BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02000.1
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477310 jgi|Araly1|477310|fgenesh2_kg.3__11__AT3G02000.1 845 0.0
Ahg488239 jgi|Araly1|488239|fgenesh2_kg.6__1373__AT5G14070.1 302 3e-81
> Ahg477310 jgi|Araly1|477310|fgenesh2_kg.3__11__AT3G02000.1
Length=619
Score = 845 bits (457), Expect = 0.0
Identities = 586/642 (91%), Gaps = 33/642 (5%)
Strand=Plus/Plus
Query 87 AAGAGATATCAAAGATGCAATACCAGACAGAATCGTGGGGATCATACAAGATGAGCAGCT 146
|||||| |||||| ||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 4 AAGAGAGATCAAAAATGCAATACCAGACAGAGTCGTGGGGATCATACAAGATGAACAGCT 63
Query 147 TAGGATTCGGCGGTTTGGGGATGGTGGCTGACACTGGTCTGCTTCGTATAGAGTCCCTGG 206
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 64 TAGGGTTCGGCGGTTTGGGGATGGTGGCTGACACTGGTCTGCTTCGCATAGAGTCGCTGG 123
Query 207 CTTCTGAGAGCGCGGTGGTGATCTTCAGCGTGAGCACGTGCTGCATGTGCCACGCCGTGA 266
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 CGGCTGAGAGCGCGGTGGTGATCTTCAGCGTGAGCACGTGCTGCATGTGCCACGCCGTGA 183
Query 267 AGGGTCTCTTCAGAGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTCGACCTCCACCCCT 326
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 AGGGTCTCTTCCGAGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTCGACCTCCACCCCT 243
Query 327 ACGGCGGCGACATCCAGCGAGCCCTCATTCGTCTCCTCGGCTGCTCCGGCTCCTCTTCTC 386
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 244 ACGGCGGCGACATCCAGCGAGCCCTCATTCGTCTTCTCGGCTGCTCCGGCTCCTCTTCTC 303
Query 387 CAGGGTCTCTCCCGGTCGTCTTCATCGGCGGTAAACTGGTTGGAGCTATGGACAGAGTCA 446
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 304 CAGGGTCTCTTCCGGTCGTCTTCATCGGCGGCAAACTGGTTGGAGCTATGGACAGAGTCA 363
Query 447 TGGCTTCTCACATAAACGGCTCTCTCGTTCCTCTTCTCAAAGACGCCGGCGCTCTCTGGC 506
||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 364 TGGCTTCTCACATCAACGGCTCTCTCGTTCCTCTCCTCAAAGACGCCGGAGCTCTCTGGC 423
Query 507 TCTGATCCCTTCCTCTGctttcttttttcttttctatttgaagttttcttGTAAGAGAAT 566
|||||||||| |||||||| | |||||||| | | | | || | |
Sbjct 424 TCTGATCCCTCCCTCTGCTGT-TTTTTTCT-----A----A-G---------A-GA-A-T 460
Query 567 GTGGTGGAGGAAG---ATTAGGAAACTAGTCAATGGCTGTAATGACAGGTTTTAGATTAT 623
||||||||||||| |||||||||||||||| || |||||||| |||||||||| ||||
Sbjct 461 GTGGTGGAGGAAGCTCATTAGGAAACTAGTCAGTG-CTGTAATGGCAGGTTTTAGGTTAT 519
Query 624 AGTTTGTAATTAGAGAGAGAGTTGTTTTAAGCTCACCTTTCTCTGTCT---TC-CTCTTC 679
|| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 520 AGCTTGTAATTAGAGAGAGAGTTGTTTTAAGCTCACCTTTCTCTGTCTCCCTCGCTCTTC 579
Query 680 TTCATCTCTTATTGATCTTTCGAATGCTCTCATTAAATCATA 721
|||||||||| | ||||||||||||||||||||||||||||
Sbjct 580 TTCATCTCTT-TA-ATCTTTCGAATGCTCTCATTAAATCATA 619
> Ahg488239 jgi|Araly1|488239|fgenesh2_kg.6__1373__AT5G14070.1
Length=501
Score = 302 bits (163), Expect = 3e-81
Identities = 273/326 (84%), Gaps = 8/326 (2%)
Strand=Plus/Plus
Query 194 ATAGAGTCCCTGGCTTCTGAGAGCGCGGTGGTGATCTTCAGCGTGAGCACGTGCTGCATG 253
|||||||| ||||| | |||| |||||||| || ||||||||||||||||||||||||
Sbjct 177 ATAGAGTCGATGGCTGCAGAGAATGCGGTGGTTATATTCAGCGTGAGCACGTGCTGCATG 236
Query 254 TGCCACGCCGTGAAGGGTCTCTTCAGAGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTC 313
||||||||| | ||| |||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 237 TGCCACGCCATCAAGCGTCTCTTCCGTGGAATGGGGGTCAGCCCCGCCGTCCACGAGCTC 296
Query 314 GACCTCCACCCCTACGGCGGCGACATCCAGCGAGCCCTCATTCGTCTCCTCGGCTGCTCC 373
||||||| ||| ||||||| || ||||| ||||| |||||||||||||| ||||| |||
Sbjct 297 GACCTCCTCCCTTACGGCGTTGAAATCCACCGAGCTCTCATTCGTCTCCTGGGCTGTTCC 356
Query 374 GGC--T--C-CT-CTTCTCCAGGGTCTCTCCCGGTCGTCTTCATCGGCGGTAA-ACTGGT 426
|| | | || ||||||| ||| | || ||||| || |||||||| || || | ||||
Sbjct 357 AGCGGTGGCGCTACTTCTCCGGGGGCACTTCCGGTGGTGTTCATCGGAGGGAAGA-TGGT 415
Query 427 TGGAGCTATGGACAGAGTCATGGCTTCTCACATAAACGGCTCTCTCGTTCCTCTTCTCAA 486
||||| ||||| ||||| |||||||| || || || ||||| ||||| |||||||||||
Sbjct 416 AGGAGCAATGGAGAGAGTGATGGCTTCACATATCAATGGCTCACTCGTCCCTCTTCTCAA 475
Query 487 AGACGCCGGCGCTCTCTGGCTCTGAT 512
||| || |||||||| ||||||||||
Sbjct 476 AGATGCTGGCGCTCTTTGGCTCTGAT 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27562868991
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5