BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02160.1
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477446 jgi|Araly1|477446|fgenesh2_kg.3__147__AT3G02160.1 2401 0.0
> Ahg477446 jgi|Araly1|477446|fgenesh2_kg.3__147__AT3G02160.1
Length=1647
Score = 2401 bits (1300), Expect = 0.0
Identities = 1560/1680 (93%), Gaps = 39/1680 (2%)
Strand=Plus/Plus
Query 25 TCTTTTTCTTCGCCTTCTCAAATTGGATCGAAA-GTTTTAAACTTGGAGCTGGGTTTTTG 83
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1 TCTTTTTCTTCGCCTTCTCAAATTGGATCGAAAGGTTTT-AACTTGGAGCTGGGTTTTTG 59
Query 84 ATTCGCATGCGAAATTTCCTCAATTTCGTTTGTTGGTGCTTTCAATTTCACTTCTTCGCT 143
|||||||| |||||||||||||||||||||| ||||| |||||||| |||||||||| ||
Sbjct 60 ATTCGCATTCGAAATTTCCTCAATTTCGTTTCTTGGTACTTTCAATCTCACTTCTTCTCT 119
Query 144 AGCATTTTCTCTCACTGTGTTCGCCGCCGATAGCTGCCC-AAGTTGTGTCTGTTCTTCTT 202
|| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||
Sbjct 120 AGGGTTTTCTCTCACTGTGTTCGCCGCCGATAGCTGCCCGAAGTTGTGCCTG---TTCTT 176
Query 203 CCCCGGTGAATTTTCAGTGGATAAAGCTTTTTCTCCGGTGCCTAAGAGAAGACTTTCGAG 262
| ||| |||||||||||||||| ||||||||| |||||||
Sbjct 177 ---C--------TTC----------CCTTTTTCTCCGGTGCCAAAGAGAAGAATTTCGAG 215
Query 263 GGAAAGATATTGGCTTTT-GTTTTGTGTTCTGAGAGGGATACGTGTTGTGTTGGTTTTTC 321
|||||||||||| |||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct 216 GGAAAGATATTGATTTTTGGTTTTGTGTTCTCAGAGGGATGCGTGTTGTGTTGGTTTTTC 275
Query 322 ACTCAAGAGATGGTTCTACATGTTATGTTGGGTGAAGTTGTAACAAAGTTTTTGAATATG 381
| |||||| ||||||||||||| |||||||||||||||| |||||||| ||||||||||
Sbjct 276 ATTCAAGAAATGGTTCTACATGCTATGTTGGGTGAAGTTATAACAAAG--TTTGAATATG 333
Query 382 AACAATGGAGTTGGGGAAGGTGGAAGTCAGCAAAGAGAATTACATGGTAAGAGAAAGCTT 441
| |||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 334 AGCAATGGAGGTGGGGATGGTGGAAGTCAGCAAAGAGAATTACCTGGTAAGAGAAAGCTT 393
Query 442 TTCCGAGGCAATGATTTCGCTTTTTCCATAGCGAGAATGGCAGTGGCTCAGATATGCGAG 501
|||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 394 TTCCGAGGCAGTGATTTTGCGTTTTCCATAGCGAGAATGGCAGTGGCTCAGATATGCGAG 453
Query 502 AGTGTTGAGGTTAACCCGTATCAGGAATCACAGACACGTGAGGGTGTGAGGTTTAGTTCT 561
||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||
Sbjct 454 AGTGTTGAGGTTAACTCGTATCAGGAATCACAGACACGCGAGGCCGTGAGGTTTAGTTCT 513
Query 562 TTTCAAGAATCTGCTCTTGATACACTAACTGATGTTGCGGTTCAGTATATTCAGAGCATT 621
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 514 TTTCAAGAATCTGCTCTTGAAACACTAACTGATGTAGCGGTTCAGTATATCCAGAGCATT 573
Query 622 GGGAAGACTGCTCATTTGTATGCTAACTTAGCCGGTAGAGTAGATGGTAATTCTCTGGAC 681
||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 574 GGGAAGACTGCTCATTTGTATACTAACATAGCCGGTAGAGTAGATGGTCATTCTCTGGAT 633
Query 682 ATTCTTCAAGCATTAGAGGATTTGGGATCTGGTTTGGGTTTTGCTGGTGTTTCTGATACT 741
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 634 ATTGTTCAAGCATTAGAGGATTTGGGATCTGGTTTGGGTTTTGCTGGTGTTTCAGATGCT 693
Query 742 GACCATTGTCTTGCTGATTCCGGTGTAGTCAAGGATATCATTCGTTATACTGGAGAAGCA 801
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 694 GACCATTGTCTTGCTGATTCCGGTGTAGTCAAGGATATTATTCGTTATACTGGAGAAGCG 753
Query 802 GAGGAGATACCGTTTGTTTACTCTCTTCCTCGTTTCCCATTTAGTAAAGAGAAAAAACCT 861
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 GAGGAGATGCCGTTTGTTTACTCTCTTCCTCGTTTCCCATTTAGTAAAGAGAAAAAACCT 813
Query 862 GCTCCTAGTTTCTCTGAGGTTGGAGCAGAACCTCCAGATGAACACATTCCTGTTTGGCTT 921
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 814 GCTCCTAGTTTCTCTGAGGTTGGAGCAGAACCTCCAGATGAACACATTCCTATTTGGCTT 873
Query 922 CCTGCATTTCCCGAAACCGAATTGTGTGATCGATCAGAGGAAACTAATGCAGCCACAATC 981
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 874 CCTGCATTTCCCGAAACCAAATTGTGTGATCGATCAGAGGAAACTAATGCAGCCACAATC 933
Query 982 GAAGGAGAAATTCCTAGTAAAGAAAATGGTTCATCTTTACCGAGTATGCAACTTTCTTTC 1041
|||||||||||||| || |||||||| ||||||||||||||||||||||||| |||||||
Sbjct 934 GAAGGAGAAATTCCGAGGAAAGAAAACGGTTCATCTTTACCGAGTATGCAACATTCTTTC 993
Query 1042 GATGGTGGTGGTAGGTTAGAAATACATAAATCTTCAAAGGATGTTGGAGAATCAACAGAA 1101
||||||||| |||||||| |||||||||||| ||||||||||| || ||||| || ||
Sbjct 994 GATGGTGGT---AGGTTAGATATACATAAATCTCCAAAGGATGTTCGAAAATCACCAAAA 1050
Query 1102 GCAGTAGTCGAAGGTAACCTGTTTCTAACTGCGCCTCTTCGATTTGTGGAGAAAAATGTG 1161
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1051 GCAGTAGTCGAAGGTAACCCGTTTCTAACTGCGCCTCTTCGAATTGTGGAGAAAAATGTG 1110
Query 1162 TCACCTGTGGTCCGCCCTTTGGAGCTTTCAAATGAAGTTGTTAGGACCAACCACGTTCCT 1221
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1111 TCACCTGTGGTCCGCCCTTTGGAGATTTCAAATGAAGTTGTTAGGACCAACCACGTTGCT 1170
Query 1222 GATAAGCATGTGAGGAACAACCATCACATCCCAATTCTTGAGGCATCTGCTCCATCGGAT 1281
||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1171 GATAAGCATATGAGGAACAACCATCACATCCCAGTTCTTGAGGCATCTGCTTCATCGGAT 1230
Query 1282 AAAATCAACAACAAGAACTGGTTAGCT-ATATCAAAGGATGTAGAGAAGGTAGATGTTGC 1340
||||||||||||||||||||||||||| | ||| |||||| |||||||| |||||||||
Sbjct 1231 AAAATCAACAACAAGAACTGGTTAGCTGA-ATCCGAGGATGGAGAGAAGGAAGATGTTGC 1289
Query 1341 AAGAAAAGAACTAACTTTGGTACGTTTCAAGATAGGGACTACAAAAAGATCTATGTGTTT 1400
||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1290 AAGAAAACAACGAACTTTGGTACGTTTCAAGATTGGGACTACAAAAAGATCTACGTGTTT 1349
Query 1401 GGCAAAAAATCGGAGCTTCCAGGAAGAGGGTTGGTTTCAAGAAGGTGAAGACAAGAGGGA 1460
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1350 GGCAAAAAGTCGGAGCTTCCAGGAAGAGGGTTGGTTTCAAGAAAATGAAGACAAGAGGGA 1409
Query 1461 GAAGACGTCAGAAATCAAAGAAAAGCGTGAAAGAATTGACTCGCAATTGTCAACTCAGAT 1520
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1410 GAAGAAGTCAGAAATCAAAGAAAAGCGCGAAAGAATTGACTCGCAATTGTCAACTCAGAT 1469
Query 1521 GTAAAATAGGTATTATGTCATTTTAGAATTTGCAGACAAAATAGCTTTGCATCCTGAGTT 1580
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1470 GTAAAATAGGTATTATGTCATTTTAGAATTTGCAAACAAAATAGCTTTGCATCCTGAGTT 1529
Query 1581 TAGTGATCGTTTGCAACTGGAATACGTTACTTTTTAGGGTAAGAAATGTTTACTAATTCA 1640
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1530 TAGTGATCGTTTGCAACTGGAATACGTTACTTTTTAGGGTAAGAGATTTTTACTAATTCA 1589
Query 1641 AAACGATGGAGAAAT--AGATGGTTGTTTGGCATTTAACTTGATTTGCAGTGAAATATTA 1698
||| ||||||||||| ||| ||||||||||| | ||||||||||||||||||||||||
Sbjct 1590 AAATGATGGAGAAATGTAGAAGGTTGTTTGGCCT--AACTTGATTTGCAGTGAAATATTA 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63763070130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5