BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02150.2
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477445 jgi|Araly1|477445|fgenesh2_kg.3__146__AT3G02150.2 1877 0.0
> Ahg477445 jgi|Araly1|477445|fgenesh2_kg.3__146__AT3G02150.2
Length=1262
Score = 1877 bits (1016), Expect = 0.0
Identities = 1177/1252 (94%), Gaps = 22/1252 (2%)
Strand=Plus/Plus
Query 45 tttttGAAAAGAAAAGTCGAATCACATACTttcttctctc-tatttctcattctctcttc 103
||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 17 TTTTTGAAAAGAAAAATCGAATCACATACTTTCTTCTCTCTTATTTCTCATTCT-TCTTC 75
Query 104 ttcATCATATTACTCATTTTATAGAACAGCAAAACCCTAGATTTCCTGTTCAAGCTCAAG 163
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 76 TTCATCATATTACTCACTTTATAGAACAGCAAAACCCTAGATTTGCTGTTCAAGCTCAAG 135
Query 164 ACCGTACAAAACTTTGGAACTC-ATATATAAAGATCTCGAGAATA-GCATTATGAATATC 221
||||||| |||||||||| ||| | |||||||||||||||| ||| ||||||||||||||
Sbjct 136 ACCGTAC-AAACTTTGGAGCTCTAGATATAAAGATCTCGAGTATAGGCATTATGAATATC 194
Query 222 GTCTCTTGGAAAGATGCAAACGACGAAGTTGCAGGCGGCGCTACGACAAGACGTGAAAGA 281
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||
Sbjct 195 GTCTCTTGGAAAGATGCAAACGACGAAGTTTCAGGCGGCGCTACCACAAGACGTGAAGGA 254
Query 282 GAAGTAAAAGAGGATCAAGAAGAAACCGAAGTCAGAGCCACCAGTGGCAAAACCGTAATT 341
|||||| |||| |||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 255 GAAGTAGAAGAAGATCAAGAAGAAGCCCAAGTCAGAGCCACCAGTGGCAAAACCGTAATT 314
Query 342 AAAAAG-CAGCCTACATCGAtctc-t--tcttcttcttc-t--tcGTGGATGAAATCCAA 394
|||||| || || || |||||||| | ||||||||||| | |||||||||||||| ||
Sbjct 315 AAAAAGCCA-CCAACCTCGATCTCTTCCTCTTCTTCTTCTTCGTCGTGGATGAAATCGAA 373
Query 395 GGATCCGAGGATTGTTAGGGTTTCACGCGCCTTTGGAGGCAAAGACCGTCACAGCAAAGT 454
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 GGATCCAAGGATTGTTAGGGTTTCACGCGCCTTTGGAGGCAAAGACCGTCACAGCAAAGT 433
Query 455 GTGTACGTTACGTGGACTACGTGACAGACGCGTGAGATTATCAGTCCCAACGGCTATTCA 514
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 434 GTGTACGTTACGTGGGTTACGTGACAGACGCGTGAGATTATCAGTCCCAACGGCCATTCA 493
Query 515 GCTCTACGATCTTCAAGAACGGCTCGGTGTTGACCAGCCTAGCAAAGCCGTTGACTGGTT 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 GCTCTACGATCTTCAAGAACGGCTCGGTGTTGACCAGCCTAGCAAAGCCGTTGACTGGTT 553
Query 575 GCTTGATGCAGCTAAAGAGGAGATCGACGAGCTACCTCCGTTACCTATCTCGCCGGAAAA 634
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 554 GCTTGATGCAGCTAAAGAGGAGATCGACGAGCTCCCTCCGTTACCTATCTCGCCGGAAAA 613
Query 635 TTTCAGCATCTTCAACCATCATCAGTCCTTCTTGAATCTTGGTCAACGGCCCGGTCAAGA 694
|||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||
Sbjct 614 TTTCAGCATCTTCAACCATCATCACTCCTTCTTGAATCTTGGTCAAAGGCCGGGTCAAGA 673
Query 695 TCCGACCCAACTCGGGTTTAAAATCAATGGATGTGTACAAAAGTCTACTACTACTAGCCG 754
|||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||
Sbjct 674 TCCGACCCAACTCGGGTTCAAAATCAATGGATGTGTAGAAGAGTCTACTACTACTAGCCG 733
Query 755 CGAAGAAAACGATAGAGAGAAAGGAGAAAACGATGTCGTTTACACAAACAATCATCATGT 814
|||| |||| ||| |||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 734 TGAAGCAAACAATAAAGAGAAAGGAGAAAACGATGTCGTTTTCGCAAACAATCATCATGT 793
Query 815 TGGGTCTTATGGAACTTATCACAACCTGGAAcatcatcatcatcatcaCCAACATTTGAG 874
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 794 TGGGTCTTATGGAACTTATCACAACATGGAACATCATCATCATCATCACCAACATTTGAG 853
Query 875 TTTACAGGCAGATTATCATAGTCATCAAC-T-A-C-A--TAGTCTTGTCCCATTTCCATC 928
||||||||| |||||||||| |||||||| | | | | |||||||||||||||||||||
Sbjct 854 TTTACAGGCGGATTATCATAATCATCAACATCAACTACATAGTCTTGTCCCATTTCCATC 913
Query 929 ACAAATTTTGGTATGTCCAATGACGACATCACCAACAACTACAACTATACAATCTTTGTT 988
||||||||||||||||||||||||||||||| ||||| | | | ||||||||||||||||
Sbjct 914 ACAAATTTTGGTATGTCCAATGACGACATCAACAACAGC-A-A-CTATACAATCTTTGTT 970
Query 989 TCCATCATCATCGTCAGCTGGTTCAGGGACTATGGAGACATTAGATCCGAGGCAAATGGT 1048
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 971 TCCATCATCGTCGTCAGCTGGTTCAGGAACTATGGAGACATTAGATCCGAGGCAAATGGT 1030
Query 1049 AAGCCATTTTCAAATGCCATTAATGGGTAATTCTTCATCTTCGTCTTCCCAAAACATTTC 1108
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1031 GAGCCATTTTCAAATGCCAATAATGGGTAATTCTTCATCTTCGTCATCCCAAAACATTTC 1090
Query 1109 GACATTATATTCGTTGTTACATGGTAGTAGTAGCAACAATGGTGGTAGAGACATTGATAA 1168
||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1091 CACATTATATTCATTGTTACATGGTAGTAATAGCAACAATGGTGGTAGAGACATCAATAA 1150
Query 1169 TCGGATGTCGTCGGTCCAATTCAACCGAACTAATAGCACTACAACGGCTAACATGTCGAG 1228
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1151 TCGGATGTCGTCGGTCCAATTCAACCGAGCTAATAGCACTACAACGGCTAATATGTCGAG 1210
Query 1229 GCATCTAGGCTCGGAGCGTTGTACAAGTAGAGGAAGTGATCACCATATGTGA 1280
|||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1211 GCATTTAGGCTCGGAGAGTAGTACAAGTAGAGGAAGTGATCACCATATGTGA 1262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53554884470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5