BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02090.2
Length=2060
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927681 jgi|Araly1|927681|scaffold_300138.1 3109 0.0
Ahg903001 jgi|Araly1|903001|Al_scaffold_0003_129 122 7e-27
> Ahg927681 jgi|Araly1|927681|scaffold_300138.1
Length=1865
Score = 3109 bits (1683), Expect = 0.0
Identities = 1805/1865 (97%), Gaps = 4/1865 (0%)
Strand=Plus/Plus
Query 10 GCCATTTTTGGCTTTTTAATCAAACCCTAGAGAGATTGAGAGAGCGAAGAGAAGCCATCA 69
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 GCCATTTTTGGCTTTTTAATCAAACCCTAGAGAGATTGAGAGACCGAAGAGAAGCCATCA 60
Query 70 TCAGCCATGGCGATGAAGAATCTACTGTCCCTAGCTCGCCGATCTCAGAGGCGTTTATTC 129
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 61 TCAGCAATGGCGATGAAGAATCTACTGTCCCTAGCACGCCGATCTCAGAGGCGTTTGTTT 120
Query 130 CTCACTCAAGCCACACGATCTTCCTCTTCGTTTTCAGCTATCGATTCGGTGCCGGCTTCC 189
|||| |||||||||||||||||||||||| || |||||||||||| ||| ||||||||||
Sbjct 121 CTCAGTCAAGCCACACGATCTTCCTCTTCCTTCTCAGCTATCGATACGGCGCCGGCTTCC 180
Query 190 GCATCTCCGACGGCTCTATCTCCACCGCCGCCGCATCTTATGCCATACGACCACGCGGCT 249
|||||||| || ||| ||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 181 ACATCTCCGGCGACTCCATCTCCACCGCCGCCGCATCTTATGCCGTACGATCACGCGGCT 240
Query 250 GAGATTATAAAAAATAAGATCAAGAAGCTCGAGAATCCTGATAAGAGGTTCCTTAAATAC 309
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 GAGATTATGAAAAATAAGATCAAGAAGCTCGAGAATCCGGATAAGAGGTTCCTTAAATAC 300
Query 310 GCATCTCCACATCCGATCCTCGCTTCCCACAATCACATCTTGTCAGCTCCGGAGACTCGT 369
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCATCTCCACATCCGATCCTTGCTTCCCACAATCACATCTTGTCAGCTCCGGAGACTCGT 360
Query 370 GTCACTACCTTGCCCAATGGTCTACGAGTCGCTACTGAGTCAAATCTCTCGGCTAAGACC 429
|| || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GTAACAACCTTACCCAATGGTCTACGAGTCGCTACTGAGTCCAATCTCTCGGCTAAGACC 420
Query 430 GCCACCGTTGGAGTCTGGATCGACGCTGGATCTCGGTTTGAGTCCGATGAGACCAACGGA 489
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 421 GCCACCGTTGGAGTCTGGATCGACGCTGGATCTCGGTTCGAGTCGGATGAGACCAACGGA 480
Query 490 ACGGCTCATTTTTTGGAGCATATGATATTCAAAGGCACGGATAGGCGTACAGTGAGAGCG 549
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 ACGGCTCATTTTCTGGAGCATATGATATTCAAAGGCACGGATAAGCGTACAGTGAGAGCG 540
Query 550 TTGGAGGAAGAGATCGAAGATATTGGTGGTCACCTGAACGCGTATACATCGAGGGAACAG 609
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 TTGGAGGAAGAGATCGAAGATATTGGGGGTCACCTGAACGCGTATACATCGAGGGAACAG 600
Query 610 ACCACTTATTATGCTAAGGTTTTGGATTCCAATGTGAACCAGGCTTTGGATGTCTTGGCT 669
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 ACCACTTATTATGCTAAGGTTTTGGATTCGAATGTGAACCAGGCTTTGGATGTCTTGGCT 660
Query 670 GATATCCTACAGAATTCTAAGTTCGAGGAACAGAGAATTAACCGCGAACGAGATGTCATC 729
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GATATCTTACAGAATTCCAAGTTCGAGGAACAGAGAATTAACCGCGAACGAGATGTCATC 720
Query 730 CTCAGGGAAATGCAAGAGGTGGAGGGACAAACCGATGAAGTGGTTCTTGACCATTTACAT 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTCAGGGAAATGCAAGAGGTGGAGGGACAAACCGATGAAGTGGTTCTTGACCATTTACAT 780
Query 790 GCCACTGCATTCCAATACACACCCCTTGGAAGAACTATTTTGGGACCTGCTCAGAACGTC 849
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 781 GCCACTGCATTCCAATACACACCCCTTGGAAGAACTATTCTGGGACCTGCTCAGAACGTC 840
Query 850 AAATCGATCACCAGAGAGGATCTACAGAACTACATTAAGACTCACTACACTGCTTCCAGG 909
|| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 841 AAGTCGATCACCAGAGAGGATCTACAGAATTACATTAAGACTCACTACACAGCTTCCAGG 900
Query 910 ATGGTGATTGCTGCTGCAGGAGCTGTTAAGCATGAGGAAGTTGTTGAGCAAGTGAAGAAG 969
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 901 ATGGTGATTGCTGCTGCAGGAGCTGTCAAGCATGAGGAAGTTGTTGAGCAAGTGAAGAAG 960
Query 970 CTATTTACCAAGTTGTCGTCTGATCCAACAACTACTTCTCAACTGGTTGCCAATGAACCT 1029
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTATTTACCAAGTTGTCATCTGATCCAACAACTACTTCTCAACTGGTTGCCAATGAACCA 1020
Query 1030 GCTAGTTTTACTGGTTCTGAGGTCCGAATGATTGATGACGACCTACCCCTTGCACAATTT 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GCTAGTTTTACTGGTTCTGAGGTCCGAATGATTGATGACGACCTACCCCTTGCACAATTT 1080
Query 1090 GCTGTTGCCTTTGAGGGAGCATCTTGGACTGATCCAGATTCCGTTGCTCTTATGGTTATG 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCTGTTGCCTTTGAGGGAGCATCTTGGACTGATCCAGATTCCGTTGCTCTTATGGTTATG 1140
Query 1150 CAAACTATGTTGGGTTCGTGGAACAAAAATGTTGGTGGTGGAAAACACGTGGGTTCTGAC 1209
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1141 CAAACTATGTTGGGTTCGTGGAACAAAAATGTTGGTGGGGGAAAACACGTGGGTTCTGAC 1200
Query 1210 CTGACCCAGAGGGTTGCCATTAATGAAATAGCAGAAAGCATAATGGCATTCAACACTAAC 1269
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1201 CTGATCCAGAGGGTTGCCATTAATGAAATAGCAGAAAGCATAATGGCATTCAACACCAAC 1260
Query 1270 TACAAGGATACTGGACTGTTCGGCGTTTATGCAGTTGCCAAGGCCGATTGCTTGGATGAT 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TACAAGGATACTGGACTGTTCGGCGTTTATGCAGTTGCCAAGGCCGATTGCTTGGATGAT 1320
Query 1330 TTATCATATGCCATTATGTATGAGGTAACCAAGCTGGCCTACCGAGTTTCAGACGCTGAT 1389
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TTGTCATATGCCATTATGAATGAGGTAACCAAGCTGGCCTACCGAGTTTCAGACGCTGAT 1380
Query 1390 GTGACACGTGCACGAAATCAGCTGAAATCATCATTGTTACTTCACATGGATGGAACCAGC 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GTGACACGTGCACGAAATCAGCTGAAATCATCATTGTTACTTCACATGGATGGAACCAGC 1440
Query 1450 CCAATTGCTGAAGATATTGGTCGTCAGCTGCTGACCTATGGGCGTAGAATCCCAACCGCT 1509
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1441 CCAATTGCTGAAGATATTGGTCGTCAGCTGCTGACCTATGGGCGTAGAATCCCAACTGCT 1500
Query 1510 GAACTCTTTGCTAGGATCGATGCTGTTGATGCCAGCACGGTAAAACGTGTTGCCAACAAA 1569
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1501 GAACTCTTTGCTAGGATAGATGCTGTTGATGCCAGCACGGTTAAACGTGTTGCTAACAAA 1560
Query 1570 TATATCTATGACAAAGTAAGACATTGCAATCTCAGCTATTGGTCCAATCCAAGATTTGCC 1629
|||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1561 TATATCTATGACAA-G---GACATTGCAATCTCAGCCATTGGTCCAATCCAAGATTTGCC 1616
Query 1630 AGACTACAACAAATTCAGACGCAGAACCTACTGGAACCGGTACTAAGGCTCTGAAATAAA 1689
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 AGACTACAACAAGTTCAGACGCAGAACCTACTGGAACCGGTACTAAGGCTCTGAAATAAC 1676
Query 1690 GGTCACTGAATCGCAAGGTTCGCCCACGGGGAGATTCCGTAGGCGGAGAGAGCAGAACGA 1749
|||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1677 GGTCACAGAACCGCAAGGTTTGCCCACGGGGAGATTCCGTAGGCGGAGAGAGCAGAACAA 1736
Query 1750 GGTGATGATGGATTCATTATTTTTGAGTTTTTCTTACTGTATCTTCATAATTTACCATCA 1809
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1737 GGTGATGATGGATTCATTATTTTTGAGTTTTTCTTACTGTATCTCCATAATTTACCATCA 1796
Query 1810 TCGCTGGTAAAATAAGTGTACCATTTACTCTTTGTCCTCTACTGGAAAAATGCTAGAGAT 1869
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1797 TCGCTGGTAAAATAAGTGTACCATTTACTCTTTATCCTCTACTGGAAAAATGCTAGAGAT 1856
Query 1870 CCTCT 1874
|||||
Sbjct 1857 CCTCT 1861
> Ahg903001 jgi|Araly1|903001|Al_scaffold_0003_129
Length=1392
Score = 122 bits (66), Expect = 7e-27
Identities = 70/72 (97%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 1989 TCAATTCACTTGTGATTTGATCCAGTTGACAAATTTATTAAGATTCTCACAAGATATTCC 2048
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1392 TCAATACACTTGTGATTTGATCCAGTTGACAAATTTATTAAGATTCTCACAAGAAATTCC 1333
Query 2049 ATCTTTTGCAAC 2060
||||||||||||
Sbjct 1332 ATCTTTTGCAAC 1321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77475558330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5