BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G02100.1 Length=1395 Score E Sequences producing significant alignments: (Bits) Value Ahg903001 jgi|Araly1|903001|Al_scaffold_0003_129 2119 0.0 > Ahg903001 jgi|Araly1|903001|Al_scaffold_0003_129 Length=1392 Score = 2119 bits (1147), Expect = 0.0 Identities = 1315/1397 (94%), Gaps = 7/1397 (1%) Strand=Plus/Plus Query 1 ATGGATAATAACTCAAATAAAAGAATGGGAAGGCCACATGTTGTGGTCATACCTTACCCT 60 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATAATAACTTAAATAAAAGAATGGGAAGGCCACATGTTGTGGTCATACCTTACCCA 60 Query 61 GCACAAGGTCATGTTCTTCCTCTAATAAGTTTCTCACGTTACCTTGCGAAACAAGGAATC 120 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 GCACAAGGTCATGTTCTTCCTCTAATGAGTTTCTCACGTTACCTTGCGAAACAAGGAATC 120 Query 121 CAAATTACATTCATAAACACCGAGTTTAACCATAACCGCATCATCAGTTCCTTACCCAAT 180 ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 121 CAAATTACATTCATAAACACCGAGTTTAACCATAATCGCATCATCAATTCCTTACCCAAT 180 Query 181 TCACCTCATGAAGATTATGTTGGGGATCAGATCAATCTTGTTTCAATCCCTGACGGTTTA 240 ||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 181 TCATCTCATGAAGATTATGTTGGGGATGGGATCAATCTTGTTTCAATCCCCGACGGTTTA 240 Query 241 GAAGATTCACCAGAAGAGAGGAACATTCCAGGGAAGTTGTCGGAGTCTGTTTTGCGTTTT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GAAGATTCACCAGAAGAGAGGAACATTCCAGGGAAGTTGTCGGAGTCTGTTTTGCGTTTT 300 Query 301 ATGCCTAAAAAAGTAGAGGAATTGATCGAGAGGATGA-TGGCAGAAACTAGCGGTGGTAC 359 ||||||||||||||||||||||||||| | ||| | | || | | ||| | ||||| Sbjct 301 ATGCCTAAAAAAGTAGAGGAATTGATC--GCGGA-AACTAGCGGTGGC-AGCTGCGGTAC 356 Query 360 GATCATTAGCTGCGTTGTAGCGGATCAGAGCTTGGGATGGGCAATTGAAGTTGCAGCTAA 419 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 357 AATCATTAGCTGCGTTGTAGCGGATCAGAGCTTGGGATGGGCAATCGAAGTTGCAGCTAA 416 Query 420 GTTTGGGATCAGACGCACCGCGTTTTGTCCTGCTGCAGCTGCGTCTATGGTTCTTGGATT 479 |||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| Sbjct 417 GTTTGGGATCAGACGCGCCGCGTTTTGTCCTGCCGCGGCTGCGTCTATGGTTCTTGGATT 476 Query 480 TAGTATTCAAAAACTTATCGATGATGGTCTCATAGATTCTGATGGGACTGTGAGAGTAAA 539 |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| Sbjct 477 TAGTATTCAAAAACTTATTGATGATGGTCTCATAGATTTTGATGGGACTGTGAGGGTAAA 536 Query 540 TAAGACAATTCAACTATCTCCCGGGATGCCAAAGATGGAAACAGACAAGTTTGTGTGGGT 599 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 TAAGACAATTCAGTTATCTCCCGGGATGCCAAAGATGGAAACAGACAAGTTTGTGTGGGT 596 Query 600 TTGTCTGAAGAACAAAGAATCTCAGAAAAACATATTCCAACTTATGCTTCAAAACAATAA 659 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 597 TTGTCTGAAGAACAAAGAATCTCAGAAGAACATATTCCAACTTATGCTTCAAAACAATAA 656 Query 660 CTCGATCGAGTCAACGGATTGGTTGTTGTGTAACTCTGTCCATGAACTTGAAACTGCAGC 719 ||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| Sbjct 657 CTCAATCGAGTCAACGGATTGGTTGTTGTGTAACTCTGTCTATGAACTCGAAACGGCAGC 716 Query 720 ATTTGGATTGGGCCCGAATATAGTACCAATTGGGCCCATTGGTTGGGCTCATAGTCTTGA 779 |||| |||| |||| ||| ||| |||| ||||||||||||||||||| ||||||||| | Sbjct 717 ATTTCGATTAGGCCTGAAAATATTACCGATTGGGCCCATTGGTTGGGGTCATAGTCT-GC 775 Query 780 AG-AGGGATCCACGTCACTAGGAAGCTTTTTACCTCATGACCGGGATTGTCTAGATTGGT 838 || |||| |||| |||||||||||||||||| ||||| |||||||||||| | ||||||| Sbjct 776 AGGAGGGGTCCATGTCACTAGGAAGCTTTTTGCCTCAGGACCGGGATTGTTTGGATTGGT 835 Query 839 TGGACCGGCAGATTCCCGGTTCGGTTATATATGTTGCCTTTGGGAGTTTTGGGGTCATGG 898 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 836 TGGACCGGCAGATTCCCGGTTCGGTGATATATGTTGCCTTTGGGAGTTTTGGGGTTATGG 895 Query 899 GCAACCCTCAGTTAGAAGAGCTAGCAATTGGTCTAGAGCTTACCAAGAGGCCAGTTTTGT 958 || || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 GCGACGTTCAATTAGAAGAGCTAGCAATTGGTCTAGAGCTTACCAAGAGGCCAGTTTTGT 955 Query 959 GGGTCACTGGTGATCAACAACCAATCAAACTTGGGTCGGATCGAGTCAAAGTGGTGAGAT 1018 |||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||| Sbjct 956 GGGTCACTGGTGATCAACAAACAATCAAACTCGTGTCGGATCGAGTCAAAGTGGTGAGAT 1015 Query 1019 GGGCTCCACAACGGGAGGTCCTTTCTTCTGGAGCCATTGGGTGTTTTGTGAGCCATTGTG 1078 ||||||||||||||||||| |||| || |||||||||||| ||||| ||||||||||||| Sbjct 1016 GGGCTCCACAACGGGAGGTTCTTTTTTGTGGAGCCATTGGATGTTTCGTGAGCCATTGTG 1075 Query 1079 GATGGAATTCAACTCTGGAAGGAGCCCAAAATGGCATACCATTTCTATGCATCCCTTATT 1138 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1076 GATGGAATTCAACTCTGGAAGGAGCCCAAAATGGTATACCATTTCTATGCATCCCTTATC 1135 Query 1139 TTGCAGACCAATTTATCAACAAAGCATATATATGCGATGTGTGGAAGATTGGATTAGGAC 1198 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 TTGCAGACCAATTTATCAACAAAGCATATATATGCGATGTGTGGAAGATTGGATTAGGAG 1195 Query 1199 TTGAAAGAGACGCACGAGGAGTGGTTCCGAGGTTAGAGGTTAAGAAGAAGATCGATGAGA 1258 |||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1196 TTGAGAGAGACGAACGAGGAGTGGTTCCGAGGTTAGAGGTGAAGAAGAAGATCGATGAGA 1255 Query 1259 TCATGAGAGACGGTGGAGAGTATGAAGAACGAGCTATGAAGGTTAAAGAGATTGTGATGA 1318 ||||||| ||| |||||||||| ||||||||||||||||| |||||||| ||||||||| Sbjct 1256 TCATGAGTGACTATGGAGAGTATAAAGAACGAGCTATGAAGATTAAAGAGGTTGTGATGA 1315 Query 1319 AAAGTGTTGCAAAAGATGGAATATCTTGTGAGAATCTTAATAAATTTGTCAACTGGATCA 1378 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1316 AAAGTGTTGCAAAAGATGGAATTTCTTGTGAGAATCTTAATAAATTTGTCAACTGGATCA 1375 Query 1379 AATCACAAGTGAATTGA 1395 ||||||||||| ||||| Sbjct 1376 AATCACAAGTGTATTGA 1392 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52145545405 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5