BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02140.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477443 jgi|Araly1|477443|fgenesh2_kg.3__144__AT3G02140.1 889 0.0
> Ahg477443 jgi|Araly1|477443|fgenesh2_kg.3__144__AT3G02140.1
Length=1162
Score = 889 bits (481), Expect = 0.0
Identities = 667/751 (89%), Gaps = 36/751 (5%)
Strand=Plus/Plus
Query 458 CCG-TGGAGGCTCAGACATGTTTCAGCTGGATCGGACGCGTTCTCTGCCGGTCGTAACGG 516
||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 416 CCGATGGAGGCTCAGACATGTTCCAGCTGGATCGTACGCGTTCTCTGCCTGTCGTAACGG 475
Query 517 AGATGGATATAGAGAAAGAG-CGGA-AGG----TG--TC-A---GAGAAGACGAGGGCAT 564
|| | || ||||| || ||| |||| ||| | | | ||||||||||||||||
Sbjct 476 AGTTCGAGATAGACAAGGAGACGGAGAGGAAAAGGAAACGACCGGAGAAGACGAGGGCAT 535
Query 565 TTATGGAATCTCCGGTTACAAACAGAGGAGCATATCTAACAAAAGATAAAAACAGAGGCC 624
||||||||| ||||||||||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct 536 TTATGGAATTTCCGGTTACAAACAGAGGAACATATCTCACAGAAGATAAAAACAGAGGCC 595
Query 625 AAGCCGTCGAAACAGAGAAGCCGAGGGCATTTCTGGAATTTAAGATTCCTCCGACCAAGG 684
||| || ||||||||||||| |||||||||||||||||||||||||||| ||| |||||
Sbjct 596 AAGTCGCCGAAACAGAGAAGGCGAGGGCATTTCTGGAATTTAAGATTCCACCGGGCAAGG 655
Query 685 AGGGAAAGAAAGAAAAAGATCGGTTGGTTGTCACTGGTCCGGTCAACGGG-AAGGGTAAA 743
|||||||| |||| |||||||| || ||||||||| |||||||||| ||| || ||||||
Sbjct 656 AGGGAAAGGAAGATAAAGATCGTTTTGTTGTCACTAGTCCGGTCAA-GGGAAATGGTAAA 714
Query 744 AATGGAAATACGGCGAAGAAGCAGAAGAATAATGTGGAAAATTCAGGAATGGAGAAGGCG 803
|||||||||||||||||| | ||||||| ||||||||| |||||||||||||||||||
Sbjct 715 AATGGAAATACGGCGAAG-A--AGAAGAAGAATGTGGAAGTTTCAGGAATGGAGAAGGCG 771
Query 804 AGGAACATTCTTGAAGACATGCCTTGTGTGTCGACGAGAGATGTCGGAGCCGACGGGAAA 863
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 772 AGGAACATTCTAGAAGACATGCCGTGTGTGTCGACGAGAGATGTCGGAGCCGACGGGAAA 831
Query 864 CGAGTGGAAGGGTTTCTTTACTGGTACGGAGGGAACAAGGAGGAGGTCAAGATAGTTTGT 923
|||||||||||||||||||| |||||||||||||| ||||||||||||| |||||| |||
Sbjct 832 CGAGTGGAAGGGTTTCTTTATTGGTACGGAGGGAAAAAGGAGGAGGTCAGGATAGTCTGT 891
Query 924 GTTTGCCACGGCAGTTTTCTTTCTCCGGCGGAATTTGTTAGGCACGGCGGAGGTACCGTC 983
|||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 892 GTTTGCCATGGTAGTTTTCTTTCTCCGGCGGAGTTTGTTAGGCACGGCGGAGGTACCGTC 951
Query 984 AGCGATGATGATGGTGGTGATGTTATGATTAACCCTCTTAGACATATTGTTGTTAAACTT 1043
||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 AGCGACGACGGTGGTGGTGATGTTATGATTAACCCTCTTAGACATATTGTTGTTAAACTT 1011
Query 1044 CCTTCTTCTTC-T---A-TC--T--AGGGATTATT-ATTTATCCCCAACTAT-TATTA-- 1090
||||||||||| | | || | |||||||||| |||||||||||||||| |||||
Sbjct 1012 CCTTCTTCTTCCTTGTAGTCGATCTAGGGATTATTTATTTATCCCCAACTATATATTATT 1071
Query 1091 -GAGCTCTCATTTTTTGTTTTCCCTAACTTTCAAAATGTAACGATGTCAAACTAATTTGA 1149
||| ||||||||||| ||||| | || ||||||| ||||||||||||||| ||||||||
Sbjct 1072 AGAGGTCTCATTTTTTTTTTTCTC-AATTTTCAAAGTGTAACGATGTCAAAATAATTTGA 1130
Query 1150 CCGACTAAACTA-GCTGAAGCATGTACATTT 1179
||||| | ||| ||||||||||||||||||
Sbjct 1131 CCGACGA--CTAAGCTGAAGCATGTACATTT 1159
Score = 652 bits (353), Expect = 0.0
Identities = 396/417 (95%), Gaps = 2/417 (0%)
Strand=Plus/Plus
Query 6 AAAATTGTTTCGTCTCTCTCAAGATTGAAAATAGAAAGTTAAGCCAAAAACGTTTCTCCC 65
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 2 AAAATTGTTTCGTCTCTCTCAAGATTGAAAATAGAAAGTTCAGCCTAAAACGTTTCTCCC 61
Query 66 TTCTCTTTCGAATTTCTCTGACTTTGATA--TTTGGTTATGGAGATGATAAGAGGCAGGG 123
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 62 TTCTCTTTCGAATTTCTCTGACTTCGATATTTTTGGTTATGGAGATGATAAGAGGCAGGG 121
Query 124 GAATCCCAAACGGCGTCGTTCAAGTACCCAATCTTTCTGCTAATAATCTCTTGCAGAAGT 183
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 122 GAATCCCAAACGGCGTCGTTCAAGTGCCGAATCTTTCTGCTAATAATCTCTTGCAGAAGT 181
Query 184 TTTTCATCGCAAGCAACCATTTTTGTCAGCGAGACTCTGAGCATGGTGAGAATCAACaag 243
|||||||||||||||||||||||||||||| ||||||||||| |||||||| || | |||
Sbjct 182 TTTTCATCGCAAGCAACCATTTTTGTCAGCTAGACTCTGAGCCTGGTGAGAGTCGAGAAG 241
Query 244 aagcgaagaagagagaagatgaagcagaagaggatgagaaagaCGTGGAGCTAACGTTAG 303
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AAGCAAAGAAGAAAGAAGATGAAGCAGAAGAGGATGAGAAAGACGTGGAGCTAACGTTAG 301
Query 304 GTCTTTCGCTTAATGGACAGTTTGGTACGGATCCGAGATCGAGAAAAAGGAGGCACTTTG 363
||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||
Sbjct 302 GTCTTTCGCTTAATGGACAGTTTGGTACGGATCCGAGATCGAGGAAAAGGAAGAACTTTG 361
Query 364 AACTGGGTCGATCTTCTTCGATACCGGAAGGTTTCGTCTTCGATGAACAAAGATCCG 420
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 362 ATCTCGGTCGATCTTCTTCGATACCGGAAGGTTTTTTCTTCGATGAACAAAGATCCG 418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5