BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02065.2
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477303 jgi|Araly1|477303|fgenesh2_kg.3__4__AT3G02065.2 2678 0.0
> Ahg477303 jgi|Araly1|477303|fgenesh2_kg.3__4__AT3G02065.2
Length=1728
Score = 2678 bits (1450), Expect = 0.0
Identities = 1635/1721 (95%), Gaps = 26/1721 (2%)
Strand=Plus/Plus
Query 23 CTTGCGATTAACCAATCCACCTTTCGATCGGAAAATCCTTCTGTTTGCGAATCTA----- 77
||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 CTTACGATTGATCAATCCACCTTTCGATCGAAAAATCCTTCTGTTTGCGAATCTATTTTT 60
Query 78 --TT-GGGGGAACTCTGGTTCCATGTGTTAGGTATTTTCC-TT--TCGTCGA------CC 125
|| ||||| |||||||||||||||||||||||||||| || ||||||| |
Sbjct 61 CTTTCAGGGGAGCTCTGGTTCCATGTGTTAGGTATTTTCCTTTCGTCGTCGATGTTTTGC 120
Query 126 TGATTCATCTTGTGCATGTCGATTCTGAATAATGAACGAAGAAGGCTGCGTCCCGCACAA 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGATTCATCTTGTGCATGTCGATTCTGAATAATGAACGAAGAAGGCTGCGTCCCGCACAA 180
Query 186 CTCTGATGTTGTTAAACAAAAGTCTATAGATCAAAGAGCCCCTCTTTCCGGGGAACCTAA 245
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 181 CTCTGATGTTGTCAAACAAAAGTCTATAGATCAAAGAGCCCCTCTTCCCGGGGAGCCTAA 240
Query 246 ATGTGTTATCTGCAGTCGTTATGGTGAGTACATATGTGACGAGACCAATGATGACGTCTG 305
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 ATGTGTTATCTGCAGTCGTTATGGTGAGTACATTTGTGACGAGACCAATGATGACGTCTG 300
Query 306 CAGCCTCGAGTGTAAGCAAGCACTCCTGAGAAGGGTTGACAGCGCTAGAGTTTTTCCTGC 365
||||||||||||||||||| ||||||||||||||||||| | ||||| ||| ||||||||
Sbjct 301 CAGCCTCGAGTGTAAGCAAACACTCCTGAGAAGGGTTGATAACGCTACAGTGTTTCCTGC 360
Query 366 CACAGATGAGTGCTTCTATGTTAGAGACCCAGGATCTTC-TTCCCACGATGCTCAACTAC 424
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 361 CACAGATGAGTGCTTCTATGTTAGAGACCCAGGATCTTCTTTCCC-CGATGCTCAACTAC 419
Query 425 TTAGAAGAAAGCTTGATATTCATGTCCAAGGACAAGGATCAGCAGTCCCTCCACCTGTCT 484
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 420 TTAGAAGAAAGCTTGATATTCATGTCCAAGGACAAGAAGCAGCAGTCCCTCCACCTGTCT 479
Query 485 TGACTTTCACTTCATGTGGACTTCCTCCTAAGCTTCTTCTCAACTTAGAAACGGCTGGCT 544
| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 480 TAACTTTCACTTCATGTGGGCTTCCTCCTAAGCTTCTTGTCAACTTAGAAACGGCTGGCT 539
Query 545 ATGACTTTCCTACTCCTATCCAGATGCAAGCAATTCCAGCTGCTTTAACCGGCAAAAGTC 604
|||||||||| |||||||||||||||||||| || ||||||||||||| |||||| ||||
Sbjct 540 ATGACTTTCCCACTCCTATCCAGATGCAAGCGATCCCAGCTGCTTTAAGCGGCAATAGTC 599
Query 605 TGCTCGCCTCAGCCGACACCGGCTCTGGGAAAACAGCTTCTTTTCTTGTTCCTATTATTT 664
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 TGCTCGCTTCAGCCGACACCGGCTCCGGGAAAACAGCTTCTTTTCTTGTTCCTATTATTT 659
Query 665 CTCGTTGCACAACGTATCACTCTGAGCATCCCTCAGACCAGAGGAGGAACCCCTTGGCTA 724
||||||| |||||||||| |||||||||||||||||||| | |||||||||||||||||
Sbjct 660 CTCGTTGTACAACGTATCGCTCTGAGCATCCCTCAGACC--A-GAGGAACCCCTTGGCTA 716
Query 725 TGGTTTTGGCTCCAACGAGAGAGCTCTGTGTCCAAGTTGAAGATCAGGCAAAAATGCTCG 784
|||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 717 TGGTTTTGGCTCCAACTAGAGAGCTCTGTGTCCAAATTGAAAATCAGGCAAAAATGCTCG 776
Query 785 GAAAGGGACTGCCATTTAAGACTGCACTCGTTGTAGGTGGTGATCCCATGTCTGGACAAC 844
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 777 GAAAGGGACTGCCATTTAAGACCGCACTTGTTGTAGGTGGTGATCCCATGTCTGGACAAC 836
Query 845 TCTACCGCATTCAGCAAGGTGTTGAATTGATCATTGGTACCCCAGGCCGGGTGGTGGACC 904
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 837 TCTACCGCATTCAGCAAGGTGTTGAATTGATCATTGGTACCCCAGGCCGGGTTGTGGACC 896
Query 905 TTCTA-TCAAAGCACACCATTGAACTAGATAACATCATGACGTTTGTGCTGGATGAAGTT 963
||||| | ||||||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 897 TTCTAGT-AAAGCACGCCATTGAACTGGATAACATCATGACGTTTGTGCTGGATGAGGTT 955
Query 964 GACTGCATGCTTCAGAGAGGCTTCAGAGATCAGGTGATGCAGATATTTCAGGCCTTGTCA 1023
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 956 GACTGCATGCTTCAGAGAGGCTTCAGGGATCTGGTGATGCAGATATTTCAGGCCTTGTCA 1015
Query 1024 CAACCACAGGTCTTGCTGTTCTCTGCGACGA-TCTCAAGAGAGGTGGAGAAGGTGGGAGG 1082
||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||
Sbjct 1016 CAACCACAGGTCTTGCTGTTCTCTGCGAC-AGTCTCAAGAGAGGTGGAAAAGGTGGGAGG 1074
Query 1083 GTCTCTAGCCAAGGAAATCATTTTGGTATCCATAGGTAATCCCAACAAGCCTAACAAGGC 1142
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1075 GTCTCTAGCCAAGGAAATCATTTTGGTATCCATAGGTAATCCCAACAAACCTAACAAGGC 1134
Query 1143 TGTCAACCAATTGGCCATCTGGGTAGATGCAAAGCAAAAGAAACAGAAGCTGTTTGATAT 1202
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1135 TGTCAACCAATTGGCTATCTGGGTTGATGCAAAGCAAAAGAAACAGAAGCTGTTTGATAT 1194
Query 1203 ACTCAGAAGTCAAAACCATTTCAAGCCCCCCGCTGTTGTTTATGTGAGTTCGAGAGTTGG 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 ACTCAGAAGTCAAAACCATTTCAAGCCCCCCGCTGTTGTTTATGTGAGTTCGAGAGTTGG 1254
Query 1263 AGCAGATCTCCTGGCTAATGCCATAACTGTTGTCACGGGGGTAAAAGCTCTATCGATCCA 1322
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1255 AGCAGATCTCCTGGCTAATGCTATAACTGTTGTCACAGGGGTAAAAGCTCTCTCGATCCA 1314
Query 1323 TGGGGAGAAGCCAATGAAGGAGAGGAGAGACGTAATGGGATCGTTTTTGGGTGGAGAGGT 1382
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1315 TGGGGAGAAGCCAATGAAGGAGAGGAGAGATGTAATGGGATCGTTTTTGGGTGGAGATGT 1374
Query 1383 GCCAGTTCTTGTATCAACGGGAGTTCTAGGCCGAGGAGTTGACCTATTGGTGGTAAGGCA 1442
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1375 GCCTGTTCTTGTATCAACAGGAGTTCTAGGCCGAGGAGTTGACCTCTTGGTGGTAAGGCA 1434
Query 1443 GGTGATAGTGTTTGACATGCCTAGTACCATCAAGGAGTACATACATGTAATTGGCAGGGC 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GGTGATAGTGTTTGACATGCCTAGTACCATCAAGGAGTACATACATGTAATTGGCAGGGC 1494
Query 1503 CTCTAGGATGGGAGAGAAGGGCACTGCCATTGTGTTTGTGAATGAGGACGACAGGAACCT 1562
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1495 CTCTAGGATGGGAGAGAAGGGCACTGCCATTTTGTTTGTGAATGAGGACGACAGGAACCT 1554
Query 1563 ATTCCCTGATTTAGTTGCCGCTTTAAAAAGTAGTGGAGCAGCCATACCTAAGGAACTTAT 1622
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1555 ATTCCCTGATTTGGTTGCCGCTTTAAAAAGTAGTGGTGCAGCCATACCTAAGGAACTTAT 1614
Query 1623 CAATTTGACATCCAGGGAAATGCACAACAAGAAGAGAAGGGTTGGGTACTGAGATGTATG 1682
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1615 CAATTTGACATCCAGGGAAATGCACAACAAGAAGAGAAGGGTTGGGTACTGAAATGTATG 1674
Query 1683 ACCTGGATCCGAATGTTGTTGTAAATTAAGAAAGAAAGGAA 1723
|||||||||| |||||| |||||||||||| ||||||||||
Sbjct 1675 ACCTGGATCCAAATGTTTTTGTAAATTAAGGAAGAAAGGAA 1715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68676711735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5