BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G02070.1

Length=1142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg902874 jgi|Araly1|902874|Al_scaffold_0003_2                      1075    0.0  


> Ahg902874 jgi|Araly1|902874|Al_scaffold_0003_2
Length=660

 Score = 1075 bits (582),  Expect = 0.0
 Identities = 635/661 (96%), Gaps = 2/661 (0%)
 Strand=Plus/Plus

Query  186  ATGGGAGACTCTTCGAGTTCAACCTCTTGGAGCAGTAAAAAGGATACGGAAGATGATCGG  245
            ||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct  1    ATGGGAGACTCTTCGAGTTCAACCTCTAGGAGCAGTAAAAATGATACCGAAGATGATCGG  60

Query  246  ATGATTGCTTTTATGTTATCTGAAGAGTACTCTAAACTAGACGGTGCGGTCGGCAGACGC  305
            ||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct  61   ATGATTGCTCTTATGTTATCTGAAGAGTACTCAAAACTAGATGGTGCAGTCGGCAGACGC  120

Query  306  CTCTCAAATCTTGCTCCCGTCCCTCATGTTCCACGAATAAATTGTTATATTCCCAACTTA  365
            ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct  121  CTCTCAAATCTTGCTCCTGTCCCTCATGTTCCCCGAATAAATTGTTATATTCCCAACTTA  180

Query  366  AATGATGCCACCTTGGATCACCAACGCCTTCTTCAAAGGTTAAATGTTTACGGTTTGTGT  425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AATGATGCCACCTTGGATCACCAACGCCTTCTTCAAAGGTTAAATGTTTACGGTTTGTGT  240

Query  426  GAGTTGAAGGTCTCTGGTGATGGAAACTGCCAGTTCCGAGCCCTTTCTGACCAGTTATAC  485
            |||||||| |||||||||||||||||||||||||| |||||  |||||||||||||||||
Sbjct  241  GAGTTGAAAGTCTCTGGTGATGGAAACTGCCAGTTTCGAGCAGTTTCTGACCAGTTATAC  300

Query  486  CGATCTCCAGAGTACCACAAGCAAGTGAGGAGAGAAGTTGTTAAACAGCTCAAAGAGTGT  545
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct  301  CGATCTCCAGAGTACCACAAGCAAGTTAGGAGAGAAGTTGTTAAACAGCTCAAAGACTGT  360

Query  546  CGTTCTATGTATGAAAGTTATGTTCCGATGAAATACAAACGATATTACAAGAAGATGGGA  605
            || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  361  CGCTCTATGTATGAAAGTTATGTTCCGATGAAATACAAACGATATTACAAGAGGATGGGA  420

Query  606  AAATTTGGAGAATGGGGAGACCATATTACCCTACAAGCTGCGGCAGATAGGTTTGCAGCA  665
            ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  421  AAACTTGGAGAATGGGGAGACCATATTACCTTACAAGCTGCGGCAGATAGGTTTGCAGCA  480

Query  666  AAGATATGCTTGCTGACATCCTTTAGAGACACTTGTTTCATTGAAATTATACCTCAATAC  725
            ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  AAGATATGCCTACTGACATCCTTTAGAGACACTTGTTTCATTGAAATTATACCTCAATAC  540

Query  726  CAAGCACCTAAGGGTGTGTTATGGTTAAGTTTCTGGTCAGAGGTGCATTATAACTCTTTA  785
            |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  CAAGCACCTAAGCGTGAGTTATGGTTAAGTTTCTGGTCAGAGGTGCATTATAACTCTTTA  600

Query  786  TACGATATTCAAGCTGCTCCAGTTCAGCATAAG-CCAAAGAGAAAACATTGGTTGTTCTA  844
            || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct  601  TATGATATTCAAGCTGCTCCAGTTCAGCATAAGGCCAA-GAGAAAACATTGGTTGTTCTA  659

Query  845  G  845
            |
Sbjct  660  G  660



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42583298289


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5