BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02010.1
Length=2478
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343089 jgi|Araly1|343089|fgenesh1_pg.C_scaffold_3002852 3768 0.0
> Ahg343089 jgi|Araly1|343089|fgenesh1_pg.C_scaffold_3002852
Length=2835
Score = 3768 bits (2040), Expect = 0.0
Identities = 2295/2416 (95%), Gaps = 26/2416 (1%)
Strand=Plus/Plus
Query 1 ATGAAACTTTATTGCAACT-CTAATGAAGTCCGCTCACGAACTCTTGCCACTTTACGGCA 59
||||||||||||||| | | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGAAACTTTATTGC-AGTGCTAATGAAGTCCGCTCAAGAACTCTTGCCACTTTACGGCA 59
Query 60 GCTCCGACAACCGTCACCGGCGACATTTCTCGACACACGACGTGTTGATGCTCGCATCAT 119
||||||||||||| |||| | | || ||||||||||||||||||||||||||
Sbjct 60 GCTCCGACAACCGCCACC-G-G--------CG--ACACGACGTGTTGATGCTCGCATCAT 107
Query 120 TAAAACTGGCTTCGACACAGATACGTGTCGCTCCAATTTCATCGTCGAGGACCTTCTCAG 179
||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 108 TAAAACTGGCTTCAACACAGATACGTGTCGCTCCAATTTCACCGTGGAGGACCTACTCAG 167
Query 180 GAGAGGTCAAGTTTCTGCTGCACGCAAGGTGTACGACGAAATGCCTCACAAGAACACTGT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 GAGAGGTCAAGTTTCTGCTGCACGCAAGGTGTACGACGAAATGCCTCACAAGAACACTGT 227
Query 240 CTCCACCAATACCATGATTTCC-GGTCACGTGAAGACGGGTGATGTTTCCAGCGCCCGAG 298
|||||||||||||||||||||| ||| ||||||||| ||||||| |||| |||||||||
Sbjct 228 CTCCACCAATACCATGATTTCCGGGT-ACGTGAAGATGGGTGATCTTTCTAGCGCCCGAC 286
Query 299 ACCTTTTTGACGCAATGCCCGACAGAACTGTTGTCACGTGGACTATCTTGATGGGGTGGT 358
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 287 ACCTTTTCGACGCAATGCCCGATAGAACTGTTGTCACTTGGACTATCTTGATGGGCTGGT 346
Query 359 ACGCCCGG-AACAGCCACTTCGATGAAGCTTTCAAGCTTTTCCGTCAGATGTGCAGGTCT 417
||| |||| |||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 347 ACG-CCGGCAACAACCAATTCGATGAAGCTTTCAAGCTTTTCCGTCAAATGTGCAGG--- 402
Query 418 TCTTCCTGTACCCTGCCCGATCATGTCACCTTTACTACGCTTTTACCAGGCTGCAATGAC 477
|| | |||||||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 403 TC-T--TGTACCCTTCCCGATTACGTCACCTTTACTACGCTTTTACCAGGCTGCAATGAC 459
Query 478 GCTGTTCCCCAGAACGCGGTCGGTCAGGTTCATGCTTTTGCCGTCAAGTTAGGCTTTGAT 537
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 460 GCTGTTCCCCAGAACGCGGTCGGTCAAGTTCATGCTTTTGCCGTCAAGTTAGGCTTTGAT 519
Query 538 ACCAACCCCTTTCTCACTGTCTCCAATGTTCTGCTTAAGTCCTACTGTGAGGTAAGGCGA 597
||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 520 ACCAACCTCTTTCTCACTGTCTGCAATGTTCTGCTTAAGTCTTACTGTGAGGTAAGGCGA 579
Query 598 CTCGATTTAGCCTGTGTGTTGTTCGAGGAGATTCCAGAGAAAGACTCTGTCACGTTCAAC 657
|||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||
Sbjct 580 CTCGATTTAGCCTGTGTGTTGTTCGAGGAGATTCTAGATAAAGACTCTGTCACATTCAAC 639
Query 658 ACCCTTATTACAGGGTACGAGAAGGATGGCTTGTACACGGAGTCCATCCATCTCTTTCTT 717
|||||||| |||||||| ||||||||||| |||||||||||| | || ||||||||||||
Sbjct 640 ACCCTTATCACAGGGTATGAGAAGGATGGTTTGTACACGGAGGCGATTCATCTCTTTCTT 699
Query 718 AAAATGCGGCAGTCTGGTCACCAGCCTTCAGATTTCACATTTTCTGGGGTTCTCAAGGCT 777
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 700 AAAATGCGGCAGTCTGGTCACAAGCCTTCAGATTTCACTTTTTCTGGGGTTCTCAAGGCT 759
Query 778 GTTGTTGGGCTGCACGATTTTGCTCTTGGTCAGCAACTCCATGCTCTGTCAGTTACTACC 837
||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 760 GTTGTTGGGTTACACGATTTTGCTCTTGGTCAGCAACTCCATGGTCTGTCAGTTACTACC 819
Query 838 GGCTTCTCCAGGGATGCTTCTGTTGGCAATCAAATTCTTGATTTCTACTCCAAACATGAC 897
||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 820 GGCTTTTCCAGGGATGCTTCTGTTGGGAATCAAATTCTTCATTTCTACTCCAAACATGAC 879
Query 898 CGTGTTCTTGAAACTAGG-ATGCTTTTTGATGAGATGCCTGAGTTGGATTTTGTTTCTTA 956
|||||||||||||||||| || |||||| |||| ||||||||||||||||||||||||||
Sbjct 880 CGTGTTCTTGAAACTAGGAAT-CTTTTTAATGAAATGCCTGAGTTGGATTTTGTTTCTTA 938
Query 957 CAATGTGGTCATCTCAAGCTACTCACAGGCTGATCAATACGAGGCATCCCTCCACTTCTT 1016
||||||||||||||||||||| ||||||||||| || ||||||| ||| ||| |||| ||
Sbjct 939 CAATGTGGTCATCTCAAGCTATTCACAGGCTGAGCAGTACGAGGAATCGCTCAACTTGTT 998
Query 1017 TAGAGAAATGCAGTGCATGGGGTTTGATCGCAGAAACTTCCCTTTCGCGACGATGCTGAG 1076
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 999 TAGAGAAATGCAGTGCATGGGGTTTGATCGCAGAAACTTCCCTTTCGCTACGATGCTGAG 1058
Query 1077 CATCGCTGCTAACTTGTCATCCTTGCAGATGGGTCGACAATTGCACTGCCAGGCCCTCCT 1136
|||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| || |
Sbjct 1059 CATCGCAGCTAACTTGTCATCCTTGCAGGTGGGTCGACAAGTGCACTGCCAGGCCATCGT 1118
Query 1137 GGCAACGGCTGATTCAATCCTTCATGTTGGGAATTCTTTAGTAGATATGTATGCAAAATG 1196
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1119 GGCAACGGCTGATTCAATCCTCCATGTTGGGAATTCTTTAGTAGATATGTATGCAAAATG 1178
Query 1197 CGAAATGTTCGAGGAAGCTGAGTTGATATTCAAGAGTTTACCACAACGGACCACCGTTTC 1256
|||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1179 CGAAATGTTCGACGAAGCTGAGTTGATATTCAAGAGTTTATCACAACGGAGCACCGTTTC 1238
Query 1257 CTGGACTGCCTTGATCTCAGGTTACGTTCAGAAAGGGCTTCATGGAGCTGGGCTTAAGTT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 CTGGACTGCCTTGATCTCAGGTTACGTTCAGAAAGGGCTTCATGGAGCTGGGCTTAAGTT 1298
Query 1317 GTTCACCAAGATGCGAGGATCAAATTTACGAGCAGACCAATCAACTTTTGCTACTGTATT 1376
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 GTTCACCAAGATGCGAGGAGCAAATTTACGAGCAGACCAATCAACTTTTGCTACTGTATT 1358
Query 1377 GAAAGCTTCCGCTAGTTTCGCTTCTCTGTTGCTGGGGAAACAACTCCATGCATTCATAAT 1436
||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1359 GAAAGCTTCCGCTGGTTTTGCTTCTCTGTTGCTCGGGAAACAACTCCATGCATTCATAAT 1418
Query 1437 CAGATCAGGGAACTTGGAAAATGTGTTCTCCGGAAGTGGCCTGGTTGATATGTACGCCAA 1496
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1419 CAGATCAGGGAACTTGGAAAATGTCTTCTCCGGAAGTGGCCTGGTTGATATGTACGCCAA 1478
Query 1497 ATGTGGTTCTATCAAAGATGCAGTTCAAGTATTCGAAGAGATGCCCGATAGAAATGCAGT 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 ATGTGGTTCTATCAAAGATGCAGTTCAAGTATTCGAAGAGATGCCCGATAGAAATGCAGT 1538
Query 1557 TTCCTGGAATGCTTTGATTTCAGCACACGCTGATAACGGAGATGGAGAAGCAGCTATTGG 1616
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1539 TTCCTGGAATGCTTTGATTTCTGCATACGCTGATAACGGAGATGGAGAAGCAGCTATTGG 1598
Query 1617 TGCATTTGCAAAGATGATTGAATCTGGTCTCCAGCCAGATTCAGTCAGCATCTTAGGCGT 1676
||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1599 TGCATTTACAAAGATGATTCAATCTGGTCTCCAGCCAGATTCAGTCAGCATCCTAGGCGT 1658
Query 1677 CTTAACTGCATGTAGTCACTGTGGATTTGTTGAACAAGGAACAGAATATTTCCAGGCAAT 1736
||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1659 CTTGATTGCATGTAGTCACTGTGGATTTGTTGAACAAGGAACAGAATTTTTCCAGGCAAT 1718
Query 1737 GTCTCCAATCTATGGGATAACTCCAAAAAAGAAGCATTATGCATGCATGCTGGATTTGCT 1796
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1719 GTCTCCAATCTATGGGATAACTCCAAAAAAAAAACATTATGCATGCATGCTGGATTTGCT 1778
Query 1797 TGGCAGAAACGGAAGATTTGCAGAAGCAGAGAAGTTGATGGACGAAATGCCCTTTGAGCC 1856
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 TGGTAGAAACGGAAGATTTGCAGAAGCAGAGAAGTTGATGGACGAAATGCCCTTTGAGCC 1838
Query 1857 AGATGAAATTATGTGGTCGTCAGTGTTGAACGCATGTCGGATTCACAAGAATCAAAGCCT 1916
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1839 AGATGAAATTATGTGGTCGTCAGTTTTGAACGCATGTCGGATTTACAAGAATCAAAGCCT 1898
Query 1917 TGCTGAGAGAGCAGCAGAGAAGCTCTTCAGTATGGAGAAGCTCAGGGACGCTGCTGCTTA 1976
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1899 TGCTGAGAGAGCAGCAGAGCAGCTCTTCAGTATGGAGAAGCTCAGGGACGCCGCTGCTTA 1958
Query 1977 TGTAAGCATGTCAAACATCTATGCAGCGGCTGGGGAATGGGAAAAAGTTAGGGATGTGAA 2036
|||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||
Sbjct 1959 TGTAAGCATGTCAAACATCTATGCAGCGGCTGGGAAATGGGAAAACGTTAGGCATGTGAA 2018
Query 2037 GAAAGCAATGCGCGAACGCGGAATCAAAAAGGTTCCGGCTTATAGCTGGGTAGAAGTTAA 2096
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2019 GAAAGCAATGCGCGAACGCGGAATCAAAAAGGTTCCGGCTTATAGCTGGGTTGAAGTTAA 2078
Query 2097 CCACAAGATTCATGTGTTCTCATCAAATGATCAGACACACCCAAACGGAGATGAGATCGT 2156
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2079 CCACAAGATCCATGTGTTCTCATCAAATGATCAAACACACCCAAACGGAGATGAGATCGT 2138
Query 2157 GAGAAAGATCAATGAATTGACAGCTGAGATTGAGAGAGAAGGGTACAAGCCTGACACTAG 2216
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2139 GAAAAAGATCAATGAATTGACAGCTGAGATTGAGAGAGATGGGTACAAGCCTGACACGAG 2198
Query 2217 TTCGGTAGTACAAGACGTAGATGAGCAGATGAAGATTGAGTCGCTTAAGTACCACAGTGA 2276
||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2199 TTCGGTAGTTCAAGACATAGATGAGCAGATGAAGATTGAGTCGCTTAAATACCACAGTGA 2258
Query 2277 ACGTTTAGCCGTTGCATTTGCTCTGATCAGTACACCAGAAGGGTGTCCGATTGTTGTGAT 2336
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2259 ACGTTTAGCTGTTGCATTTGCTCTGATCAGTACACCAGAAGGGTGTCCGATTGTTGTGAT 2318
Query 2337 GAAGAACTTGAGGGCCTGCAGGGATTGCCATGCTGCAATAAAACTAATATCGAAGATTGT 2396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2319 GAAGAACTTGAGGGCCTGCAGGGATTGCCATGCTGCAATAAAACTAATATCGAAGATTGT 2378
Query 2397 AAAGAGGGAGATAACT 2412
|||||||| |||||||
Sbjct 2379 AAAGAGGGTGATAACT 2394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93397280740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5