BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G02180.1

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477449 jgi|Araly1|477449|fgenesh2_kg.3__150__AT3G02180.1          933    0.0  


> Ahg477449 jgi|Araly1|477449|fgenesh2_kg.3__150__AT3G02180.1
Length=574

 Score =  933 bits (505),  Expect = 0.0
 Identities = 555/578 (96%), Gaps = 7/578 (1%)
 Strand=Plus/Plus

Query  10   TTCCATCTGTTTCTCTTCCTTGATTAT-CGGCCAATCATagaacaagaagtagagaaagc  68
            ||||||||||||||||||||||||| | ||||||||| ||||||||||||||| |  |||
Sbjct  1    TTCCATCTGTTTCTCTTCCTTGATT-TGCGGCCAATCGTAGAACAAGAAGTAGTG--AGC  57

Query  69   agaagatacactacagagacagagagagatcttgacaagaTGGGTAAAGCAAGAGGAGTG  128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  58   AGAAGATACACTACAGAGACAGAGAGAGATCTTGACAAGATGGGTAAAGCAAGAGGAGTG  117

Query  129  AACAATGGCGTGAATGAAAGTTCTCTCGGTTATCTTTTTGGTTCCGGCCAGCCTTCTTCC  188
            |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  118  AACAATGGTGTTAATGAAAGTTCTCTCGGTTATCTCTTTGGTTCCGGCCAGCCTTCTTCC  177

Query  189  GCTGCTGCTGCCACAATGGGGACTACTACTACTACAACCACCACAACTACCACCGATGGG  248
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || 
Sbjct  178  GCTGCTGCTGCCACAATGGGGACTACTACTACAACAACCACCACAACTACCACCGACGGA  237

Query  249  ACCGGAGGCAGACCGATAACCACCACGACGACCACAGTCACTGATAACAAGAAGACATCT  308
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  ACCGGAGGGAGACCGATAACCACCACGACGACCACAGTCACTGATAACAAGAAGACATCT  297

Query  309  GCAGGTGTTAGAGGAAGTCCTAATAATTACTTCAGATCAGAAGGCCAAAACTGTGGAAAC  368
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  298  GCAGGTGTTAGAGGAAGTCCTAATAATTACTTCAGGTCAGAAGGCCAAAACTGTGGAAAC  357

Query  369  TTTCTCACGGACAGGCCATCTACTAAGGTTCATGCAGCTCCTGGTGGAGGATCTTCTCTT  428
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  358  TTTCTCACGGACAGGCCATCTACTAAGGTTCATGCAGCTCCTGGTGGTGGATCTTCTCTT  417

Query  429  GATTATCTGTTTGGAGGACCAAGTCCTGCTGGATCTGGAAACAAATGAAGTTACTTGTAG  488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  418  GATTATCTGTTTGGAGGACCAAGTCCTGCTGGATCTGGAAACAAATGAAGTTACTTGTAG  477

Query  489  tttttttCCCACTATTCAGATTCGTGTAAATCATCAAAAGTGTTGGCTTTTAT--CCCTT  546
            |||||| ||||||||||||||| ||||||||||||||| |||| |||||||||  |||||
Sbjct  478  TTTTTTCCCCACTATTCAGATTTGTGTAAATCATCAAATGTGT-GGCTTTTATATCCCTT  536

Query  547  AGTGAACCCTGTGTGATTCAATTGTGATGTTTGCCTTT  584
             ||||||| |||||||||||||||||||||||||||||
Sbjct  537  TGTGAACCATGTGTGATTCAATTGTGATGTTTGCCTTT  574



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24779896050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5