BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02130.1
Length=3680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477442 jgi|Araly1|477442|fgenesh2_kg.3__143__AT3G02130.1 4776 0.0
Ahg946863 jgi|Araly1|946863|scaffold_703092.1 466 5e-130
> Ahg477442 jgi|Araly1|477442|fgenesh2_kg.3__143__AT3G02130.1
Length=3198
Score = 4776 bits (2586), Expect = 0.0
Identities = 2966/3150 (94%), Gaps = 23/3150 (1%)
Strand=Plus/Plus
Query 494 GGGGAATGGAGAAGCTTGAAGTTCTTGATCTGGAAGGGAATTTGATGACGGGGTCATTGC 553
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1 GGGGGATGGAGAAGCTTGAAGTTCTTGATCTGGAAGGGAATTTGATGACCGGGTCGTTGC 60
Query 554 CGGA-TCAGTTTACTGGGTTACGGAATTTGCGGGTTATGAATTTGGGGTTTAACAGAGTT 612
| | ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 61 C-TATTCAGTTTACTGGGTTACGGAATTTGCGGGTTATGAATTTAGGGTTTAACCGAGTT 119
Query 613 TCAGGTGAAATCCCTAATTCGCTGCAGAATCTGACAAAGTTGGAGATTTTGAATTTGGGT 672
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 120 TCAGGTGAAATCCCTAATTCGCTGAAGAATCTGTCAAAGTTGGAGATTTTGAATTTGGGT 179
Query 673 GGTAATAAGTTGAATGGAACTGTTCCTGGTTTTGTTGGGAGATTCAGAGTGTTGCATTTG 732
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 180 GGTAATAAGTTGAATGGAACTGTTCCTGGTTTTGTTGGGAGATTCAGAGTGGTGCACTTG 239
Query 733 CCGTTAAACTGGCTTCAAGGCTCTTTGCCTAAAGATATTGGGGATAGCTGTGGAAAGCTT 792
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 240 CCGTTAAACTGGCTTCAAGGCTCTTTGCCTAAAGATATTGGGGATAACTGTGGAAATCTT 299
Query 793 GAGCATTTAGATTTGTCTGGTAATTTCTTGACTGGGAGGATTCCAGAGAGTTTGGGGAAA 852
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 GAGCATTTAGATTTGTCTGGTAATTTCTTGACTGGGAGGATTCCAGAGAGTTTGGGGAGA 359
Query 853 TGT-GCTGGTTTAAGGTCGTTGTTGTTGTATATGAATACGTTGGAGGAGACTATCCCTTT 911
||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGTGGC-GTTTTAAGGTCGTTGTTGTTGTATATGAATACGTTGGAGGAGACTATCCCTTT 418
Query 912 AGAATTTGGGAGTCTTCAGAAGCTTGAGGTTTTGGATGTTTCTAGGAACACTCTTAGTGG 971
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGAATTTGGGAATCTTCAGAAGCTTGAGGTTTTGGATGTTTCTAGGAACACTCTTAGTGG 478
Query 972 TCCATTACCTGTTGAACTTGGAAATTGCTCTTCGTTGTCTGTTCTCGT-TCTATCAAATC 1030
||||||||||||| |||| || |||||||||| ||||||||||||||| | |||| ||||
Sbjct 479 TCCATTACCTGTTCAACTCGGGAATTGCTCTTTGTTGTCTGTTCTCGTGT-TATCCAATC 537
Query 1031 TGTACAATGTGTATGAAGACATTAATAGTGTAAGAGGGGAAGCTGATCTTCCTCCAGGCG 1090
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 538 TGTACAATGTGTATGAAGACATTAATAGTATAAGAGGGGAAGCTGATCTACCTCCAGGCG 597
Query 1091 CTGATTTAACCTCGATGACCGAGGATTTCAATTTCTATCAAGGAGGAATCCCGGAGGAAA 1150
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 598 CTGATTTAACCTCGATGACCGAGGATTTCAATTTCTATCAAGGAGGAATTCCGGAGGAAA 657
Query 1151 TCACTAGGCTTCCGAAACTAAAGATACTTTGGGTGCCCAGAGCTACGTTAGAAGGTAGAT 1210
|||||| |||||||||||||||||||||||||||||| || ||||| |||||||| ||||
Sbjct 658 TCACTACGCTTCCGAAACTAAAGATACTTTGGGTGCCAAGGGCTACTTTAGAAGGGAGAT 717
Query 1211 TTCCAGGAGATTGGGGTTCATGTCAAAACTTGGAGATGGTTAATTTGGGTCAGAACTTCT 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTCCAGGAGATTGGGGTTCATGTCAAAACTTGGAGATGGTTAATTTGGGTCAGAACTTCT 777
Query 1271 TTAAAGGCGAAATTCCTGTCGGTCTTAGTAAATGCAAGAACCTTCGTCTTCTTGATTTGA 1330
||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 778 TTAAAGGTGAAATTCCTGTCGGTCTTAGTAACTGTAAGAACCTTCGTCTTCTTGATTTGA 837
Query 1331 GCTCGAATAGGCTTACTGGG-GAGCTTCTCAAAGAGATTTCGGTCCCATGCATGAGTGTT 1389
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 838 GCTCGAATAGGCTTAC-GGGAGAGCTTCTCAAAGAGATTTCGGTCCCATGCATGAGTGTT 896
Query 1390 TTTGATGTTGGTGGAAACAGCTTATCGGGTGTAATCCCTGATTTTCTCAACAATACCACA 1449
||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 897 TTTGATGTTGGTGGAAATAGCTTATCGGGTGTAATCCCTGAGTTTCTCAAAAATACCACA 956
Query 1450 AGCCATTGTCCTCCTGTTGTTTACTTTGACAGGTTTTCTATTGAATCTTACAGCGACCCG 1509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AGCCATTGTCCTCCTGTTGTTTACTTTGACAGGTTTTCTATTGAATCTTACAGCGACCCG 1016
Query 1510 TCGTCTGTTTATCTCTCCTTCTTTACCGAGAAGGCTCAAGTTGGAACTTCCCTGATAGAT 1569
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1017 TCGTCTGTTTATCTCTCCTTCTTCACCGAGAAGGCTCAAGTTGGAACTTCCCTGATAGAT 1076
Query 1570 CTTGGAAGTGATGGAGGTCCGGCCGTGTTTCATAATTTTGCAGACAACAACTTCACTGGT 1629
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CTTGGAGGTGATGGAGGTCCGGCCGTGTTTCATAATTTTGCAGACAACAACTTCACTGGT 1136
Query 1630 ACTCTCAAGTCTATACCACTTGCACAGGAGCGGTTGGGAAAGCGAGTCTCTTACATATTT 1689
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1137 ACTCTCAAGTCTATACCACTTGCACAAGAGCGGTTGGGAAAGCGAGTCTCTTACATATTT 1196
Query 1690 TCTGCTGGAGGGAATCGGTTGTACGGGCAATTTCCGGGAAATCTGTTTGATAACTGCGAC 1749
|||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 1197 TCTGCTGGAGGGAACCGGTTGTACGGGCAATTCCCTGGAAATCTGTTCGATAACTGCGAC 1256
Query 1750 GAACTCAAAGCTGTTTATGTCAATGTAAGCTTCAACAAGCTCTCAGGTCGGATTCCTCAG 1809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GAACTCAAAGCTGTTTATGTCAATGTAAGCTTCAACAAGCTCTCAGGTCGGATTCCTCAG 1316
Query 1810 GGACTAAACAACATGTGCACTTCTCTTAAGATTCTTGATGCCTCGGTGAATCAGATCTTC 1869
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1317 GGACTAAACAACATGTGCACTTCTCTTAAGGTTCTTGATGCCTCGTTGAATCAGATCTTC 1376
Query 1870 GGGCCAATCCCAACAAGTCTCGGGGATCTAGCTTCACTTGTTGCTCTTAATCTGAGCTGG 1929
||||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1377 GGGCCAATCCCTTCGAGTCTCGGGGATCTAGGTTCGCTTGTTGCTCTTAATCTGAGCTGG 1436
Query 1930 AATCAGTTGCAAGGTCAGATACCGGGTAGCCTCGGGAAGAAGATGGCAGCTTTGACATAT 1989
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1437 AATCAGTTGCAAGGTCAGATACCGGGTAGCCTCGGGAAGAAGATGACAGCTTTGACATAT 1496
Query 1990 CTTTCGATTGCGAATAACAACCTCACGGGGCAAATTCCTCAGAGCTTTGGTCAGTTACAT 2049
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 CTTTCGATTGCGAATAATAACCTCACGGGGCAAATTCCTCAGAGCTTTGGTCAGTTACAT 1556
Query 2050 TCCTTGGATGTTCTTGATCTCTCTTCAAATCATCTATCTGGCGGTATTCCTCATGATTTC 2109
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1557 TCCTTGGATGTTCTTGATCTCTCTTCAAATTATCTATCTGGCGGCATTCCTCATGATTTT 1616
Query 2110 GTAAACTTGAAGAATCTCACTGTCCTGCTTCTCAACAATAACAACCTCTCTGGCCCAATC 2169
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 ATAAACTTGAAGAATCTCACTGTCCTGCTTCTCAACAATAACAACCTCTCTGGCCCAATC 1676
Query 2170 CCGTCGGGTTTTGCGACATTTGCTG-TTTTCAATGTTTCCTCCAACAATCTGTCTGGTCC 2228
|| || ||||| || |||||||| | |||||||||||||||||||||||||||| |||||
Sbjct 1677 CCATCTGGTTTCGCAACATTTGC-GATTTTCAATGTTTCCTCCAACAATCTGTCAGGTCC 1735
Query 2229 AGTTCCTTCAACCAATGGACTGACGAAATGCAGCACTGTTAGTGGAAACCCCTATCTTCG 2288
||||||||||||||| || ||||||||||||||| | || |||||||||||||||||||
Sbjct 1736 AGTTCCTTCAACCAACGGGCTGACGAAATGCAGCGGTATTCGTGGAAACCCCTATCTTCG 1795
Query 2289 ACCTTGCCATGTGTTTTCTCTGACAACACCGTCTTCGGATTCCCGAGACTCCACGGGTGA 2348
|||||||||||||||||||||||| || ||||||||||| |||||||||||||| || ||
Sbjct 1796 ACCTTGCCATGTGTTTTCTCTGACGACTCCGTCTTCGGAATCCCGAGACTCCACAGGAGA 1855
Query 2349 TTCTATCACGCAGGATTACGCATCTTCGCCTGTTGAAAACGCTCCATCTCAGTCGCCAGG 2408
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1856 TTCTATCACACAGGATTACGCATCTTCACCTGTTGAAAACGCTCCATCTCAGTCGGCAGG 1915
Query 2409 AAAGGGTGGATTCAACTCGCTAGAGATCGCCTCAATCGCATCAGCTTCAGCGATTGTCTC 2468
|||||| |||||||||||||||||||| || ||||| |||||||||||||| ||||||||
Sbjct 1916 AAAGGGCGGATTCAACTCGCTAGAGATTGCTTCAATTGCATCAGCTTCAGCAATTGTCTC 1975
Query 2469 GGTACTAATTGCTCTTGTAATTCTCTTCTTCTACACAAGGAAATGGCATCCGAAATCGAA 2528
||| || || |||||||| ||||| ||||||||||| || ||||||||||||||||||||
Sbjct 1976 GGTTCTGATCGCTCTTGTGATTCTTTTCTTCTACACGAGAAAATGGCATCCGAAATCGAA 2035
Query 2529 GATCATGGCCACTACAAAACGAGAAGTCACTATGTTCATGGATATCGGAGTTCCAATAAC 2588
||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 2036 GATCATGGCCACTACAAAACGTGAAGTCACTATGTTTATGGACATCGGAGTTCCAATAAC 2095
Query 2589 CTTTGACAACGTGGTTAGAGCCACAGGAAACTTCAACGCAAGCAATCTGATTGGAAATGG 2648
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 2096 CTTTGACAACGTGGTTAGAGCCACAGGAAACTTCAATGCGAGCAATCTGATTGGAAACGG 2155
Query 2649 TGGATTTGGAGCGACCTACAAAGCAGAAATCTCTCAAGATGTGGTTGTCGCAATCAAACG 2708
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2156 TGGATTTGGAGCGACCTACAAAGCAGAAATCTCTCAAGACGTGGTTGTGGCAATCAAACG 2215
Query 2709 CCTCTCGATCGGACGGTTTCAGGGAGTCCAACAGTTCCACGCAGAAATCAAAACTCTTGG 2768
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2216 CCTCTCTATCGGACGGTTTCAGGGCGTCCAACAGTTCCACGCAGAGATCAAAACTCTTGG 2275
Query 2769 TAGACTTCGACACCCGAACCTCGTGACTCTCATCGGTTACCACGCTAGCGAAACTGAGAT 2828
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 2276 TAGACTTCGACACCCGAATCTCGTGACTCTCATTGGTTACCACGCTAGCGAAACGGAGAT 2335
Query 2829 GTTCTTGGTGTACAACTATCTCCCAGGAGGCAACCTCGAGAAATTCATCCAAGAAAGATC 2888
|||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2336 GTTCCTGATTTACAACTATCTCCCAGGAGGCAACCTCGAGAAATTCATCCAAGAAAGATC 2395
Query 2889 CACAAGAGATTGGAGAGTTCTTCATAAGATCGCTCTGGACATAGCTCGAGCACTCGCTTA 2948
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2396 CACAAGAGATTGGAGAGTTCTTCACAAGATCGCCCTGGACATAGCTCGAGCACTCGCTTA 2455
Query 2949 CCTCCACGACCAATGCGTCCCACGGGTGCTTCACCGAGATGTTAAACCGAGTAACATCCT 3008
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2456 CCTCCACGACCAATGCGTCCCACGGGTGCTTCACCGAGATGTTAAACCAAGCAACATCCT 2515
Query 3009 CCTAGATGATGACTGCAATGCGTATTTATCAGATTTCGGGTTAGCGAGATTGCTTGGGAC 3068
|||||||||||| ||||| || ||||||||||||||||||||||| ||||||||| ||||
Sbjct 2516 CCTAGATGATGATTGCAACGCATATTTATCAGATTTCGGGTTAGCAAGATTGCTTAGGAC 2575
Query 3069 ATCGGAAACGCACGCAACAACTGGTGTGGCGGGTACGTTTGGGTATGTAGCTCCCGAGTA 3128
||| |||||||| |||||||| |||||||| |||||||||||||||||||| || |||||
Sbjct 2576 ATCAGAAACGCATGCAACAACAGGTGTGGCAGGTACGTTTGGGTATGTAGCGCCTGAGTA 2635
Query 3129 CGCAATGACATGCAGGGTATCAGACAAAGCAGATGTATACAGCTACGGAGTGGTGCTTCT 3188
||| ||||| ||| ||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 2636 CGCCATGACTTGCCGGGTATCGGACAAAGCGGATGTCTACAGCTACGGAGTGGTGCTTCT 2695
Query 3189 AGAGCTGCTTTCGGACAAGAAAGCACTTGATCCGTCATTTGTGTCGTATGGTAATGGTTT 3248
||||||||| |||||||||||||| || |||||||| ||||| || || ||||| || ||
Sbjct 2696 AGAGCTGCTATCGGACAAGAAAGCGCTAGATCCGTCGTTTGTTTCATACGGTAACGGATT 2755
Query 3249 CAACATAGTGCAATGGGCTTGTATGTTGTTGAGACAAGGAAGGGCAAAGGAGTTTTTCAC 3308
|||||| ||||| |||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 2756 CAACATTGTGCAGTGGGCTTGTATGCTGCTGAGACAAGGACGGGCAAAGGAGTTTTTCAC 2815
Query 3309 AGCGGGATTGTGGGACGCAGGTCCGCATGATGATCTAGTAGAGGTTCTGCATTTAGCGGT 3368
|| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 2816 AGTGGGATTATGGGACGCGGGTCCGCATGATGATCTAGTAGAGGTTCTGCATTTAGCAGT 2875
Query 3369 TGTTTGTACGGTGGATTCTCTGTCGACGAGGCCGACGATGAAGCAAGTTGTAAGACGGTT 3428
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 2876 AGTTTGTACGGTGGATTCTCTATCAACGAGGCCGACGATGAAGCAAGTTGTAAGACGATT 2935
Query 3429 GAAGCAGCTACAACCTCCGTCGTGTTAGCACCTCCCTCCGCAGGATTTGATTATTATTCT 3488
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2936 AAAGCAGCTCCAGCCTCCGTCGTGTTAGCACCTCCCTCCGCAGGATTTGATTATTATTCT 2995
Query 3489 TTCTTTaaaaaaaGTTCTCTCAGTTGTAAACTT-GTATGTGTACGTAGTAGTTGT-TA-G 3545
||||| |||||||| | | | | || | ||| | ||| || | || |||| || |
Sbjct 2996 TTCTT-AAAAAAAGGT-T-T-ATTT-TGCTCTTAGC-TGTAAACTT-GT--TTGTGTAAG 3046
Query 3546 AAGAAGAAAGAGAGGTTGA-ATTTCCTATGGGTTCTCTCGAGGGTAAAAAGGACATTTGA 3604
||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||| |
Sbjct 3047 AAGAAGAAAGAGAGGTTAATATTTCCTTTGGGTTCTCTCGAGGGTAAAAAGGACATTTTA 3106
Query 3605 AAGGGGAAGCCATAGGAAGGTTGATCTCTC 3634
|| |||||||||||||||||||||||||||
Sbjct 3107 AAAGGGAAGCCATAGGAAGGTTGATCTCTC 3136
> Ahg946863 jgi|Araly1|946863|scaffold_703092.1
Length=504
Score = 466 bits (252), Expect = 5e-130
Identities = 315/346 (91%), Gaps = 2/346 (1%)
Strand=Plus/Plus
Query 2961 ATGCGTCCCACGGGTGCTTCACCGAGATGTTAAACCGAGTAACATCCTCCTAGATGATGA 3020
||| ||||||| |||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 157 ATGTGTCCCACTGGTGCTTCACCGAGATGTTAAACCAAGCAACATCCTCCTAGATGATGA 216
Query 3021 CTGCAATGCGTATTTATCAGATTTCGGGTTAGCGAGATTGCTTGGGACATCGGAAACGCA 3080
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 TTGCAACGCTTATTTATCAGATTTCGGGTTAGCGAGATTGCTTGGGACATCGGAAACGCA 276
Query 3081 CGCAACAACTGGTGTGGCGGGTACGTTTGGGTATGTAGCTCCCGAGTACGCAATGACATG 3140
||||||||| ||||||||||||||||||||||||||||| || ||||| || ||||| ||
Sbjct 277 CGCAACAACAGGTGTGGCGGGTACGTTTGGGTATGTAGCGCCTGAGTATGCCATGACTTG 336
Query 3141 CAGGGTATCAGACAAAGCAGATGTATACAGCTACGGAGTGGTGCTTCTAGAGCTGCTTTC 3200
| || |||| || ||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 337 CCGGATATCGGATAAAGCGGATGTCTACAGCTACGGAGTGGTGCTTCTAGAGCTGCTATC 396
Query 3201 GGACAAGAAAGCACTTGATCCGTCATTTGTGTCGTATGGTAATGGTTTCAACATAGTGCA 3260
|| ||||||||| || |||||||| ||||||||||||||||| || |||||||| |||||
Sbjct 397 GGTCAAGAAAGCGCTAGATCCGTCGTTTGTGTCGTATGGTAACGGATTCAACATTGTGCA 456
Query 3261 ATGGGCTTGTATGTTGTTGAGACAAGGAAGGGCA-AAGGAGTTTTT 3305
||||||||||||||||||||||||| || ||||| ||| |||||||
Sbjct 457 ATGGGCTTGTATGTTGTTGAGACAATGATGGGCAGAAG-AGTTTTT 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139024314169
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5