BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G02190.1

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477452 jgi|Araly1|477452|fgenesh2_kg.3__153__AT3G02190.1          571    1e-162
  Ahg932651 jgi|Araly1|932651|scaffold_400639.1                        165    2e-40 


> Ahg477452 jgi|Araly1|477452|fgenesh2_kg.3__153__AT3G02190.1
Length=406

 Score =  571 bits (309),  Expect = 1e-162
 Identities = 382/414 (92%), Gaps = 18/414 (4%)
 Strand=Plus/Plus

Query  1    GAGAAGATTAGGGTTTAAACGCTGCCGTGTTCCGCCGGATCGCCACCGTTGAAGTCAAGA  60
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1    GAGAAGATTAGGGTTTAAACGCCGCCGTGTTCCGCCGGATCGCCACCGTTGAAGTCAAGA  60

Query  61   TGCCGTCGCACAAGTCGTTCATGATCAAAAAGAAGCTAGGGAAGAAGATGAGACAGAACA  120
            ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct  61   TGCCGTCGCACAAGTCGTTCATGATTAAGAAGAAGCTAGGGAAGAAGATGAGACAGAACA  120

Query  121  GACCGATCCCTAATTGGATCCGTCTCCGTACTGATAACAAAATCAGGTACAACGCTAAGC  180
            | ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct  121  GGCCGATCCCTAATTGGATCCGTCTCCGTACCGATAACAGAATCAGGTACAACGCTAAGC  180

Query  181  GTAGGCACTGGCGCCGTACCAAGCTAGGATTCTAGAGCACTCTC-A---C-C-G---TGA  231
            |||||||||||||||||||||||||||| ||||||||| ||||| |   | | |   |||
Sbjct  181  GTAGGCACTGGCGCCGTACCAAGCTAGGGTTCTAGAGCCCTCTCGAGTTCACTGCCGTGA  240

Query  232  CTCAGATTCGTCCGAGTTTCTTAATTGCTTT-CTTGTATCGGAATTGTGGTCTTTGACCC  290
            |||||||||||||||||||| |||||| ||| ||||||||||| ||||||||||||||||
Sbjct  241  CTCAGATTCGTCCGAGTTTCCTAATTGTTTTTCTTGTATCGGAGTTGTGGTCTTTGACCC  300

Query  291  CTAAAAGTTTTAGTTTTTTGTTAAGGATTTTGTGGCTTATAGCTATGTTTAAATCTTAGA  350
            ||||| |||||||||||| ||||||||||||||||||| | |||||||||||||||||||
Sbjct  301  CTAAA-GTTTTAGTTTTT-GTTAAGGATTTTGTGGCTT-T-GCTATGTTTAAATCTTAGA  356

Query  351  ACTTGAAGAAGAGTGCATGATTATGAATTATAATAGTTGAATCCTTTCTCCTAC  404
             |||| | | |  |||||||||||||||||| ||||||||||||||||||||||
Sbjct  357  -CTTGCATA-G--TGCATGATTATGAATTATGATAGTTGAATCCTTTCTCCTAC  406


> Ahg932651 jgi|Araly1|932651|scaffold_400639.1
Length=197

 Score =  165 bits (89),  Expect = 2e-40
 Identities = 138/162 (85%), Gaps = 1/162 (1%)
 Strand=Plus/Plus

Query  57   AAGATGCCGTCGCACAAGTCGTTCATGATCAAAAAGAAGCTAGGGAAGAAGATGAGACAG  116
            ||||||||||||||||||||||||||||| || ||||| |||| |||||| ||||| || 
Sbjct  18   AAGATGCCGTCGCACAAGTCGTTCATGATTAAGAAGAAACTAGCGAAGAAAATGAGGCAA  77

Query  117  AACAGACCGATCCCTAATTGGATCCGTCTCCGTACTGATAACAAAATCAGGTACAACGCT  176
            ||||| || || ||| | ||||| ||||| ||||| || ||||  ||||||||||| |||
Sbjct  78   AACAGGCCTATTCCTCACTGGATTCGTCTTCGTACCGACAACACCATCAGGTACAATGCT  137

Query  177  AAGCGTAGGCACTGGCGCCGTACCAAGCTAGGATTCTA-GAG  217
            ||||||||||| |||||| | |||||||| |||||||| |||
Sbjct  138  AAGCGTAGGCATTGGCGCAGAACCAAGCTTGGATTCTAAGAG  179



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14499123820


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5