BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02200.2
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927697 jgi|Araly1|927697|scaffold_300154.1 2034 0.0
Ahg488406 jgi|Araly1|488406|fgenesh2_kg.6__1540__AT5G15610.2 1153 0.0
> Ahg927697 jgi|Araly1|927697|scaffold_300154.1
Length=1296
Score = 2034 bits (1101), Expect = 0.0
Identities = 1233/1298 (95%), Gaps = 4/1298 (0%)
Strand=Plus/Plus
Query 79 TTCGAAACCGGAGCTAAGCTATGACGACGATTGTTCCCACCTCCGAAGAAAATCCCTTTC 138
||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||
Sbjct 1 TTCGAAACCGGAGCTAAGCTATGACGACGATCGTTCCCACTTCCGAAGAAGATCCCTTTC 60
Query 139 TCGCTGTTGTCCGATTCACTTCCCAGCTCGCCTGGGCCGATGCTGGTCCCGAGGCAGCAG 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 TCGCTGTTGTCCGATTCACTTCCCAGCTCGCCTGGGCCGATGCTGGTCCCGAGGCTGCAG 120
Query 199 AGCCAGAAATTACCAGGCTCTGTAGGGAGGCTGAGGAGTCAAT-GGTAGCAGAGAAGTGG 257
||||||||||||||||||| ||||||||||||||||||||||| || | ||||||||||
Sbjct 121 AGCCAGAAATTACCAGGCTATGTAGGGAGGCTGAGGAGTCAATAGG-AAAAGAGAAGTGG 179
Query 258 CTTGAATTGTCTTCGTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAG 317
|| ||||||||| |||| ||||| |||||||||||||||||||| || |||||| |||||
Sbjct 180 CTGGAATTGTCTACGTTGATGGTAACTTCAGCTGAATTGGTATCATCCAAGATACCTGAG 239
Query 318 AAAGATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATG-CGAAAAGCCC 376
||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 240 AAAGATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAAAGTTG-AAAGCCC 298
Query 377 TGAGCAAGTCCTTGAAATGGTGAAAGCTATAGCTTCCAAGGTTGCTCAACAACCCAGTGA 436
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 299 TGAGGAAGTCCTTGAAATTGTGAAAGCTATAGCTTCCAAGGTTGCTCAACAACCGAGTGA 358
Query 437 CAAAGCTTCACTTCGTTTGAAGATCCTCTTCAATCTCTATAACCTGGTTGACCACCCGTA 496
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 359 CAAAGCTTCACTTCGTTTGAAGATCCTCTTTAATCTCTATAACCTGGTGGACCATCCGTA 418
Query 497 TGCTCGATTTCAAGTATACATGAAAGCTCTTACACTAGCTGTTGATGGGAAGGTTACTGA 556
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 419 TGCTCGTTTTCAAGTATACATGAAAGCTCTTACACTAGCTGTCGATGGGAAGGTTACTGA 478
Query 557 GTACATAGTTTCTTCTTTTAAGAAGATCGATAACTTTCTGAAAGAGTGGAATATTGACAT 616
||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||
Sbjct 479 GTACATAGTTTCTTCTTTTAAGAAGGTCGATAACTTCCTTAAAGAGTGGAATATTGACAT 538
Query 617 TAAAGATCAGAGGGAACTCTTTCTTGCCATTGCTAATGTGCTGAAAGAAAACAAAAGCTT 676
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 539 TAAGGATCAGAGGGAACTCTTTCTTGCCATTGCCAATGTGCTGAAAGAAAACAAAAGCTT 598
Query 677 GGTGAATGAATCCCTTAAGTTCTTGACGAAGTACCTAGCAACTTTCTCCAATGAGGATGC 736
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 599 GGTGAATGAATCCCTTAAGTTCTTGACGAAGTACCTAGCAACTTTCTCCAATGAGGATAC 658
Query 737 TCAGGTCCTGGATGAAGCCAAGGAGGAGGCTGTGCGTGCAGTTATCGAATTTGTCAAAGC 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCAGGTCCTGGATGAAGCCAAGGAGGAGGCTGTGCGTGCAGTTATCGAATTTGTCAAAGC 718
Query 797 TTCCAGTATTTTCCAGTGTGATTTATTGGACTTGCCAGCCGTAGCACAATTGGAAAAGGA 856
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTCCACTATTTTTCAGTGTGATTTATTGGACTTGCCAGCCGTAGCACAATTGGAAAAGGA 778
Query 857 TGCTAAATATGCACCTGTTTACCAACTTCTGAAGATTTTTCTTACTCAGAGGTTAAATGC 916
|||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 779 TGCTAAATATGCTCCGGTTTACCAGCTTCTGAAGATCTTTCTTACTCAGAGACTAAATGC 838
Query 917 CTACACGGAATTCCAAAATGCAAATTCGGGATTTCTGCAAAGCTATGGACTTTCCAATGA 976
||||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||||
Sbjct 839 CTACACGGAATTCCAAAATGCAAATCCGGAATTTCTGCAAAGCTATGGACTTGCTGATGA 898
Query 977 AGATTGTGTTACGAAGATGAGGTTGTTGTCACTAGTGGATTTGGCCTCAGATGAATCTGG 1036
|||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 899 AGATTGTGTTTCGAAGATGAGATTGTTGTCACTAGTGGACTTGGCCTCAGATGAATCTGG 958
Query 1037 CAAAATACCTTACACCTCGATTAAAGACACTCTTCAGGTAAATGAACAGGATGTCGAGTT 1096
||||||||||||| |||| ||||||||| ||||||||||||||||| | ||||| |||||
Sbjct 959 CAAAATACCTTACGCCTCAATTAAAGACGCTCTTCAGGTAAATGAAGAAGATGTTGAGTT 1018
Query 1097 ATGGATCGTGAAGGCAATAACTGCAAAACTGATTGAGTGTAAGATGGATCAGATGAACCA 1156
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1019 ATGGATCGTGAAGGCAATAACTGCAAAATTGATTGATTGTAAGATGGATCAGATGAACCA 1078
Query 1157 AGTTTTAATTGTCAGCCGCTCTTCCGAACGTGAATTTGGGACAAAGCAATGGCAATCTCT 1216
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AGTTGTAATTGTCAGCCGCTCTTCCGAACGTGAATTTGGGACAAAGCAATGGCAATCTCT 1138
Query 1217 CCGAACAAAGCTTGCGACTTGGAAGGACAACATTTCAAGTATCATAACTACCATCGAATC 1276
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1139 CCGAACAAAGCTTGCGACTTGGAAGGACAACATTTCAAACATCATAACTACAATCGAATC 1198
Query 1277 GAATAAGGTAACGGAGGAAGGTTCTCAGGCATCATCATCATCTGCTGCAGCTATTCAAGG 1336
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1199 AAATAAGGTAACCGAGGAAGGTTCTCAGGCATCATCATCATCTGCTGCAGCAATTCAAGG 1258
Query 1337 CTTGAGTGTTCGTTGAAAAAGCTATCAAGAAAAACCGT 1374
||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CTTGAGTGTTCGTTGAAAAAGCTATCAAGAAAAACCGT 1296
> Ahg488406 jgi|Araly1|488406|fgenesh2_kg.6__1540__AT5G15610.2
Length=1347
Score = 1153 bits (624), Expect = 0.0
Identities = 1038/1235 (84%), Gaps = 40/1235 (3%)
Strand=Plus/Plus
Query 99 ATGACGACGATTGTTCCCACCTCCGAAGAAAATCCCTT-TCTCGCTGTTGTCCGATTCAC 157
|||||||||||||||||||||||||||| | || |||| |||||| |||| || |||||
Sbjct 41 ATGACGACGATTGTTCCCACCTCCGAAGTAGAT-CCTTATCTCGCCATTGTTCGGTTCAC 99
Query 158 TTCCCAGCTCGCCTGGGCCGATGCTGGTCCCGAGGCAGCAGAGCCAGAAATTACCAGGCT 217
||||||||| |||||||| |||||||||||||||| |||||||| ||| || |||||||
Sbjct 100 TTCCCAGCTTGCCTGGGCAGATGCTGGTCCCGAGGTTGCAGAGCCTGAAGTTTCCAGGCT 159
Query 218 CTGTAGGGAGGCTGAGGA-GTCAATGGTAGCA-GAGAAGTGGCTTGAATTGTCTTCGTTA 275
|||||||| || ||||| || || ||| | | ||||||||| || ||| | |||||
Sbjct 160 ATGTAGGGAAGCAGAGGATGT-TATAATAG-ATGGGAAGTGGCTGGATTTGGCAACGTTA 217
Query 276 ATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGATCTTGAGTGTACC 335
||||| ||||||||||| |||||||| || ||||| |||||||||||||||||||||||
Sbjct 218 ATGGTAACTTCAGCTGACTTGGTATCATCCAAGATCCCTGAGAAAGATCTTGAGTGTACC 277
Query 336 TACACCATCATTTGCAGCATTGTCAAGAATGCGAAAAGCCCTGAGCAAGTCCTTGAAATG 395
|||||||| ||||||||| |||||||||||| || ||| |||||| |||||||||||||
Sbjct 278 TACACCATAATTTGCAGCCTTGTCAAGAATGTGACAAGTCCTGAGGAAGTCCTTGAAATT 337
Query 396 GTGAAAGCTATAGCTTCCAAGGTTGCTCAACAACCCAGTGACAAAGCTTCACTT-CGTTT 454
||||||||||||||||| ||||||| |||||| || | ||||||||||||| || |||||
Sbjct 338 GTGAAAGCTATAGCTTCGAAGGTTGTTCAACAGCCGAATGACAAAGCTTCA-TTGCGTTT 396
Query 455 GAAGATCCTCTTCAATCTCTATAACCTGGTTGACCACCCGTATGCTCGATTTCAAGTATA 514
||| |||||||||| ||| ||||| ||||| |||||||| ||||||| |||||||||||
Sbjct 397 GAAAATCCTCTTCAGTCTATATAATCTGGTAGACCACCCAAATGCTCGTTTTCAAGTATA 456
Query 515 CATGAAAGCTCT-TACACTAGCTGTTGATGGGAAGGTTACTGAGTACATAGTTTCTTCTT 573
|||||||||||| | ||| ||||| | ||||||||||| ||||| || || |||| |
Sbjct 457 CATGAAAGCTCTGGA-ACTGGCTGTAAACGGGAAGGTTACCGAGTATATTGTGCCTTCCT 515
Query 574 TTAAGAAGATCGATAACTTTC-TGAAAGAGTGGAATATTGACATTAAAGATCAGAGGGAA 632
||||||| || || | | ||| ||||||||||||| |||||||| ||||||||| | |||
Sbjct 516 TTAAGAAAATTGACAGC-TTCTTGAAAGAGTGGAACATTGACATCAAAGATCAGCGCGAA 574
Query 633 CTCTTTCTTGCCATTGCTAATGTGCTGAAAGAAAACAAAAGCTTGGTGAATGAATCCCTT 692
| ||||||||||||||||| ||||||| |||||| ||||| |||| ||| |||||||||
Sbjct 575 GTATTTCTTGCCATTGCTAAAGTGCTGAGAGAAAATAAAAGTTTGGCGAAAGAATCCCTT 634
Query 693 AAGTTCT-TGACGAAGTACCTAGCAACTTTCTCCAATGAGGATGCTCAGGTCCTGGA-TG 750
|||| | |||| || || | ||||||||||||||||| ||| | |||||||| || ||
Sbjct 635 CAGTT-TGTGACAAAATATTTGGCAACTTTCTCCAATGAAGATACCCAGGTCCT-GAGTG 692
Query 751 AAGCCAAGGAGGAGGCTGTGCGTGCAGTTATCGAATTTGTCAAAGCTTCCAGTAT-TTTC 809
||||||||||||| ||||| || || ||||| ||||||||||| ||| ||||||| |||
Sbjct 693 AAGCCAAGGAGGAAGCTGTACGAGCTGTTATTGAATTTGTCAAGGCTCCCAGTATATTT- 751
Query 810 CAGTGTGATTTATTGGACTTGCCAGCCGTAGCACAATTGGAAAAGGATGCTAAAT-ATGC 868
|||||||||||||| ||| |||||||||| ||||||||||| |||||| || ||| ||||
Sbjct 752 CAGTGTGATTTATTAGACATGCCAGCCGTTGCACAATTGGAGAAGGATCCT-AATAATGC 810
Query 869 ACCTGTTTACCAACTTCTGAAGATTTTTCTTACTCAGAGGTTAAATGCCTACACGGAATT 928
||| |||||||| || |||||||||||| ||||||||||| | |||| |||| ||||||
Sbjct 811 ACCAGTTTACCAGCTACTGAAGATTTTTTTTACTCAGAGGCTGGATGCATACATGGAATT 870
Query 929 CCAAAATGCAAATTCGGGATTTCTGCAAAGCTATGGACTT-TCCAATGAAGATTGTGTTA 987
||||||||| ||||| ||||||||||||| ||| || ||| | | | | ||| |||| ||
Sbjct 871 CCAAAATGCGAATTCAGGATTTCTGCAAACCTACGGTCTTGT-CGAGGCAGACTGTG-TA 928
Query 988 -CGAAGATGAGGTTGTTGTCACTAGTGGATTTGGCCTCAGATGAATCTGGCAAAATACCT 1046
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 GCAAAGATGAGATTGTTGTCACTAGTGGATTTGGCCTCAGATGAATCTGGCAAAATACCG 988
Query 1047 TACACCTCGATTAAAGACA-CTCTT-CAGGTAAATGAAC-AGGATGTCGAGTTATGGATC 1103
|| |||||| || || | | ||| ||||||||||| | |||| || || || ||| |
Sbjct 989 TATGTCTCGATCAA-GAAAAC-CTTACAGGTAAATGA-CGAGGAGGTTGAATTGTGGGTG 1045
Query 1104 GTGAAGGCAATAACTGCAAAACTGATTGAGTGTAAGATGGATCAGATGAACCAAGTTTTA 1163
|| |||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||
Sbjct 1046 GTTAAGGCAATAACTGCAAAATTGGTTGATTGTAAGATGGATCAGATGAACCAAGTTGTA 1105
Query 1164 ATTGTCAGCCGCTCTTCCGAACGTGAATTTGGGACAAA-GCAATGGCAATCTCTCCGAAC 1222
||||||||||||| | |||| ||||||||||| ||||| ||||||||| ||||| | |||
Sbjct 1106 ATTGTCAGCCGCTGTGCCGAGCGTGAATTTGG-ACAAAAGCAATGGCAGTCTCTTCAAAC 1164
Query 1223 AAAGCTTGC-GACTTGGAAGGACAACATTTC-AA-GTA-TCATAACTACCATCGAATCGA 1278
||||||||| | ||||| |||||| || || ||| ||| || | || ||| |||
Sbjct 1165 AAAGCTTGCAG-CTTGGCGGGACAATGTTAGGAATGTAATCAGCAC-A--ATAGAAGCGA 1220
Query 1279 ATAAGGTAACGGAGGAAGGTTCTCAGGCATCATCA 1313
| |||| ||| ||||||||| ||||| ||||||||
Sbjct 1221 ACAAGGCAACAGAGGAAGGTACTCAGACATCATCA 1255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59801684650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5