BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02080.1
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477436 jgi|Araly1|477436|fgenesh2_kg.3__137__AT3G02080.1 1083 0.0
> Ahg477436 jgi|Araly1|477436|fgenesh2_kg.3__137__AT3G02080.1
Length=754
Score = 1083 bits (586), Expect = 0.0
Identities = 721/781 (92%), Gaps = 29/781 (4%)
Strand=Plus/Plus
Query 25 AAAAACCCTAGTCTTTGCGGAGAGAGATTCAGCTGCGTTGGGCAAAATCCCAGACGAAGA 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAACCCTAGTCTTTGCGGAGAGAGATTCAGCTGCGTTGGGCAAAATCCCAGACGAAGA 60
Query 85 TCAGTGATTAGTCTTTTGATAACTTGAGCCATGGCAACTGGTAAAACTGTGAAAGACGTC 144
|||||||||||| |||||| |||||||||||| | |||||||||||||||||||||
Sbjct 61 AGAGTGATTAGTCTATTGATATTTTGAGCCATGGC-A--GGTAAAACTGTGAAAGACGTC 117
Query 145 TCGCCTCATGACTTCGTCAAGGCTTATGCTTCTCATCTCAAGCGATCTGGCAAGATCGAG 204
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCTCCTCATGACTTCGTCAAGGCTTATGCTTCTCATCTCAAGCGATCTGGCAAGATCGAG 177
Query 205 CTTCCCACATGGACAGACATTGTGAAGACCGGAAAGTTGAAGGAGCTTGCACCATATGAT 264
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CTTCCCACATGGACAGACATTGTGAAGACCGGAAAGTTGAAGGAGCTTGCACCATATGAC 237
Query 265 CCTGATTGGTACTACATCAGAGCTGCATCTATGGCAAGGAAGGTTTACCTGAGGGGAGGA 324
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 238 CCTGATTGGTACTACATCAGAGCTGCATCTATGGCTAGGAAGGTTTACCTTAGGGGAGGA 297
Query 325 CTTGGTGTTGGTGCTTTCCGTAGAATCTATGGTGGAAGCAAGAGGAACGGTAGTCGCCCA 384
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 298 CTTGGTGTTGGTGCTTTCCGTAGAATCTATGGTGGCAGCAAGAGGAACGGTAGTCGCCCA 357
Query 385 CCTCACTTTTGCAAAAGCAGTGGTGGTATTGCCCGTCACATCCTCCAACAGCTGGAGACA 444
|||||||||||||||||||| || || |||||||||||||||||||| ||| ||||||||
Sbjct 358 CCTCACTTTTGCAAAAGCAGCGGAGGCATTGCCCGTCACATCCTCCAGCAGTTGGAGACA 417
Query 445 ATGAACATTGTTGAGCTCGACACCAAAGGAGGAAGAAGGATCACTTCCAGTGGCCAAAGG 504
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 418 ATGAACATTGTTGAGCTCGACACCAAAGGAGGAAGAAGAATCACTTCCAGTGGCCAACGG 477
Query 505 GATTTGGACCAGGTTGCTGGCCGTATTGCAGTTGAACCTTGAAGATCTTAATGTTCTTTT 564
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 478 GATTTGGACCAGGTTGCTGGCCGTATTGCAGTTGAACCTTGAAGACCTGAATGTTCTTTT 537
Query 565 TTGTTCTTCTTCTACTTTTGAGGCCATTGTGCTTTTAGTGTTTATCTTTACTTTTAAGAA 624
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TT-TG-TTCTTCTACTTTTGAGGCCATTGTGCTTTTAGTGTTTATCTTTACTTTTAAGAA 595
Query 625 TTGTTACCATTTCATTCTCAAGACTTGCGCTCATAATGTTCAAAAATTT--ATCTTTTTG 682
|||||||||||||| |||||||||||| ||||||||||||| |||||| |||||||||
Sbjct 596 ATGTTACCATTTCATGCTCAAGACTTGCACTCATAATGTTCAGAAATTTTTATCTTTTTG 655
Query 683 GCGATGGCTTTGGACATTGAAACTTATGTCTTCAACCGTATTTTTGTGTTCGTCCGATTT 742
| |||||||||| ||||| |||||||| | || | | |||||| ||| ||||
Sbjct 656 GTGATGGCTTTGAACATTTAAACTTAT-T-TT------T-T----GTGTTCCTCCAATTT 702
Query 743 AAGGATAATAGGATATGGTTTCTTCATCCCTAAATTGCTAATTTCATCCTTCTTTAGTGC 802
||||||| | || | | | ||||| |||||||||||||||||||||||||| || |||
Sbjct 703 AAGGATA-T-GG-T-T--T--CTTCA-CCCTAAATTGCTAATTTCATCCTTCTGTATTGC 753
Query 803 C 803
|
Sbjct 754 C 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29659629426
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5