BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02210.1
Length=1684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477455 jgi|Araly1|477455|fgenesh2_kg.3__156__AT3G02210.1 2455 0.0
> Ahg477455 jgi|Araly1|477455|fgenesh2_kg.3__156__AT3G02210.1
Length=1630
Score = 2455 bits (1329), Expect = 0.0
Identities = 1543/1640 (94%), Gaps = 39/1640 (2%)
Strand=Plus/Plus
Query 62 TTTC-TGTATATTACGTCGAGCTTCTTC-AGTCTTCATCCTTGTCTTGTCACTTGTCAGA 119
|||| ||| ||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 13 TTTCTTGT-TATTACGTCGAGCTTCTTCAAG-CTTCATCCTTGTCTTGTCACTTGTCAGA 70
Query 120 GAC-AGAAGATTAAAG----AAGAAG-AG-GC-GTTTCTCTCTCtttttttGCTTCAGAA 171
||| |||||||||| |||||| || | ||||||||||| || ||| ||||||||
Sbjct 71 GACTTTAAGATTAAAGATCAAAGAAGAAGAACAGTTTCTCTCTC-TTCTTT-CTTCAGAA 128
Query 172 AAAATGGGGTTTTTCTTGTGttcctcttcttcaatcttcttcaagttcggaatctctata 231
||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 129 AAAAT-GGG--TTTCTTGTGTTCTTCTTCTTCAATCTTCTTCAAGTTCGGAATCTCTATA 185
Query 232 atctttctagtttctttctctGGTTTA-ACTCCTTCAGAAGCTTATGATCCTTTGGACCC 290
||||||||||||||||||||||| ||| | |||||||||||| |||||||||||||||||
Sbjct 186 ATCTTTCTAGTTTCTTTCTCTGG-TTATATTCCTTCAGAAGCATATGATCCTTTGGACCC 244
Query 291 GAGTGGGAACATTACTGTCAAATGGGATATCATAACCTGGACTGGAGATGGCTATGTGGC 350
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 GACTGGGAACATTACTATCAAATGGGATATCATAACCTGGACTGGAGATGGCTATGTGGC 304
Query 351 GACTGTAACGGTATATAATTTTCAGCAATATCGACACATTCAAGCTCCAGGTTGGACTCT 410
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 305 GACTGTAACGATATATAATTTCCAGCAATATCGACACATTCAAGCTCCAGGTTGGACTCT 364
Query 411 TGGATGGTCATGGGCAAAGAGAGAGGTTATATGGGGAATGAATGGAGGACAAACCACAGA 470
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 365 TGGATGGTCATGGGCAAAGAGAGAGGTTATATGGGGGATGAATGGAGGACAAACCACAGA 424
Query 471 ACAAGGAGATTGTTCTAAATTCAAAGGAACCATTCCTCATTGCTGTAAAAAGACACCTTC 530
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 425 ACAAGGAGATTGTTCAAAATTCAAAGGAAACATTCCTCATTGCTGTAAAAAGACACCTTC 484
Query 531 TGTTGTTGATCTCTTACCTGGATCTCCTTACAATCAGCAGATTGCTAATTGTTGCAGAGG 590
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 485 TGTTGTTGATCTCTTACCTGGAACTCCTTACAATCAGCAGATTGCTAATTGTTGCAGAGG 544
Query 591 GGGTGTGCTTAACTCGTGGGCTCAAGATCCCGCAACTGCTGTTTCCGCTTTCCAGCTTAC 650
|| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 545 AGGAGTGCTCAACTCGTGGGCTCAAGATCCCGCAACCGCTGTTTCCGCTTTCCAGCTTAC 604
Query 651 TGTTGGACAAGCTGGAACCACAAATAAGACAGTTAGGGTACCTAAGAATTTCACTCTCAA 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 TGTTGGACAAGCTGGAACCACAAATAAGACAGTTAGGGTACCTAAGAATTTCACTCTCAA 664
Query 711 AGCTCCTGGACCGGGATATACTTGTAGCCCCGCGAAGATTGTAAAACCGACTAGATTCAT 770
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 665 AGCTCCTGGACCGGGATATACTTGTAGTCCCGCGAAGATTGTAAAACCGACTAGATTCAT 724
Query 771 CGGTACTGATAAACGAAGAGTTACTCAAGCATTAATGACTTGGAATGTAACTTGCACATA 830
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 725 CGGAACTGACAAACGAAGAGTTACACAAGCATTAATGACTTGGAATGTAACTTGCACATA 784
Query 831 CTCGCAGTTCTTAGCTCAGAAAACACCAACTTGCTGTGTATCTCTTTCATCGTTTTATAA 890
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 785 CTCGCAGTTCTTAGCTCAGAAAACTCCTACTTGCTGTGTATCGCTTTCATCGTTTTATAA 844
Query 891 CAAG-ACAATAGTTTCTTGTCCAACATGCTCTTGTGGATGC-AGAAACACTTCTCAGCCA 948
|| | ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 845 CA-GCACAATCGTTTCTTGTCCAACATGCTCTTGTGGATGCCA-AAACACTTCTCAGCCA 902
Query 949 GGGAATTGTGTAGACCCAAAAGGTCCACGGATAGCATCAGTCATTCCAAATCCGGGGAAG 1008
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 903 GGAAATTGTGTAGACCCAAAAGGTCCACGGATAGCATCGGTCATTCCAAATCCAGGGAAG 962
Query 1009 AACGCATATATACCGCCTCTGGTCCAATGTACAAAGCATATGTGTCCAGTTAGAATCCAC 1068
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AACGCATATATACCACCCCTGGTCCAATGTACAAAGCATATGTGTCCAGTTAGAATCCAC 1022
Query 1069 TGGCATGTGAAAGTCAACTACAAACAGTACTGGAGAGTTAAAGTCACCATCACAAATTTC 1128
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TGGCATGTGAAGGTCAACTACAAACAGTACTGGAGAGTTAAAGTCACCATCACAAATTTC 1082
Query 1129 AACTACAACATGAACTATTCACAGTGGAATCTCGTCGTGCAGCATCCGAATTTCGACAAT 1188
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1083 AACTACAACATGAACTATTCACAGTGGAATCTCGTCGTGCAGCACCCGAATTTCGACAAT 1142
Query 1189 CTAACTCAGACTTTTAGCTTCAACTATAAACCTCT-GACTCCTTATGCTTCCATAAATGA 1247
|| ||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 1143 CTCACTCAGACTTTTAGCTTCAACTATAAACC-CTTGACACCTTATGCTTCCATAAATGA 1201
Query 1248 TACTGGGATTCTCTGGGGAATAAAGTTCTACAATGATCTGTTGATGCAAGCTGGGCCATT 1307
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1202 TACTGGGATTCTCTGGGGAATAAAGTTCTACAATGATCTGTTGATGCAAGCTGGACCATT 1261
Query 1308 TGGTAATGTACAATCTGAGCTACTTTTCCAGAAAGAAGCATCAGCTTTCACATTTGAGAA 1367
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1262 TGGTAATGTACAATCTGAGCTACTTTTCCAAAAAGAAGCATCAGCTTTCACATTTGAGAA 1321
Query 1368 AGGTTGGGCGTTTCCAAGAAGAATCTATTTCAATGGAGATAACTGTGTGATGCCTCCTCC 1427
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1322 AGGTTGGGCATTTCCAAGAAGAATTTATTTCAATGGAGATAACTGTGTGATGCCTCCTCC 1381
Query 1428 TGATTCTTACCCTTGGCTGCCCAATACCGGCTCGCACAAATCAGTCGGTTCCCTGTTTGC 1487
|||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct 1382 TGATTCTTACCCTTGGCTGCCCAATACCGGCTCGCATAAATCAATCGGTTCTCTGTTTGC 1441
Query 1488 AGCAATGGCCTTGTTACTGATTGTGTTCCTACATGGAAACTTGTAAGAATCATCAAGTGT 1547
|||||| ||||||||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 1442 AGCAATCGCCTTGTTACTGACTCTGTTCCTACATGGAAACTTGTAAGAATCATTAAGTGT 1501
Query 1548 AGAAT-T--CTTCTGCTGCAGTTTTTCGAACTGATATAACCCATCAAGAGAGAGTTGGTA 1604
||||| | ||| || |||||||||| ||||||||| | | | |||| | ||||||
Sbjct 1502 AGAATGTAGCTTATGATGCAGTTTTTTGAACTGATA-A-----TGA-GAGA-A-TTGGTA 1552
Query 1605 GCTTAGTTTTTTGTGTTCTCTCTTGTCTGTCCTCTTCCTGTACAACGCTTTAATATTAGA 1664
|||||||| || |||||| ||| |||||||||||||||||||||||||||||| ||||
Sbjct 1553 GCTTAGTTCTTAGTGTTCCCTC--GTCTGTCCTCTTCCTGTACAACGCTTTAATTTTAGT 1610
Query 1665 TGGTTAACTAGATCCCCTTG 1684
| |||||||| |||||||||
Sbjct 1611 TTGTTAACTAAATCCCCTTG 1630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63153626210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5