BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02125.1
Length=1298
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903003 jgi|Araly1|903003|Al_scaffold_0003_131 1467 0.0
> Ahg903003 jgi|Araly1|903003|Al_scaffold_0003_131
Length=1413
Score = 1467 bits (794), Expect = 0.0
Identities = 985/1073 (92%), Gaps = 30/1073 (3%)
Strand=Plus/Plus
Query 11 AAACTGAAAACAAAGAACATCAATGGAAGGATTCAG-TTTCTTCAAGGTCATCTTCACGA 69
|||||||||| |||||||||||||||||| |||| | | |||||||||||||||||||||
Sbjct 356 AAACTGAAAATAAAGAACATCAATGGAAGCATTC-GATGTCTTCAAGGTCATCTTCACGA 414
Query 70 TCGTCATCGATAACATCTGCTTCTTCGGATGGACACTTTGATATCCGACACTTTCCTCTT 129
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 415 TCTTCATCGATAACATCTGCTTCTTCGGATGGCCACTTTGATATCCGACACTTTCCTCTT 474
Query 130 CCCAAGCCATCATTGTCTGCTTCTGAGGCACAGAAACTGAGAGAGTCACATCAGGCTTAT 189
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CCTAAGCCATCATTGTCTGCTTCTGAGGCACAGAAACTGAGAGAGTCACATCAGGCTTAT 534
Query 190 AATTCATCTGTTAGCTCATATACCAGTTCCTCTTGGTCCTCAAATCACCAGAACCATCTT 249
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 535 AATTCATCTGTTAGCTCTTATACCAGTTCGTCTTGGTCCTCAAATCACCAGAACCACCTT 594
Query 250 ATTGATTTACCCGGTTACGATCCAACCAGAATTCCATCCTCAGTTTTCTCTAGTAAACCG 309
||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||
Sbjct 595 GTTGATTTACCCGGTTACGATCCATCCCGAATTCCATCTTCAGTTTTCTCTAGTAAACCG 654
Query 310 GGTAATTCGACGGAATGGAGTCTAGCTTCTAATGAATCTTTGTTTAGCATCCACGATGGG 369
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GGTAATTCGACTGAATGGAGTCTAGCTTCTAATGAATCTTTGTTTAGCATCCACGATGGG 714
Query 370 AATTTTAGCATTTCAACAGCGTTGAGATTGGCTGAGATACCGAGATTTGAAGAAACGGTT 429
|||||||||||||||||||| || ||||||||||||||||| | |||||||||||| |||
Sbjct 715 AATTTTAGCATTTCAACAGCATTAAGATTGGCTGAGATACCAAAATTTGAAGAAACTGTT 774
Query 430 CACGTGATAACCGAAATCAACTCGGTT-C-C-T-CT--TCC---ACCTCCGGTTAAGAAA 480
|||| |||||||||||||||| ||||| | | | || ||| |||||||| ||| |||
Sbjct 775 CACGAGATAACCGAAATCAACACGGTTCCTCTTCCTCCTCCTTTACCTCCGGGTAAAAAA 834
Query 481 CCAAATGAATATGAGAAAGAGACGATTGCAGAGAAGGAACCATACCAGGTGGAGAACTCA 540
|||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| | |
Sbjct 835 CCAAATGAATCTGAGAAAGAGACGATTTCAGAGGAGGAACCATACCAGGTGGAGAATTTA 894
Query 541 AACTCAGATATTGAGGATAAtgaag-a--agaagagaagatgagtgaagtcgagagcgac 597
|||| || ||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 895 GACTCTGAGATTGACAATAATGAAGAAGGAGAAGAGAAGATGAGTGAAGTCGAGAGCGAC 954
Query 598 gacgaacatgaagaagaaCAAACAGATATGATCGAAGCGGAGGCTTTAGTAGAGAAAGAA 657
|| |||||| | | |||||||||||||||||||| ||||||||||||||||
Sbjct 955 GATGAACAT------G-----A-AGATATGATCGAAGCGGAGGTTTTAGTAGAGAAAGAA 1002
Query 658 GTAATAGAAACTGTGAAGGAGAATAAACCTGAAGACTCGAACAGTATAGTTTCACATTCT 717
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1003 GTAATAGAAACTGTGAAGGAGAATAAACCAGAAGACTCGAACAGTATAGTTTCACATTCC 1062
Query 718 CCGAGCATTTCTTGTCGTTCGGACACTAGCAATAACAGCATTGGTTCTTTCGCATTCCCA 777
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1063 CCGAGCATTTCTTGTCGTTCGGACACCAGCAATAACAGCATTGGTTCTTTCGCATTCCCA 1122
Query 778 CTATTGCAAAAAGAAGATGCAGTTACCAAAACGCCGTCTATGCAAATCAAAGGAAACGTT 837
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 1123 CTATTGCAAAAAGAAGATGCAGTTATTAAAACGCCGTCTGTGCAAATCAAAGGAAACCTT 1182
Query 838 TCCCACAAGCGAAGACCCGAGTATCAGCTGCCTCAATCGCGAATGCTACAGCCACAACAA 897
||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1183 TCCCACAAGCGAAAACCTGAGTATCAGCTGCCTCAATCGCGAATGCTACTGCCACAACAG 1242
Query 898 CAACTACAACCTTATTCAGAATCTAATATGCTAACTGAGTCTCAGCCGGAACCACAACCA 957
||||| ||||||||||||||||||| |||||||||||| ||| || ||||| || | |||
Sbjct 1243 CAACTGCAACCTTATTCAGAATCTAGTATGCTAACTGAATCTGAGTCGGAATCA-ATCCA 1301
Query 958 -CAAAGGAAGGCATCaaaaaaaTTCGAGTCTCGAACGCAATCGCTAAAAGCTTCAAGAAC 1016
|||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1302 ACAAAGGAAGGCATCGAAAAAATTCGAATCTCCAACGCAATCGCTAAAAGCTTCAAGAAC 1361
Query 1017 CTGCTGGTTCTCTTGCTTCCATTGTCCTTCAAAATGCGGT-TCATTCAAGTAG 1068
|||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 1362 ATGCTGGTTCTCTTGCTTCCATTGTCCTTCAAAATGCAGTAT-ATTCAAGTAG 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48530473341
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5