BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02050.1
Length=2779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477306 jgi|Araly1|477306|fgenesh2_kg.3__7__AT3G02050.1 4026 0.0
> Ahg477306 jgi|Araly1|477306|fgenesh2_kg.3__7__AT3G02050.1
Length=2622
Score = 4026 bits (2180), Expect = 0.0
Identities = 2491/2639 (94%), Gaps = 29/2639 (1%)
Strand=Plus/Plus
Query 1 GAGGAAAATTGCTAATCGGAGAAACAAGTGAGTGGAGGAGAGAGACAGATATAAAGGTTC 60
||||||| |||||||||||||||| |||||||||| |||||| | ||||| ||||||||
Sbjct 1 GAGGAAACTTGCTAATCGGAGAAAGGAGTGAGTGGATGAGAGAAAAAGATACAAAGGTTC 60
Query 61 CCGCGTTGAGAGAGTATTTGCTAATTAATTAAGGTGGATATTTGATGCTAGGAGAGGA-G 119
||||||| |||||||| |||||||||||||||||||||||| | | |||| |
Sbjct 61 CCGCGTT--GAGAGTATCAATTAATTAATTAAGGTGGATATTTGA--CAAATAGAGAATC 116
Query 120 AGT-GAGAGATAAGATGGGTTTCGTCTGAAGAGCTCCAACTTGATTCGCTCAATTGATCT 178
| | ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct 117 ATTAGAGAGATAAGATGGGTTTCGTTTGAAGAGCTCCAACCTGATTCGCTCAATTGA--T 174
Query 179 CTTTTGTATCGACAACCTGCGATGGCGCCGGCGGAATCTGGAGTCTCTCCCCGTCGGAAT 238
| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||
Sbjct 175 C-TTTGTATCGACAACCTGAGATGGCGGCGGCGGAATCTGGAGTCTCTCCCCGTCGAAAT 233
Query 239 CCTTCTCAACTCTCGTGGATGAATCTCTCTAGTAACTTGATTTTGGCCTACCAGAGCTTT 298
||||| ||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 234 CCTTCACAACTGTCGTGGATG---------AGTAACTTGATTTTGGCCTACCAGAGCTTT 284
Query 299 GGTGTAGTCTACGGTGATCTCAGTACTTCTCCTCTTTATGTCTTCCCTAGCACATTTATT 358
||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||
Sbjct 285 GGTGTAGTCTACGGTGACCTCAGTACATCTCCTCTTTATGTCTTCCCTTGCACATTTATT 344
Query 359 GGAAAGTTGCACAAGCATCACAACGAGGATGCCGTATTTGGTGCTTTCTCTTTGATTTTC 418
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 345 GGAAAGTTGCACAAGCATCACAACGAGGAAGCCGTTTTTGGTGCTTTCTCTTTGATTTTC 404
Query 419 TGGACCCTCACGCTCATTCCCCTTCTCAAATACCTTCTTGTATTACTGAGTGCCGATGAC 478
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 TGGACCCTCACGCTCTTTCCCCTTCTCAAATACCTTCTTGTATTACTGAGTGCCGATGAC 464
Query 479 AATGGAGAAGGCGGAACATTTGCTCTCTATTCCCTGCTTTGTAGGCATGCTAAGCTTAGC 538
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 465 AACGGAGAAGGCGGAACATTTGCTCTCTATTCGCTGCTTTGTAGGCATGCCAAGCTTAGC 524
Query 539 TTACTTCCTAACCAGCAAGCTGCTGATGAGGAGCTCTCAGCTTACAAGTTTGGTCCTTCC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 TTACTTCCTAACCAGCAAGCTGCTGATGAGGAGCTCTCAGCTTACAAGTTTGGTCCTTCC 584
Query 599 ACGGATACT-GTAACTTCATCCCCCTTCAGAACATTTCTTGAAAAGCACAAAAGGCTGAG 657
||||||||| | |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 585 ACGGATACTAG-AACTTCATCCCCCTTCAGAAGATTTCTTGAAATGCACAAAAGGCTGAG 643
Query 658 GACCGCTTTGCTGCTTGTTGTACTTTTTGGAGCTGCTATGGTCATTGGAGACGGGGTTCT 717
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 644 GACCGCTTTGCTGCTTCTTGTACTTTTTGGAGCTGCTATGGTCATAGGAGACGGGGTTCT 703
Query 718 GACCCCAGCTTTATCAGTTCTGTCGTCCTTGTCAGGCTTGCAAGCTACAGAGAAG-AATG 776
|||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||| |||
Sbjct 704 GACCCCAGCTATATCAGTTCTGTCGTCCATGTCTGGCTTGCAAGCTACAGATAAGAAAT- 762
Query 777 TGACTGATGGCGAACTACTGGTGCTTGCCTGTGTCATATTGGTCGGACTGTTTGCTTTGC 836
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 763 TGACTGATGGTGAACTTCTGGTACTTGCCTGTGTCATATTGGTCGGACTGTTTGCTTTGC 822
Query 837 AACATTGTGGTACTCACAGGGTGGCTTTCATGTTTGCACCAATTGTGATCATCTGGCTTA 896
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 AACACTGTGGTACTCACAGGGTGGCTTTCATGTTTGCACCAATTGTGATCATCTGGCTTA 882
Query 897 TTTCAATATTCTTCATCGGTTTATACAACATCATCCGTTGGAATCCAAAGATAATACATG 956
|||||||| ||||||||||||||||||||||| | | |||||||||| |||||||||||
Sbjct 883 TTTCAATACTCTTCATCGGTTTATACAACATCTTACACTGGAATCCAACGATAATACATG 942
Query 957 CAGTTTCCCCACTGTATATCATCAAATTCTTCAGAGTGACTGGTCAAGATGGATGGATAT 1016
|| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 943 CAATTTCCCCGCTTTATATCATCAAATTCTTCAGAGTGACTGGTCAAGATGGATGGATTT 1002
Query 1017 CTCTTGGAGGGGTTCTTCTTTCTGTAACAGGTACTGAAGCCATGTTTGCAAATCTTGGCC 1076
||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1003 CTCTTGGAGGGATTCTTCTTTCTGTAACAGGTACTGAAGCTATCTTTGCAAATCTTGGCC 1062
Query 1077 ATTTCACCTCGGTCTCAATCAGAGTTGCTTTCGCCGTTGTCGTGTACCCCTGTCTGGTGG 1136
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1063 ATTTCACCTCGGTCTCAATCAGACTTGCTTTCGCCGTTGTCGTGTACCCCTGTCTGGTGG 1122
Query 1137 TACAATACATGGGCCAGGCAGCTTTCCTGTCAAAGAACCTCGGGTCTATTCCTAACAGTT 1196
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1123 TACAATACATGGGCCAGGCAGCTTTCTTGTCAAAGAACCTCGGGTCTATTCCTAACAGTT 1182
Query 1197 TTTACGATTCAGTCCCAGATCCTGTTTTCTGGCCTGTCTTTGTCATTGCCACACTTGCAG 1256
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 TTTACGATTCAGTCCCAGACCCTGTTTTCTGGCCTGTCTTTGTCATTGCCACACTTGCAG 1242
Query 1257 CCATTGTTGGCAGTCAGGCTGTGATAACCACTACGTTCTCAATAATCAAACAATGCCATG 1316
||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 1243 CCATTGTTGGCAGTCAGGCTGTGATAACCGCTACGTTCTCAATAGTCAAGCAATGCCATG 1302
Query 1317 CCCTAGGGTGCTTCCCACGCATCAAAGTAGTCCATACTTCGAAACATATATATGGACAGA 1376
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1303 CCCTTGGGTGCTTCCCACGCATCAAAGTAGTCCATACTTGGAAACATATATATGGACAGA 1362
Query 1377 TCTATATCCCGGAGATCAACTGGATCCTGATGATCCTTACTCTTGCAATGGCTATAGGCT 1436
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1363 TCTATATCCCGGAGATCAACTGGATCCTGATGATCCTTACTCTTGCAATAACTATAGGCT 1422
Query 1437 TTCGAGACACAACTTTGATTGGAAATGCCTACGGAATCGCATGCATGGTAGTAATGTTCA 1496
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1423 TTCGAGACACAACTTTGATTGGAAATGCCTACGGAATCGCATGCATGATGGTAATGTTCA 1482
Query 1497 TCACAACGTTTTTCATGGCTCTTGTCATAGTCGTGGTTTGGCAAAAGAGTTGTTTTCTGG 1556
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1483 TCACAACGTTTTTCATGTCTCTTGTCATAGTCGTGGTTTGGCAGAAGAGTTGTTTTCTGG 1542
Query 1557 CGGCTTTGTTTCTTGGAACTCTATGGATAATTGAAGGTGTCTACCTCTCAGCAGCGCTAA 1616
|||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1543 CGGCGTTGTTTCTTGGGACTCTATGGATAATTGAAGGTGTGTACCTCTCAGCAGCGCTCA 1602
Query 1617 TGAAAGTTACCGAGGGAGGTTGGGTGCCTTTTGTGCTCACGTTCATATTTATGATCGCCA 1676
|||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 TGAAAGTTCCCCAGGGTGGTTGGGTGCCTTTTGTGCTCACGTTCATATTTATGATCGCCA 1662
Query 1677 TGTATGTGTGGCACTATGGCACCCGTAGGAAATACAGCTTTGATCTTCATAACAAAGTTT 1736
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1663 TGTATGTGTGGCACTATGGCACCCGCAGGAAATACAGCTTTGATCTTCATAACAAAGTTT 1722
Query 1737 CATTGAAGTGGTTGCTGGGATTAGGACCTAGTCTAGGTATTGTCCGCGTTCCTGGAATAG 1796
||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1723 CATTGAAGTGGTTACTGGGATTAGGACCTAGTCTTGGTATTGTCCGCGTGCCTGGAATAG 1782
Query 1797 GACTCGTTTACTCAGAACTTGCAACTGGAGTTCCTGCAATTTTCTCTCACTTTGTGACCA 1856
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1783 GACTCGTATACTCAGAACTTGCAACTGGAGTTCCTGCAATTTTCTCGCACTTTGTCACCA 1842
Query 1857 ACCTGCCTGCATTCCATAAAGTCGTGGTGTTTGTTTGTGTGAAATCAGTTCCAGTGCCTC 1916
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 ACCTCCCGGCATTCCATAAAGTCGTGGTGTTTGTTTGTGTGAAATCAGTTCCAGTGCCTC 1902
Query 1917 ATGTTTCCCCTGAGGAACGCTTCCTCATTGGTCGAGTTTGCCCGAAGCCTTATCGTATGT 1976
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1903 ATGTTTCCCCTGAGGAACGCTTCCTCATTGGTCGTGTTTGCCCGAAGCCTTATCGTATGT 1962
Query 1977 ACAGGTGCATAGTGAGGTACGGTTACAAGGACATTCAACGGGAAGACGGGGACTTTGAGA 2036
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1963 ACAGGTGCATAGTGAGGTACGGGTACAAGGACATTCAACGGGAAGACGGGGACTTTGAGA 2022
Query 2037 ATCAGCTTGTACAGAGCATAGCGGAGTTCATCCAGATGGAAGCAAGCGACCTCCAATCCT 2096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2023 ATCAGCTTGTACAGAGCATAGCGGAGTTCATCCAGATGGAAGCAAGCGACCTCCAATCCT 2082
Query 2097 CGGCTTCTGAGTCTCAATCTAATGATGGGAGAATGGCCGTTCTAAGCAGCCAGAAGAGTC 2156
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2083 CGGCTTCTGAGTCTCAATCTTATGATGGGAGAATGGCCGTTTTAAGCAGCCAGAAGAGTG 2142
Query 2157 TCTCTAACTCAATCCTGACGGTTTCAGAGGTAGAGGAGATTGATTATGCTGACCCCACGA 2216
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2143 GCTCTAACTCAATCCTGACGGTTTCAGAGGTAGAGGAGATTGATTTTGCTGACCCCACGA 2202
Query 2217 TACAAAGCAGTAAATCCATGACTCTGCAGAGTTTGCGTTCAGTGTACGAGGATGAGTATC 2276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2203 TACAAAGCAGTAAATCCATGACTCTGCAGAGTTTGCGTTCAGTGTACGAGGATGAGTATC 2262
Query 2277 CGCAAGGGCAAGTGAGGAGGAGGCATGTGAGGTTCCAGTTAACGGCGTCAAGTGGTGGGA 2336
||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct 2263 TGCAAGGGCAAGTGAGGAGGCGGCATGTGAGGTTCCAGTTAACGCCGTCAAGTGCTGGGA 2322
Query 2337 TGGGGTCCTCAGTGAGGGAAGAGCTAATGGATCTGATACGGGCGAAAGAGGCGGGTGTTG 2396
||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2323 TGGAGTCCTCTGTGAGGGAAGAACTAATGGATCTGATACGGGCGAAAGAGGCGGGTGTTG 2382
Query 2397 CATATATAATGGGCCACTCGTATGTGAAATCGAGGAAATCCTCGTCTTGGTTGAAGAAGA 2456
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 2383 CATATATAATGGGCCACTCATATGTGAAATCGAGGAAATCCTCGTCCTGGTTGAAGAAGA 2442
Query 2457 TGGCGATAGACATCGGTTATTCTTTCTTGAGGAAGAACTGCAGAGGGCCAGCCGTAGCAC 2516
|| |||| || ||||| ||||||||| ||||||||||||||||||||||||| || ||||
Sbjct 2443 TGACGATTGATATCGGCTATTCTTTCCTGAGGAAGAACTGCAGAGGGCCAGCTGTCGCAC 2502
Query 2517 TCAACATTCCTCACATCAGCCTCATTGAAGTTGGCATGATTTACTATGTTTAAGCCACTA 2576
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 2503 TCAACATTCCTCACATCAGCCTCATTGAAGTTGGCATGATATACTATGTTTAAGCCAATA 2562
Query 2577 ATA--T-G-A-GTA-G-CATTCATAATTCATGGGGGGAATAATGGGAACAATCTATTCA 2628
| | | | | || | ||||| |||||||| || ||||||||||||||||||| ||||
Sbjct 2563 AGAACTCGTATGTGTGGCATTCGTAATTCATAGGAGGAATAATGGGAACAATCTGTTCA 2621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104862444485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5