BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02030.1
Length=2641
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477308 jgi|Araly1|477308|fgenesh2_kg.3__9__AT3G02030.1 1336 0.0
Ahg493863 jgi|Araly1|493863|fgenesh2_kg.7__3296__AT5G41120.1 93.5 7e-18
> Ahg477308 jgi|Araly1|477308|fgenesh2_kg.3__9__AT3G02030.1
Length=2657
Score = 1336 bits (723), Expect = 0.0
Identities = 809/849 (95%), Gaps = 12/849 (1%)
Strand=Plus/Plus
Query 891 ATCCTAGCTGATACATTTCGGAGAGAAACTCTTCTGTGGAAGCTCAAGTTGCTTGATGCC 950
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 859 ATCCTAGCTGATACATTTCGGAGAGAAACACTTCTGTGGAAGCTCAAGTTGCTTGATGCC 918
Query 951 GCTGCTATTTTTGCCAATGCACATCTACATCTAGTACAAGCTCAGACTCTAATTCTGTCC 1010
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 919 GCTGCTATTTTTGCCAATGCACATCTACATCTAGTACAAGCGCAGACTCTAATTCTGTCC 978
Query 1011 AGCGGAAATGACCAAATACTACCCAGTAAATATGAAGGCAAACGACTTCGGAAAAAACTG 1070
|| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 979 AGTGGAAATGACCAAATCCTACCCAGTAAATTTGAAGGCAAACGACTTCGGAAAAAACTA 1038
Query 1071 CTTAAATGTGAAGTCCGCTCATTCAAAGACAACGGCCATTGCCTTTTTCTGGAGGACGGC 1130
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1039 CCTAAATGTGAAGTCCGCTCATTCAAAGACAACGGGCATTGCCTTTTTCTGGAGGACGGC 1098
Query 1131 ATTGATCTGGTCAGTATCATAAAAGCCACTTCTTTTTACCGGCGTGGGTCTCGTCAGGAT 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1099 ATTGATCTGGTCAGTATCATAAAAGCCACTTCTTTTTACCGGCGTGGGTCTCGCCAGGAT 1158
Query 1191 TACGTCTCCGACTACATCCCACCAACCATCTCTGAGTTTAACAAAAGTTATGGGATCAAC 1250
||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 1159 TACGTCTCCGACTACATCCCACCAACCATCTCTGAATTTAACAAAAGTTATGGGGTTAAC 1218
Query 1251 AGGCTTCTTGAGGTGATCATGGGCCCTGTATTTCTGTCGACGACAGAAGATGGGAAAGTG 1310
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1219 AGGCTTCTTGAGGTGATCATGGGACCTGTATTTCTGTCGACGACAAAAGATGGGAAAGTG 1278
Query 1311 GTGAGGGGTCTTGGGGGAATTCCATCAGAAGGACCTGTACTGTTGGTGGGCAATCACATG 1370
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1279 GTGAGGGGTCTTGGGGGAATACCATCGGAAGGACCTGTACTGTTGGTGGGCAATCACATG 1338
Query 1371 CTACTGGCGAGTGACAAAATATCACTCCCAGGACAATTTGTTCACGAGAGGAACATCAAT 1430
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1339 CTACTGGCGAGTGACAAAATATCACTCCCAGGTCAATTTGTTCACGAGAGGAACATCAAT 1398
Query 1431 TTGCGGCCTCTTGTGCACCCCATGATGTTTTCGAGACTGAGAGATGGATTGTTACCTGAT 1490
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1399 TTGCGGCCTCTTGTGCATCCCATGATGTTTACGAGACTGAGAGATGGATTGTTACCTGAT 1458
Query 1491 GTGTCTGTTTATGACATGCTCAGGATGATGGGGTCGGTCCCCATCTCGGGCACTCACCTC 1550
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1459 GTGTCTGTTTACGACATGCTCAGGATGATGGGGTCGGTCCCCATCTCGGGCACGCACCTC 1518
Query 1551 CATAATCTCTTGTCTGCTAAATCCCATATTCTGTTGTTTCCAGGAGGCATCCGCGAAGCT 1610
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1519 CATAATCTCTTGTCTGCTAAATCCCATATTCTGTTGTTCCCAGGAGGCATCCGCGAAGCT 1578
Query 1611 CTACACC--AA----------TACAAGTTGATGTGGCCAGAGAAAGCAGAGTTTGTTAGA 1658
||||||| || ||||||||||||||||||||||| ||||||||||| |||
Sbjct 1579 CTACACCGTAAGGGAGAAGAATACAAGTTGATGTGGCCAGAGAAGGCAGAGTTTGTGAGA 1638
Query 1659 GCTGCAGCCAAATTTGGAGCCAAAATAGTCCCCTTTTGTGGGGTTGGGGAAGATGATTTT 1718
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1639 GCAGCAGCCAAATTTGGAGCCAAAATAGTGCCCTTTTGTGGGGTTGGCGAAGATGATTTT 1698
Query 1719 TTAAAAGTG 1727
|||| ||||
Sbjct 1699 TTAAGAGTG 1707
Score = 1258 bits (681), Expect = 0.0
Identities = 777/823 (94%), Gaps = 8/823 (1%)
Strand=Plus/Plus
Query 72 CTCCATGGACGAACCACCACAACTACTACTAGCTTC-TCTTTGCCTATGGCGGCCACCGG 130
||||||||||| |||||| || | |||||||||||| ||||| || ||||||||||||||
Sbjct 1 CTCCATGGACGCACCACCTCAGCAACTACTAGCTTCTTCTTT-CCCATGGCGGCCACCGG 59
Query 131 ATTTCACACGCTCTCTGCCGTCGGATTATTCAACGGAGAGAAGCACAAGCACCCCCTTGG 190
|||||||| |||||||||||||||||||| ||||||||||||||||||||| | |||||
Sbjct 60 ATTTCACATGCTCTCTGCCGTCGGATTATGCAACGGAGAGAAGCACAAGCAACTTCTTGG 119
Query 191 AGTAACCCTACCCCCGGCACGCCGATTCTCCGCTTCTGTCACCGTTTTTAGCTCGAGGCT 250
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 120 TGTAACCCTACCACCGGCACGCCGATTCTCCGCTTCTGTCACCGCTTTTAGCTCGAGGCT 179
Query 251 TGTGGACTACGAGCAGCCATTCGTTAAGAGCTTCT-GGAACTACCTCGAGGCGGCTAAGG 309
|||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||
Sbjct 180 TGTGGACTACGAGCAGCCATTCGTTAAGGGCTTCTGGGAA-TACCTCGAGGCGGCTAAGG 238
Query 310 ATTTCATCAGACCGGAAGACAACGGCCCATCTCGCTGGTTCTCTCCCCTCGAAAGAAGCA 369
||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||
Sbjct 239 ATTTCATCAGACCGGAAGACAACAGCCCGTCTCGCTGGTTCTCTCCCCTCGAAAAAAGCA 298
Query 370 AGGATCCATGTGACGGTGCCCCGCTCCTTCTCTTCCTACCTGGTATCGACGGAAATGGAC 429
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 299 AGGATCCATGTGACGGCGCCCCGCTGCTTCTGTTCCTACCTGGTATCGACGGAAATGGAC 358
Query 430 TCGGGCTAATAAGGCAGCACCAGAAACTTGGACAGATGTTTGATATCTGGTGCTTGCACA 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TCGGGCTAATAAGGCAGCACCAGAAACTTGGACAGATGTTTGATATCTGGTGCTTGCACA 418
Query 490 TACCAGCGAGCAATCGCTCTTCTTTCACAGATCTAGTCGCCATGGTTGAAACAACTGTCA 549
||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||
Sbjct 419 TACCAGCGAGCAATCGCACTTCATTCACAGATCTAGTCGCCATGGTTGAAAGAACTGTCA 478
Query 550 AATATGAAAATCAACGATCACCTGGGAAACCCATATATCTTGTTGGAGAATCTCTCGGCG 609
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 AATCTGAAAATCAACGATCACCCGGGAAACCCATATATCTTGTTGGAGAATCTCTCGGCG 538
Query 610 CCTGCATTGCACTCGCTGTTGCAGCCTGTAACCCTGATATTGATCTTG-TCTTGATTCTT 668
||||||| |||||||||||||| |||||||||||||| |||||||| | |||||||||||
Sbjct 539 CCTGCATAGCACTCGCTGTTGCTGCCTGTAACCCTGAAATTGATCT-GCTCTTGATTCTT 597
Query 669 TCTAACCCAGCTACATCATTTGGGCATTCTT-CGCTGCAACATCTTGCTCCCCTGGTTAA 727
|| |||||||||||||||| |||| |||||| | ||||||||||||||||||||||||||
Sbjct 598 TCAAACCCAGCTACATCATATGGGAATTCTTTC-CTGCAACATCTTGCTCCCCTGGTTAA 656
Query 728 AGCCTTGCCAGACCAACTTAATCTTGCATTTCCTTCCGTGCTAAGCTTGATTCCAGGTGG 787
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 657 AGCCTTGCCAGACCAATTTGATCTTGCATTTCCTTCCGTGTTAAGCTTGATTCCAGGTGG 716
Query 788 CCCTTTAAAAAGGATGGTTGCTCACTGGGTCAGAGGACTTCCGGAGACGGAAACAGCTGC 847
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 717 CCCTTTAAAAAGGATGGTTGCTCACTGGGTCAGGGGACTTCCGGAGATGGAAACAGCTGC 776
Query 848 AAACATTTTTCAAGATTTGGTGATAACATCCACATTAACCTCT 890
|||||||||||||||||||||||||||||| |||||||| |||
Sbjct 777 AAACATTTTTCAAGATTTGGTGATAACATCGACATTAACTTCT 819
Score = 649 bits (351), Expect = 0.0
Identities = 454/500 (91%), Gaps = 21/500 (4%)
Strand=Plus/Plus
Query 2150 TCATAACCCGTCTGCAAACAGATATATTCCATAACATTTGGGCTTTCACCTCATGAATCA 2209
||||| ||||| ||||||||| ||||| |||||||||||||||||| |||| |||
Sbjct 2170 TCATAGCCCGTATGCAAACAGTTATATCCCATAACATTTGGGCTTT----TCAT--CTCA 2223
Query 2210 TGATAGCAGCACCCACATTGTCAAATTTTCCCGATACAAAACACTATCAC-ATTTTGGGA 2268
||| | | |||||||||||||||||| ||| | || |||||||||||| |||||||||
Sbjct 2224 TGA-A--TG-ACCCACATTGTCAAATTTCCCCTAAAC-AAACACTATCACAATTTTGGGA 2278
Query 2269 AACTAGAGATCCTAACTAAA--AG---AGA--TAGTTTTAGTGTTGTATCAACTCGGGAA 2321
|||||||||||||||||||| || ||| | ||||||||||||||||||||| ||||
Sbjct 2279 AACTAGAGATCCTAACTAAACGAGATAAGAGTTGGTTTTAGTGTTGTATCAACTCAGGAA 2338
Query 2322 TGAGCTTGAGAAGAAAGGAGAGCTCTCTGTCAGAGAAGTTAGGCTTTGGCTTAGTACCAT 2381
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 2339 TGAGCTTGAGAAGAAAAGAGAGCTCTCTCTCAGAGAAGTTAGGCTTTGGCTTAGTATCAT 2398
Query 2382 CAGCATCTCTGTTGGATGGCTTCATCATCTCCCTCACCGCCTCTGTTATCTCCTCCACAT 2441
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 2399 CAGCATCTCTGTTGGATGGCTTCATCATCTCTCTCACGGCCTCTGTTATCTCCTCTACAT 2458
Query 2442 GATCAACTATCACTCCCTCTATCCCCATCAAATGCTGCATGTAAACCGCCTCGGCTACAT 2501
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 2459 GATCAACTATGACTCCCTCTATTCCCATCAAATGCTGCATGTAAACCGCCTCCGCAACAT 2518
Query 2502 TGTTTAGCTTTCCGTATGTCATCAGAGAGAGCTTGGATTCTTTTATCTTGTTGACAAG-A 2560
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 2519 TGTTGAGCTTTCCGTAGGTCATCAGAGAGAGCTTGGATTCTTTTATCTTGTTGAC-AGCA 2577
Query 2561 GCGGGGTTGCGGAATACTCCCTTCACCTCCGAGACAATCCCTTGGAGGCCTCCTTCTAAA 2620
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2578 GCGGGGTTGCGGAATACTCCCTTCACCTCCGAGACAATCCCTTGAAGGCCTCCTTCTAAA 2637
Query 2621 CATACTTTGATTGCTTCCTC 2640
|||| |||||||||||||||
Sbjct 2638 CATAATTTGATTGCTTCCTC 2657
Score = 636 bits (344), Expect = 0.0
Identities = 382/400 (96%), Gaps = 4/400 (1%)
Strand=Plus/Plus
Query 1725 GTGGTCGTAGACTACAATGACCAGATAAAGGTTCCGTTGGTGAAAGAGGTGCTAAAAAGA 1784
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1772 GTGGTTGTAGACTACAATGACCAGATAAAGGTCCCGTTGGTGAAAGAGGTGCTAAAAAGA 1831
Query 1785 GTGACAGCGGAAGGCCCGGAGGTGAGGGGAAGCCTGGAAGGAGAAGAGGGGAACCAAGAC 1844
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1832 GTGACAGCGGAAGGCCCGGAGGTTAGGGGAAGTCTGGAAGGAGAAGAGGGGAACCAAGAC 1891
Query 1845 TTCCACATGCCAGGAGTGATACCAAAGTGTCCAGGGAGATACTATTATTACTTTGGGAAG 1904
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1892 TTCCACATGCCAGGAGTGATACCAAAGTGGCCAGGGAGATACTATTATTACTTTGGGAAG 1951
Query 1905 GAGATAAAGACGGGAGCAGAAGAGTTGAGAGACAGAGACAAGGCAAAGGAGGTGTACGCA 1964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 GAGATAAAGACGGGAGCAGAAGAGTTGAGAGACAGAGACAAGGCAAAGGAGGTGTACGCA 2011
Query 1965 GACGTGAAGAAGGAGGTCGAGAGATGCATAAAGTTTGTGAAGCAGAGAAGGGAGGAGGAT 2024
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2012 GAGGTGAAGAAAGAGGTCGAGAGATGCATAAAGTTTGTGAAGCAGAGAAGGGAGGAGGAT 2071
Query 2025 C-CTTACAGACCTCTCTTGCCCCGTCTCAAATATCACCTGCAGCACGGCCTCCTCTCCCA 2083
| || ||||||| ||||||||||||||| | |||||||||||||| ||||||||||| ||
Sbjct 2072 CTCT-ACAGACCCCTCTTGCCCCGTCTCCACTATCACCTGCAGCATGGCCTCCTCTCGCA 2130
Query 2084 AGTCCCCACTTTCCACTTTT-GAATACATTTACATAATTT 2122
|||||||||||||| ||||| |||||| |||||| |||||
Sbjct 2131 AGTCCCCACTTTCC-CTTTTTGAATACTTTTACACAATTT 2169
> Ahg493863 jgi|Araly1|493863|fgenesh2_kg.7__3296__AT5G41120.1
Length=2179
Score = 93.5 bits (50), Expect = 7e-18
Identities = 85/102 (83%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 578 ACCCATATATCTTGTTGGAGAATCTCTCGGCGCCTGC-ATTGCACTCGCTGTTGCAGCCT 636
||| |||||| | |||||||||||| | || | || | |||| || | ||||||||||
Sbjct 534 ACCAATATATATAGTTGGAGAATCTATTGGAG-CTTCTCTTGCTCTAGATGTTGCAGCCA 592
Query 637 GTAACCCTGATATTGATCTTGTCTTGATTCTTTCTAACCCAG 678
||||||||||||||||||||||||||||||| |||| ||||
Sbjct 593 GTAACCCTGATATTGATCTTGTCTTGATTCTGGCTAATCCAG 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99605990675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5