BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02110.1
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477440 jgi|Araly1|477440|fgenesh2_kg.3__141__AT3G02110.1 2665 0.0
> Ahg477440 jgi|Araly1|477440|fgenesh2_kg.3__141__AT3G02110.1
Length=1642
Score = 2665 bits (1443), Expect = 0.0
Identities = 1582/1649 (96%), Gaps = 10/1649 (1%)
Strand=Plus/Plus
Query 1 AGACAAGCTAAAGGTAGAACTGTAGAGGCCAATCTCAAAAAGTCTCCGACACTCTCTAGA 60
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1 AGACAAGCTAAAGGTAGAACTGTAGAAGCCAATCTC-AAAAGTCTCCGACACTCTCTAGA 59
Query 61 TTTCCTTTGCTCCTTCGTTCTGGCCATGGCAATGGCAAAACTCGCAATTTTCACCACTCT 120
|||||||| ||||||| |||||||||||||||||||||||| || |||||||||||||||
Sbjct 60 TTTCCTTTTCTCCTTCTTTCTGGCCATGGCAATGGCAAAACACGTAATTTTCACCACTCT 119
Query 121 TATGGCCATACTCGTAATGACATCTCAAGGAAGGATTCCAACAGAAGGAGGAGAGAAAGA 180
||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 120 CATGGCCATACTTGTAATGACATCTCAAGGAAGAATTCCAAC---AGGAGGAGAGAAAGA 176
Query 181 AGCAGAGGCTGACAGAATTACGTCACTTCCAGGTCAGCCTAACGTCACGTTCGAGCAGTT 240
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 177 AGCAGAGGCTGACCGAATTACGTCACTTCCAGGTCAGCCTAAAGTCACGTTCGAGCAGTT 236
Query 241 TTCCGGCTACGTCACCGTCGATAAACTCTCCGGAAGATCACTCTTTTATTGGCTCACTGA 300
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 237 TTCCGGCTATGTCACCGTCGATAAACTCTCCGGAAGATCACTCTTTTACTGGCTCACCGA 296
Query 301 AGCTTCTGACCTCCCTCTCTCCAAACCTCTCGTAATTTGGCTCAACGGAGGACCGGGATG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 297 AGCTTCTGACCTCCCTCTCTCCAAACCTCTCGTAATTTGGCTCAACGGAGGACCGGGGTG 356
Query 361 TTCGTCGGTAGCGTACGGTGCGTCGGAGGAGATTGGACCATTCAGGATAAGCAAAGGTGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTCGTCGGTAGCGTACGGTGCGTCGGAGGAGATTGGACCATTCAGGATAAGCAAAGGTGG 416
Query 421 TTCCGGTTTGTATCTCAACAAGTTCGCATGGAACTCAATCTCCAATCTCTTGTTCCTCGA 480
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 417 TTCCGGTTTGTATCTCAACAAATTCGCTTGGAACTCAATCTCCAATCTCTTGTTCCTCGA 476
Query 481 AGCTCCCGCCGGCGTCGGCTTCTCTTACACTAACCGCTCCTCCGATCTCTTCAACACCGG 540
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 477 AGCTCCTGCCGGCGTTGGCTTCTCTTACACTAACCGCTCCTCCGATCTATTCAACACCGG 536
Query 541 TGATCGCCGTACCGCCAAAGATTCACTTCAGTTTCTTATTCAATGGCTTCACCGGTTTCC 600
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CGATCGTCGTACCGCCAAAGATTCACTTCAGTTTCTTATTCAATGGCTTCACCGGTTTCC 596
Query 601 GAGATACAACCACCGGGAAATCTACATCACCGGCGAGAGTTACGCCGGACATTACGTTCC 660
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GAGATACAACCACCGAGAAATCTACATCACCGGCGAGAGTTACGCCGGACATTACGTTCC 656
Query 661 TCAGCTGGCCAAAGAGATCATGAATTACAACAAACGATCAAAGAATCCGTTAAATCTCAA 720
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TCAGCTCGCCAAAGAGATCATGAATTACAACAAACGATCAAAGAATCCGTTAAATCTCAA 716
Query 721 AGGAATCATGGTTGGAAACGCGGTGACGGACAATCACTATGATAACCTAGGAACGGTTTC 780
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 717 AGGAATCATGGTTGGAAACGCGGTGACAGACAATCACTATGATAACCTCGGAACGGTGTC 776
Query 781 GTATTGGTGGAGCCACGCGATGATCTCTGATCGGACGTATCATCAGTTGATAAGCACTTG 840
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 777 GTATTGGTGGAGCCACGCGATGATCTCTGATCGGACGTATCATCAGTTAATAAACACTTG 836
Query 841 CGATTTTAGTCGTCAGAAGGAATCTGATGAATGCGAAACCCTTTATTCTTACGCTATGGA 900
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 837 CGATTTTAGTCGCCAGAAGGAATCTGATGAATGTGAAACCCTTTATTCTTACGCTATGGA 896
Query 901 GCAGGAGTTTGGTAACATTGATCAGTACAACATCTATGCGCCGCCGTGTAACAAGTCAAG 960
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 897 GCAGGAGTTTGGTAACATCGATCAGTACAACATCTATGCACCGCCGTGTAACAAGTCAAG 956
Query 961 CGACGGTGGTGGTAGCTACAATGGTTCTTCCGGCCGCCGGAGTATGCGGCTTCCTCACCT 1020
|||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 957 TGACGGTGGTGGTGGCTACACTGGTTCATCCGGCCGCCGGAGTATGCGGCTTCCTCACCT 1016
Query 1021 TCCCCACTCCGTATTGAGGAAAATTTCCGGTTATGATCCATGTACCGAGAGATATGCAGA 1080
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1017 TCCCCACTCCGTATTGAGGAAAATTTCCGGTTATGATCCGTGTACGGAGAGATATGCAGA 1076
Query 1081 GATCTATTATAACCGGCCTGATGTTCAGAAAGCTCTTCACGCCAACACCACCAAGATTCC 1140
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1077 GATCTATTATAACCGGCCTGATGTTCAGAAAGCTCTTCATGCCAATACCACCAAGATTCC 1136
Query 1141 GTATAAATGGACAGCTTGCAGTGAGGTGCTAAACCGGAATTGGAACGACACAGATTCAAC 1200
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1137 ATATAAATGGACAGCTTGCAGTGAGGTGCTAAACCGGAATTGGAATGATACAGATTCAAC 1196
Query 1201 GGTTCTCCCTATATACCGGGAAATGATTGCCGGCGGAATTAGAGTTTGGGTTTTCAGTGG 1260
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1197 GGTTCTCCCTATATACCGGGAAATGATTGCCGGCGGGATTAGAGTTTGGGTTTACAGTGG 1256
Query 1261 TGACGTCGATTCAGTTGTACCAGTGACAGCTACTAGATACTCACTAGCAAGACTTAGTTT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TGACGTCGATTCAGTTGTACCAGTGACAGCTACTAGATACTCACTAGCAAGACTTAGTTT 1316
Query 1321 GAGTACCAAACTTCCTTGGTATCCTTGGTATGTCAAGAAACAGGTTGGAGGATGGACGGA 1380
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 1317 GAGTACCAAACTTCCTTGGTATCCTTGGTACGTCAAGAAACAGGTCGGCGGATGGACGGA 1376
Query 1381 AGTGTATGAAGGACTAACGTTCGTGACGGTTAGAGGAGCAGGTCACGAGGTGCCATTGTT 1440
|||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1377 AGTGTACGACGGACTAACGTTCGTGACGGTGAGAGGAGCAGGTCACGAGGTGCCATTGTT 1436
Query 1441 CAAGCCACGTGCTGCTTTTGAGCTTTTTAAGTATTTCTTGAGAGGCAAGCCACTTCCAAA 1500
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1437 CAAGCCACGTGCTGCTTTTGAGCTATTTAAGTATTTCTTGAGAGGCAAGCCACTTCCAAA 1496
Query 1501 GGCTTaaaaaa-aTTGAAGTCAAGAGAGAGATTGTAACATTTGAAATCATGCCCGAGA-A 1558
||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||| |
Sbjct 1497 GGCTTGAAAAACATTGAAGTCAAGAGAGA--TTGTAACATTTTAAATCATGCCCGAGAGA 1554
Query 1559 AAATGAAAATGTAAAGTTTGGGTTATGAGATGGTATTTAATTAAATCT-AGTCTATTAAT 1617
||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct 1555 AAA-GAAAATGTAAAGTTTGGGTTATGAGATGGTATTTAATTAAGTCTTAGTCTATTATT 1613
Query 1618 GACAGCAAGTATTTAATTATTTAGCCTAT 1646
|||| ||||||||||||||||||||||||
Sbjct 1614 GACAACAAGTATTTAATTATTTAGCCTAT 1642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61744287145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5