGAAGGAGCATTGCTCTGTTCTTGGTACAAGCAGGCCTTCGCACGA 1372
|||||||||||||||| | | ||||||||||||||||||||||||||||||||| ||
Sbjct 1320 GGTGAAGAAGAAGGAG--G-A---TTGCTCTGTTCTTGGTACAAGCAGGCCTTCGCAAGA 1373
Query 1373 AACAACTACAATGGGGTATTTGCTAAGTAACATCTTCAAACCCAAGTAGCTTCA-AGCTT 1431
|||||| | | ||||||||||||||||||||||||||||||| |||| ||||| |||||
Sbjct 1374 AACAAC-A-A-TGGGGTATTTGCTAAGTAACATCTTCAAACCAAAGTCTCTTCAGAGCTT 1430
Query 1432 CAC-CT--ATCTCA-CTCATAGTCATAGAGTGTGTGTGTGCTTTGTATAGGTTAGACAGA 1487
|| || | || | |||| ||||||||| |||| |||||||||| |||||||||
Sbjct 1431 CAAGCTTCACCT-ATCTCAC--TCATAGAGTATGTG----CTTTGTATAGATTAGACAGA 1483
Query 1488 GTAGGGCAT-CATTTAAG 1504
||||||||| | ||||||
Sbjct 1484 GTAGGGCATAC-TTTAAG 1500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60601579795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5