BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G02000.1 Length=748 Score E Sequences producing significant alignments: (Bits) Value Ahg477310 jgi|Araly1|477310|fgenesh2_kg.3__11__AT3G02000.1 845 0.0 Ahg488239 jgi|Araly1|488239|fgenesh2_kg.6__1373__AT5G14070.1 302 3e-81 > Ahg477310 jgi|Araly1|477310|fgenesh2_kg.3__11__AT3G02000.1 Length=619 Score = 845 bits (457), Expect = 0.0 Identities = 586/642 (91%), Gaps = 33/642 (5%) Strand=Plus/Plus Query 87 AAGAGATATCAAAGATGCAATACCAGACAGAATCGTGGGGATCATACAAGATGAGCAGCT 146 |||||| |||||| ||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 4 AAGAGAGATCAAAAATGCAATACCAGACAGAGTCGTGGGGATCATACAAGATGAACAGCT 63 Query 147 TAGGATTCGGCGGTTTGGGGATGGTGGCTGACACTGGTCTGCTTCGTATAGAGTCCCTGG 206 |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 64 TAGGGTTCGGCGGTTTGGGGATGGTGGCTGACACTGGTCTGCTTCGCATAGAGTCGCTGG 123 Query 207 CTTCTGAGAGCGCGGTGGTGATCTTCAGCGTGAGCACGTGCTGCATGTGCCACGCCGTGA 266 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 124 CGGCTGAGAGCGCGGTGGTGATCTTCAGCGTGAGCACGTGCTGCATGTGCCACGCCGTGA 183 Query 267 AGGGTCTCTTCAGAGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTCGACCTCCACCCCT 326 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 AGGGTCTCTTCCGAGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTCGACCTCCACCCCT 243 Query 327 ACGGCGGCGACATCCAGCGAGCCCTCATTCGTCTCCTCGGCTGCTCCGGCTCCTCTTCTC 386 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 244 ACGGCGGCGACATCCAGCGAGCCCTCATTCGTCTTCTCGGCTGCTCCGGCTCCTCTTCTC 303 Query 387 CAGGGTCTCTCCCGGTCGTCTTCATCGGCGGTAAACTGGTTGGAGCTATGGACAGAGTCA 446 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 304 CAGGGTCTCTTCCGGTCGTCTTCATCGGCGGCAAACTGGTTGGAGCTATGGACAGAGTCA 363 Query 447 TGGCTTCTCACATAAACGGCTCTCTCGTTCCTCTTCTCAAAGACGCCGGCGCTCTCTGGC 506 ||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 364 TGGCTTCTCACATCAACGGCTCTCTCGTTCCTCTCCTCAAAGACGCCGGAGCTCTCTGGC 423 Query 507 TCTGATCCCTTCCTCTGctttcttttttcttttctatttgaagttttcttGTAAGAGAAT 566 |||||||||| |||||||| | |||||||| | | | | || | | Sbjct 424 TCTGATCCCTCCCTCTGCTGT-TTTTTTCT-----A----A-G---------A-GA-A-T 460 Query 567 GTGGTGGAGGAAG---ATTAGGAAACTAGTCAATGGCTGTAATGACAGGTTTTAGATTAT 623 ||||||||||||| |||||||||||||||| || |||||||| |||||||||| |||| Sbjct 461 GTGGTGGAGGAAGCTCATTAGGAAACTAGTCAGTG-CTGTAATGGCAGGTTTTAGGTTAT 519 Query 624 AGTTTGTAATTAGAGAGAGAGTTGTTTTAAGCTCACCTTTCTCTGTCT---TC-CTCTTC 679 || ||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 520 AGCTTGTAATTAGAGAGAGAGTTGTTTTAAGCTCACCTTTCTCTGTCTCCCTCGCTCTTC 579 Query 680 TTCATCTCTTATTGATCTTTCGAATGCTCTCATTAAATCATA 721 |||||||||| | |||||||||||||||||||||||||||| Sbjct 580 TTCATCTCTT-TA-ATCTTTCGAATGCTCTCATTAAATCATA 619 > Ahg488239 jgi|Araly1|488239|fgenesh2_kg.6__1373__AT5G14070.1 Length=501 Score = 302 bits (163), Expect = 3e-81 Identities = 273/326 (84%), Gaps = 8/326 (2%) Strand=Plus/Plus Query 194 ATAGAGTCCCTGGCTTCTGAGAGCGCGGTGGTGATCTTCAGCGTGAGCACGTGCTGCATG 253 |||||||| ||||| | |||| |||||||| || |||||||||||||||||||||||| Sbjct 177 ATAGAGTCGATGGCTGCAGAGAATGCGGTGGTTATATTCAGCGTGAGCACGTGCTGCATG 236 Query 254 TGCCACGCCGTGAAGGGTCTCTTCAGAGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTC 313 ||||||||| | ||| |||||||| | |||||||| |||||||||||||||||||||||| Sbjct 237 TGCCACGCCATCAAGCGTCTCTTCCGTGGAATGGGGGTCAGCCCCGCCGTCCACGAGCTC 296 Query 314 GACCTCCACCCCTACGGCGGCGACATCCAGCGAGCCCTCATTCGTCTCCTCGGCTGCTCC 373 ||||||| ||| ||||||| || ||||| ||||| |||||||||||||| ||||| ||| Sbjct 297 GACCTCCTCCCTTACGGCGTTGAAATCCACCGAGCTCTCATTCGTCTCCTGGGCTGTTCC 356 Query 374 GGC--T--C-CT-CTTCTCCAGGGTCTCTCCCGGTCGTCTTCATCGGCGGTAA-ACTGGT 426 || | | || ||||||| ||| | || ||||| || |||||||| || || | |||| Sbjct 357 AGCGGTGGCGCTACTTCTCCGGGGGCACTTCCGGTGGTGTTCATCGGAGGGAAGA-TGGT 415 Query 427 TGGAGCTATGGACAGAGTCATGGCTTCTCACATAAACGGCTCTCTCGTTCCTCTTCTCAA 486 ||||| ||||| ||||| |||||||| || || || ||||| ||||| ||||||||||| Sbjct 416 AGGAGCAATGGAGAGAGTGATGGCTTCACATATCAATGGCTCACTCGTCCCTCTTCTCAA 475 Query 487 AGACGCCGGCGCTCTCTGGCTCTGAT 512 ||| || |||||||| |||||||||| Sbjct 476 AGATGCTGGCGCTCTTTGGCTCTGAT 501 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27562868991 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5