BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02100.1
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903001 jgi|Araly1|903001|Al_scaffold_0003_129 2119 0.0
> Ahg903001 jgi|Araly1|903001|Al_scaffold_0003_129
Length=1392
Score = 2119 bits (1147), Expect = 0.0
Identities = 1315/1397 (94%), Gaps = 7/1397 (1%)
Strand=Plus/Plus
Query 1 ATGGATAATAACTCAAATAAAAGAATGGGAAGGCCACATGTTGTGGTCATACCTTACCCT 60
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATAATAACTTAAATAAAAGAATGGGAAGGCCACATGTTGTGGTCATACCTTACCCA 60
Query 61 GCACAAGGTCATGTTCTTCCTCTAATAAGTTTCTCACGTTACCTTGCGAAACAAGGAATC 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GCACAAGGTCATGTTCTTCCTCTAATGAGTTTCTCACGTTACCTTGCGAAACAAGGAATC 120
Query 121 CAAATTACATTCATAAACACCGAGTTTAACCATAACCGCATCATCAGTTCCTTACCCAAT 180
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 121 CAAATTACATTCATAAACACCGAGTTTAACCATAATCGCATCATCAATTCCTTACCCAAT 180
Query 181 TCACCTCATGAAGATTATGTTGGGGATCAGATCAATCTTGTTTCAATCCCTGACGGTTTA 240
||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 181 TCATCTCATGAAGATTATGTTGGGGATGGGATCAATCTTGTTTCAATCCCCGACGGTTTA 240
Query 241 GAAGATTCACCAGAAGAGAGGAACATTCCAGGGAAGTTGTCGGAGTCTGTTTTGCGTTTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGATTCACCAGAAGAGAGGAACATTCCAGGGAAGTTGTCGGAGTCTGTTTTGCGTTTT 300
Query 301 ATGCCTAAAAAAGTAGAGGAATTGATCGAGAGGATGA-TGGCAGAAACTAGCGGTGGTAC 359
||||||||||||||||||||||||||| | ||| | | || | | ||| | |||||
Sbjct 301 ATGCCTAAAAAAGTAGAGGAATTGATC--GCGGA-AACTAGCGGTGGC-AGCTGCGGTAC 356
Query 360 GATCATTAGCTGCGTTGTAGCGGATCAGAGCTTGGGATGGGCAATTGAAGTTGCAGCTAA 419
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 357 AATCATTAGCTGCGTTGTAGCGGATCAGAGCTTGGGATGGGCAATCGAAGTTGCAGCTAA 416
Query 420 GTTTGGGATCAGACGCACCGCGTTTTGTCCTGCTGCAGCTGCGTCTATGGTTCTTGGATT 479
|||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||
Sbjct 417 GTTTGGGATCAGACGCGCCGCGTTTTGTCCTGCCGCGGCTGCGTCTATGGTTCTTGGATT 476
Query 480 TAGTATTCAAAAACTTATCGATGATGGTCTCATAGATTCTGATGGGACTGTGAGAGTAAA 539
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||
Sbjct 477 TAGTATTCAAAAACTTATTGATGATGGTCTCATAGATTTTGATGGGACTGTGAGGGTAAA 536
Query 540 TAAGACAATTCAACTATCTCCCGGGATGCCAAAGATGGAAACAGACAAGTTTGTGTGGGT 599
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TAAGACAATTCAGTTATCTCCCGGGATGCCAAAGATGGAAACAGACAAGTTTGTGTGGGT 596
Query 600 TTGTCTGAAGAACAAAGAATCTCAGAAAAACATATTCCAACTTATGCTTCAAAACAATAA 659
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 597 TTGTCTGAAGAACAAAGAATCTCAGAAGAACATATTCCAACTTATGCTTCAAAACAATAA 656
Query 660 CTCGATCGAGTCAACGGATTGGTTGTTGTGTAACTCTGTCCATGAACTTGAAACTGCAGC 719
||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 657 CTCAATCGAGTCAACGGATTGGTTGTTGTGTAACTCTGTCTATGAACTCGAAACGGCAGC 716
Query 720 ATTTGGATTGGGCCCGAATATAGTACCAATTGGGCCCATTGGTTGGGCTCATAGTCTTGA 779
|||| |||| |||| ||| ||| |||| ||||||||||||||||||| ||||||||| |
Sbjct 717 ATTTCGATTAGGCCTGAAAATATTACCGATTGGGCCCATTGGTTGGGGTCATAGTCT-GC 775
Query 780 AG-AGGGATCCACGTCACTAGGAAGCTTTTTACCTCATGACCGGGATTGTCTAGATTGGT 838
|| |||| |||| |||||||||||||||||| ||||| |||||||||||| | |||||||
Sbjct 776 AGGAGGGGTCCATGTCACTAGGAAGCTTTTTGCCTCAGGACCGGGATTGTTTGGATTGGT 835
Query 839 TGGACCGGCAGATTCCCGGTTCGGTTATATATGTTGCCTTTGGGAGTTTTGGGGTCATGG 898
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 836 TGGACCGGCAGATTCCCGGTTCGGTGATATATGTTGCCTTTGGGAGTTTTGGGGTTATGG 895
Query 899 GCAACCCTCAGTTAGAAGAGCTAGCAATTGGTCTAGAGCTTACCAAGAGGCCAGTTTTGT 958
|| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GCGACGTTCAATTAGAAGAGCTAGCAATTGGTCTAGAGCTTACCAAGAGGCCAGTTTTGT 955
Query 959 GGGTCACTGGTGATCAACAACCAATCAAACTTGGGTCGGATCGAGTCAAAGTGGTGAGAT 1018
|||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||
Sbjct 956 GGGTCACTGGTGATCAACAAACAATCAAACTCGTGTCGGATCGAGTCAAAGTGGTGAGAT 1015
Query 1019 GGGCTCCACAACGGGAGGTCCTTTCTTCTGGAGCCATTGGGTGTTTTGTGAGCCATTGTG 1078
||||||||||||||||||| |||| || |||||||||||| ||||| |||||||||||||
Sbjct 1016 GGGCTCCACAACGGGAGGTTCTTTTTTGTGGAGCCATTGGATGTTTCGTGAGCCATTGTG 1075
Query 1079 GATGGAATTCAACTCTGGAAGGAGCCCAAAATGGCATACCATTTCTATGCATCCCTTATT 1138
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1076 GATGGAATTCAACTCTGGAAGGAGCCCAAAATGGTATACCATTTCTATGCATCCCTTATC 1135
Query 1139 TTGCAGACCAATTTATCAACAAAGCATATATATGCGATGTGTGGAAGATTGGATTAGGAC 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TTGCAGACCAATTTATCAACAAAGCATATATATGCGATGTGTGGAAGATTGGATTAGGAG 1195
Query 1199 TTGAAAGAGACGCACGAGGAGTGGTTCCGAGGTTAGAGGTTAAGAAGAAGATCGATGAGA 1258
|||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1196 TTGAGAGAGACGAACGAGGAGTGGTTCCGAGGTTAGAGGTGAAGAAGAAGATCGATGAGA 1255
Query 1259 TCATGAGAGACGGTGGAGAGTATGAAGAACGAGCTATGAAGGTTAAAGAGATTGTGATGA 1318
||||||| ||| |||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 1256 TCATGAGTGACTATGGAGAGTATAAAGAACGAGCTATGAAGATTAAAGAGGTTGTGATGA 1315
Query 1319 AAAGTGTTGCAAAAGATGGAATATCTTGTGAGAATCTTAATAAATTTGTCAACTGGATCA 1378
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1316 AAAGTGTTGCAAAAGATGGAATTTCTTGTGAGAATCTTAATAAATTTGTCAACTGGATCA 1375
Query 1379 AATCACAAGTGAATTGA 1395
||||||||||| |||||
Sbjct 1376 AATCACAAGTGTATTGA 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52145545405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5