BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02020.1
Length=2195
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927551 jgi|Araly1|927551|scaffold_300008.1 2905 0.0
Ahg488237 jgi|Araly1|488237|fgenesh2_kg.6__1371__AT5G14060.1 1524 0.0
> Ahg927551 jgi|Araly1|927551|scaffold_300008.1
Length=1732
Score = 2905 bits (1573), Expect = 0.0
Identities = 1681/1734 (97%), Gaps = 4/1734 (0%)
Strand=Plus/Plus
Query 300 TCTTCTTCAGAGCTTATTGAGTAATGGCGGCTTCAATGCAGTTCTACGGAGTTAAAACAC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 TCTTCTTCAGAGCTTATTGAGTAATGGCGGCTTCAATGCAGTTCTACGGAGTTCAAACAC 60
Query 360 CAGAACTTGCCTTAAACTCAAAAAG-GATTGAGTTTAGCTCAAAGGGGCTCAACTTCTCA 418
||||||||||||||||||| ||||| |||||||||| ||||||||||||| || ||||||
Sbjct 61 CAGAACTTGCCTTAAACTC-AAAAGCGATTGAGTTTGGCTCAAAGGGGCTGAATTTCTCA 119
Query 419 GCACTCGTGTCCTCTGCTCGTGTATTCTCTAGAAACGTAGATCGTTCTTGTAAGAACATC 478
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 120 GCACTCGTGTCCTCTGCTCGTGTATTCTCTAGAAACGTAGATCATGCTTGTAAGAACATC 179
Query 479 GCTCTGAGAGTTACTTGTGAAGCGGGAAGAGTGGAGCTGCTAGAGAGAAAAGCCTCAGAG 538
||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||
Sbjct 180 GCTCTGAGAGTTACTTGTGAAGCCGGAAGAGTGGAGCTGCTAGAAAGAAAAGGCTCAGAG 239
Query 539 ACTTTCAAGTTAAACAAAACTGAGAAAAAATTGACCTGTGTAATGAAATTCGGTGGCTCA 598
|||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||
Sbjct 240 ACTTTCAAGTTAAACAGAACTGAGAAAAAATTGACATGTGTAATGAAATTTGGTGGCTCA 299
Query 599 TCAGTGGCATCAGCAGAAAGGATGATACAAGTTGCCAAACTCATACTCAGCTTCCCAGAT 658
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 300 TCAGTGGCATCAGCAGAAAGGATGAAACAAGTTGCCAAACTCATACTCAGCTTCCCAGAC 359
Query 659 GAGAAGCCTGTTGTTGTGCTATCAGCAATGGCAAAGACCACCAATAAGCTTTTGATGGCT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGAAGCCTGTTGTTGTGCTATCAGCAATGGCAAAGACCACCAATAAGCTTTTGATGGCT 419
Query 719 GGGGAGAAGGCTGTTTGCTGCGGTGTCACCAACGTCGACACTATCGAAGAGTTGAGCTAT 778
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 420 GGAGAGAAGGCTGTTTGCTGCGGTGTCACCAACGTCGACACTATTGAAGAGTTGAGCTAT 479
Query 779 ATAAAGGAACTCCATATAAGGACTGCTCATGAGCTTGGAGTGGAAACAGCAGTTATTGCA 838
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 ATAAAGGAACTCCATATAAGGACTGCTCATGAGCTTGGAGTGGAAACATCAGTTATTGCA 539
Query 839 GAACATC-TAGAAGGACTGGAACAGCTTCTTAAAGGCGTCGCAATGATGAAGGAATTAAC 897
||||| | |||||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 540 GAACA-CTTAGAAGGACTGGAACAGCTTCTGAAAGGCATCGCAATGATGAAAGAATTAAC 598
Query 898 TTTACGCTCAAGAGACTACTTGGTTTCATTTGGAGAATGCATGTCCACTAGGCTATTTGC 957
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 599 TTTACGCTCAAGAGATTACTTGGTTTCATTTGGAGAATGCATGTCCACAAGGCTATTTGC 658
Query 958 TGCGTACCTGAACAAAATTGGGCACAAAGCACGACAGTATGATGCATTTGAGATCGGGAT 1017
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 659 TGCGTACTTGAACAAAATTGGGCACAAAGCACGACAGTATGATGCATTTGAGATTGGGAT 718
Query 1018 TATCACCACAGATGACTTCACTAATGCTGATATTCTTGAGGCAACATACCCGGCGGTTTC 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TATCACCACAGATGACTTCACTAATGCTGATATTCTTGAGGCAACATACCCGGCGGTTTC 778
Query 1078 GAAAAAGTTACTTGGTGACTGGAGCAAGGAAAATGCACTCCCCGTTGTCACAGGCTTCCT 1137
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 779 AAAAAAGTTACTTGGTGACTGGAGCAAGGAAAATGCAGTCCCCATTGTCACAGGCTTCCT 838
Query 1138 TGGAAAGGGATGGAGATCTTGTGCTGTAACTACGCTTGGTAGAGGAGGTAGCGATTTGAC 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGGAAAGGGATGGAGATCTTGTGCTGTAACTACGCTTGGTAGAGGAGGTAGCGATTTGAC 898
Query 1198 TGCAACAACGATCGGGAAGGCTTTAGGTTTGCGGGAGATCCAGGTTTGGAAAGATGTGGA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGCAACAACGATCGGGAAGGCTTTAGGTTTGCGGGAGATCCAGGTTTGGAAAGATGTGGA 958
Query 1258 TGGAGTTTTGACTTGTGATCCTAACATTTACTGCGGAGCTCAACCTGTTCCACACTTGAC 1317
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGGAGTTTTGACTTGTGATCCAAACATTTACTGCGGAGCTCAACCTGTTCCACACTTGAC 1018
Query 1318 ATTTGATGAGGCTGCTGAACTTGCTTACTTTGGTGCCCAGGTGTTGCATCCACTTTCCAT 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATTTGATGAGGCTGCTGAACTTGCTTACTTTGGTGCCCAGGTGTTGCATCCACTTTCCAT 1078
Query 1378 GCGCCCAGCGCGAGAAGGTAACATTCCTGTAAGGGTTAAGAACTCTTACAATCCCACTGC 1437
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GCGCCCAGCACGAGAAGGTAACATTCCTGTAAGGGTTAAGAACTCTTACAATCCCACTGC 1138
Query 1438 TCCAGGAACTGTCATCACCAGATCAAGAGACATGAGCAAGGCTGTATTGACCAGCATCGT 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TCCAGGAACTGTCATCACCAGATCAAGAGACATGAGCAAGGCTGTATTGACCAGCATCGT 1198
Query 1498 TCTGAAACGTAATGTCACCATGTTGGACATCACTAGCACCCGTATGCTCGGCCAATATGG 1557
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1199 TCTGAAACGTAATGTTACCATGTTAGACATCACTAGCACCCGTATGCTCGGCCAATATGG 1258
Query 1558 TTTCCTTGCCAAGGTGTTTTCCACATTTGAAAAGTTGGGCATATCTGTGGATGTTGTTGC 1617
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTTCCTTTCCAAGGTGTTTTCCACATTTGAAAAGTTGGGCATATCTGTGGATGTTGTTGC 1318
Query 1618 AACCAGCGAAGTTAGCATTTCTTTGACATTGGATCCTTCAAAGTTCTGTAGCAGAGAGTT 1677
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 1319 AACCAGCGAAGTTAGCATTTCCTTGACATTGGATCCTTCAAAGTTCTGCAGCAGAGAATT 1378
Query 1678 AATTCAACACGAGCTTGATCAGGTGGTGGAGGAACTTGAGAAGATTGCTGTTGTAAATCT 1737
|||||| || ||||||||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct 1379 AATTCAGCATGAGCTTGATCAAGTGGTTGAGGAACTTGAGAAGATTGCTATTGTAAATCT 1438
Query 1738 GCTTCGACACAGATCAATTATCTCTCTCATCGGAAATGTTCAGAGATCATCATTCATATT 1797
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1439 GCTTCGACACAGATCAATTATCTCCCTCATCGGAAATGTTCAAAGATCATCATTCATATT 1498
Query 1798 AGAGAAGGGCTTCCGAGTACTTCGAACCAATGGGATTAATGTCCAGATGATCTCCCAAGG 1857
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 AGAGAAGGGCTTCCGAGTTCTTCGAACCAATGGGATTAATGTCCAGATGATCTCCCAAGG 1558
Query 1858 TGCATCTAAGGTAAACATCTCACTGATAGTGAATGATGATGAGGCGGAGCATTGTGTGAA 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TGCATCTAAGGTAAACATCTCACTGATAGTGAATGATGATGAGGCGGAGCATTGTGTGAA 1618
Query 1918 GGCTCTCCACTCGGCCTTCTTTGAGACAGACACTTGTGAAGCAGTCTCAGAATGCCCGAC 1977
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1619 GGCTCTCCACTCGGCCTTCTTTGAGACAGGCACTTGTGAAGCAGTCTCAGAACGCCCGAC 1678
Query 1978 CGGCTACATCGCTGCCTCTTCGTGAAACCTCTAGGTGCAACCTGCAAGGTCTGA 2031
|||||||| |||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1679 TGGCTACATTGCTGCCTCTTCGCGAAACCTGTAGGTGCAACCTGCAAGGTCTGA 1732
> Ahg488237 jgi|Araly1|488237|fgenesh2_kg.6__1371__AT5G14060.1
Length=2205
Score = 1524 bits (825), Expect = 0.0
Identities = 1382/1649 (84%), Gaps = 46/1649 (3%)
Strand=Plus/Plus
Query 322 AATGGCGGCTTCAATGCAGTTCTACGGAGTTAAAACACCAGAACTTGCCTTAAACTCAAA 381
|||| |||||||| |||| || |||||||||||| | |||| ||||| |||| |||||
Sbjct 402 AATGACGGCTTCATTGCACTTGTACGGAGTTAAAGCTCCAGTGCTTGCGTTAAGTTCAAA 461
Query 382 AAGGATTGAGTTTAGCTCAAAGGGGCTCAAC-TTCTCAG-CACTCGTGTCC-TC-TGCTC 437
||| |||| ||| ||||||||||| | || || |||| || || || || | |
Sbjct 462 GAGGCTTGATTTTGGCTCAAAGGGG-ACTACTTTTTCAGTTAC-ATTG-CCTTCAAG-TA 517
Query 438 GTGTA-TTCTCTAGAAACGTAGATCGTTCTTGTAAGAACATCGCTCTGAGAGTTACTTGT 496
||| | || | |||| |||||| | |||||||| ||| || ||| ||||||||| ||||
Sbjct 518 GTGCAGTT-TTTAGAGCCGTAGAGCATTCTTGTAGGAATATAGCTTTGAGAGTTAGTTGT 576
Query 497 GAAGCGGGAAGAGTGGAGCTGCTAGAGAG-AAA-AGCCTCAGAGACTTTCAAGTT-AAAC 553
|||| | |||||| || |||| || || ||| |||| | ||||||| ||| || || |
Sbjct 577 GAAGATGTAAGAGTCGATTTGCTTGAAAGAAAAGAGCC-C-GAGACTTGCAA-TTCAAGC 633
Query 554 AAAACTGAG-AAAAAATTGACCTGTGTAATGAAATTCGGTGGCTCATCAGTGGCATCAGC 612
||||| | ||| | ||||| ||||||||||||||||| || |||||||||| ||||||
Sbjct 634 GCAACTG-GCAAAGAGTTGACATGTGTAATGAAATTCGGCGGTTCATCAGTGGAATCAGC 692
Query 613 AGAAAGGATGATACAAGTTGCCAAACTCATACTCAGCTTCCCAGATGAGAAGCCTGTTGT 672
||| ||||||| | |||||||||| || ||||||||||| |||||||||| ||| || |
Sbjct 693 AGAGAGGATGAAAGAAGTTGCCAATCTTATACTCAGCTTTCCAGATGAGAGGCCCGTCAT 752
Query 673 TGTGCTATCAGCAATGGCAAAGACCACCAATAAGCTTTTGATGGCTGGGGAGAAGGCTGT 732
|||| |||||||||||| |||||| || ||||||||||||| |||||| ||||||||||
Sbjct 753 TGTGTTATCAGCAATGGGAAAGACGACTAATAAGCTTTTGAAGGCTGGAGAGAAGGCTG- 811
Query 733 TTGC-TGCGGTGTCACCAACGTCGACACTATCGAAGAGTTGAGCTATATAAAGGAACTCC 791
|| | ||||||||||| ||||| || | ||| ||||| ||||||| ||||||||||||||
Sbjct 812 TTACTTGCGGTGTCACTAACGTAGAAAGTATTGAAGAATTGAGCTTTATAAAGGAACTCC 871
Query 792 ATATAAGGACTGCTCATGAGCTTGGAGTGGAAACAGCAGTTATTGCAGAACATCTAGAAG 851
|| |||| ||||||||||||||||||||||||||| | ||||||| | |||| |||||||
Sbjct 872 ATTTAAGAACTGCTCATGAGCTTGGAGTGGAAACAACGGTTATTGAAAAACACCTAGAAG 931
Query 852 GACTGGAACAGCTTCTTAAAGGCGTCGCAATGATGAAGGAATTAACTTTACGCT-CAAGA 910
|||| | ||||||||||||||| | |||||||||| |||||||| ||||| | ||||
Sbjct 932 GACTACACCAGCTTCTTAAAGGCATATCAATGATGAAAGAATTAACCTTACG-TACAAGG 990
Query 911 GACTACTTGGTTTCATTTGGAGAATGCATGTCCACTAGGCTATTT-GCTGCGTACCTGAA 969
||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| || ||
Sbjct 991 GACTACTTGGTTTCATTTGGAGAGTGCATGTCCACTAGGCT-TTTCTCTGCGTATCTCAA 1049
Query 970 CAAAATTGGGCACAAAGCACGACAGTATGATGCATTTGAGATCGGGATTATCACCACAGA 1029
|||||||| |||||||| || || ||||||||||||||||||||| |||| ||||||||
Sbjct 1050 TAAAATTGGCCACAAAGCGCGTCAATATGATGCATTTGAGATCGGGTTTATTACCACAGA 1109
Query 1030 TGACTTCACTAATGCTGATATTCTTGAGGCAACATACCCGGCGGTTTCGAAAAA-GTTAC 1088
||||| || ||||||||||| ||||| ||||| ||||| || || || ||||| ||
Sbjct 1110 CGACTTTACAAATGCTGATATACTTGAAGCAACGTACCCTGCCGTCTC-AAAAACACTAG 1168
Query 1089 TTGGTGACTGGAGCAAGGAAAATGCACTCCCCGTTGTCACAGGCTTCCTTGGAAAGGGAT 1148
|||| || |||||||||||||||||| |||| ||||| || |||||||| ||||||||||
Sbjct 1169 TTGGCGATTGGAGCAAGGAAAATGCAGTCCCTGTTGTTACTGGCTTCCTCGGAAAGGGAT 1228
Query 1149 GGAGATCTTGTGCTGTAACTACGCTT-GGTAGAGGAGGTAGCGATTTGACTGCAACAACG 1207
|||| ||||||||| |||||||| || ||||| || || ||||| ||||| || ||||||
Sbjct 1229 GGAGGTCTTGTGCTATAACTACG-TTGGGTAGGGGTGGCAGCGACTTGACGGCTACAACG 1287
Query 1208 ATCGGGAAGGCTTTAGGTTTGCGGGAGATCCAGGTTTGGAAAGATGTGGATGGAGTTTTG 1267
|| ||||| || ||||| ||||||| || ||||||||||| ||||| ||||||||||||
Sbjct 1288 ATTGGGAAAGCGTTAGGACTGCGGGAAATTCAGGTTTGGAAGGATGTAGATGGAGTTTTG 1347
Query 1268 ACTTGTGATCCTAACATTTACTGC-GGAGCTCAACCTGTTCCACACTTGACATTTGATGA 1326
||||||||||||||||| || | | ||||||||| |||||||| |||| || || |||||
Sbjct 1348 ACTTGTGATCCTAACATATA-TCCTGGAGCTCAATCTGTTCCATACTTAACGTTCGATGA 1406
Query 1327 GGCTGCTGAACTTGCTTACTTTGGTGCCCAGGTGTTGCATCCACTTTCCATGCGCCCAGC 1386
||| ||||| ||||||||||||||||||||||||||||||||||| || ||| | |||||
Sbjct 1407 GGCAGCTGAGCTTGCTTACTTTGGTGCCCAGGTGTTGCATCCACTGTCTATGAGGCCAGC 1466
Query 1387 GCGAGAAGGTAACATTCCTGTAAGGGTTAAGAACTCTTACAATCCCACTGCTCCAGGAAC 1446
|||| || |||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 1467 AAGAGATGGCGACATTCCTGTAAGGGTGAAGAACTCGTACAACCCCACTGCTCCAGGAAC 1526
Query 1447 TGTCATCACCAGATCAAGAGACATGAGCAAGGCTGTATTGACCAGCATCGTTCTGAAACG 1506
||||||||||||||||||||||||||| ||||| || |||| ||||| |||||||||||
Sbjct 1527 TGTCATCACCAGATCAAGAGACATGAGTAAGGCCGTGCTGACAAGCATTGTTCTGAAACG 1586
Query 1507 TAATGTCACCATGTTGGACATCA-CTAGCACCCGTATGCTCGGCCAATATGGTTTCCTTG 1565
||||| |||||||||||||| | | |||||||||||||| ||||| |||||||||||||
Sbjct 1587 CAATGTGACCATGTTGGACAT-AGCAAGCACCCGTATGCTTGGCCAGTATGGTTTCCTTG 1645
Query 1566 CCAAGGTGTTTTCCACATTTGAAAAGTTGGGCATATCTGTGGATGTTGTTGCAACCAGCG 1625
||||||||||| ||||||||||| | || |||||||| || |||||||| ||||| || |
Sbjct 1646 CCAAGGTGTTTACCACATTTGAAGATTTAGGCATATCGGTCGATGTTGTGGCAACAAGTG 1705
Query 1626 AAGTTAGCATTTCTTTGACATTGGATCCTTCAAAGTTCTGTAGCAGAGAGTTAATTCAAC 1685
||||||| || || |||||||||||||| ||||| |||| | |||||||||||||| |
Sbjct 1706 AAGTTAGTATATCATTGACATTGGATCCAGCAAAGCTCTGGGGTAGAGAGTTAATTCAGC 1765
Query 1686 ACG-A---G--CTTGATCAGGTGGTGGAGGAACTTGAGAAGATTGCTGTTGT-AAATCTG 1738
| | | || ||| | ||||||| || || || |||||||||||||| ||| |||
Sbjct 1766 GGGTAAATGAACTGGATAATTTGGTGGAAGAGCTAGAAAAGATTGCTGTTGTGAAA-CTG 1824
Query 1739 CTTC-GACACAGATCAATTATCTCTCTCATCGGAAATGTTCAGAGATCATCATTCATATT 1797
|| | | | ||||||||| ||||||||||| ||||||||||||| ||| ||| |||||||
Sbjct 1825 CTGCAG-CGCAGATCAATCATCTCTCTCATAGGAAATGTTCAGAAATCCTCACTCATATT 1883
Query 1798 AGAGAAGG-GCTTCCGAGTACTTCGAACCAATGGGATT-AATGTCCAGATGATCTCCCAA 1855
|||||||| | |||| ||||||| ||| |||||| | | ||||| ||||||||||| ||
Sbjct 1884 AGAGAAGGTG-TTCCAAGTACTTAGAAGCAATGG-AGTGAATGTGCAGATGATCTCGCAG 1941
Query 1856 GGTGCATCTAAGGTAAACATCTCACTGATAGTGAATGATGATGAGGCGGAGCATTGTGTG 1915
||||||||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||
Sbjct 1942 GGTGCATCTAAGGTAAACATCTCGTTGATAGTGAATGATGAAGAGGCAGAGCAATGTGTG 2001
Query 1916 AAGGCTCTCCACTCGGCCTTCTTTGAGAC 1944
| |||||||||||| ||||||||||||||
Sbjct 2002 AGGGCTCTCCACTCCGCCTTCTTTGAGAC 2030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82617741405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5