BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02220.1
Length=923
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477457 jgi|Araly1|477457|fgenesh2_kg.3__158__AT3G02220.1 1254 0.0
> Ahg477457 jgi|Araly1|477457|fgenesh2_kg.3__158__AT3G02220.1
Length=888
Score = 1254 bits (679), Expect = 0.0
Identities = 792/845 (94%), Gaps = 13/845 (2%)
Strand=Plus/Plus
Query 66 ttttttCCGATCTAAATTCACAGCTCATCGAAAATGGGCTCACGGCAAGGACCACCGAAG 125
|||| ||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 48 TTTTCTCCGATCTACATTCACAGCTCATAGAAAATGGGCTCACGGCAGGGACCACCGAAG 107
Query 126 CATCAGAACAAATTCGCCTGGGTTCCCAAAGCCGGCGTCAAGATCAACGAAACGGAAGTC 185
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 CATCAGAACAAATTCGCCTGGGTTCCCAAAGCCGGCGTCAAGATCAACGAAACGGAAGTG 167
Query 186 GGCGGGAGATTTAGACCATTATCCGAGATTACCGGAGTTTGCTACCGATGTCGAGAGCAG 245
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 168 GGCGGGAGATTTAGACCATTATCAGAGATTACTGGAGTTTGCTATCGATGTCGAGAGCAG 227
Query 246 ATCGCCTGGAAACGCAAATACGGCAAATACAAAACCCTAACTGAAGCCACCAAATGTCAG 305
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 ATCGCTTGGAAACGCAAATACGGCAAATACAAAACCCTAACTGAAGCCACCAAATGTCAG 287
Query 306 AAGTGTACAAAGCGAAATGTTCGTCAAGCATACCATAAGTTATGCCCTGGTTGTGCCAAG 365
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 AAGTGTACTAAGCGAAATGTTCGTCAAGCATACCATAAGTTATGCCCTGGTTGTGCCAAG 347
Query 366 GAGCAAAAGGTGTGTGCAAAGTGTTGT-CAAAGTGTTGATCAAATCCTTGGAAGAGATAT 424
||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||||
Sbjct 348 GAGCAGAAGGTGTGTGCAAAGTGTTGTTCCC-GTGTTGATCAAATCATTGGAAGAGATAT 406
Query 425 TTACGAAGTAGAGGCTGAACAGAAGCTGCTTGATGAGACTATCAAGAATGCTAGGGAAAG 484
|||||| || || ||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 407 TTACGAGGTTGAAGCTGAGCAGAAGATGCTTGATGAGACTATCAAGAATGCTAGGGAAAG 466
Query 485 AGATCGAAGGACCCTATTACGTGCTATGAACAAAGATAACAAACCAAATAAATCAGATGA 544
||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 467 GGATCGAAGGACGCTATTACGTGCTATGAACAAAGATAACAAACCGAACAAATCAGATGA 526
Query 545 AGAAGCGTCAAGGAGTGATAGCAGCAAGGTTGGTGATGTGTTTCCCTCAACTTCCCTTGA 604
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 AGAAGCGACAAGGAGTGATAGCAGCAAGGTTGGTGATGTGTTTCCCTCAACTTCCCTTGA 586
Query 605 AGAATATGCAAACAAGTCCGGAAGAGTTAGCGGGATTATTGGTCATGGTAGTGTGCCTGA 664
|||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||
Sbjct 587 AGAATATGCAAACAAGTCGGGAAGAGTTAGCAGGATTATTGGTCATGGTAGTGTACCTGA 646
Query 665 TCATGCCCATGATGATG------CTAGTGGACCTGAATCAGATGAGGATGACAATG-TTG 717
||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct 647 TCATGGCCATGATGATGATGATGCTAGTGGACCTGAATCAGATGAGGATCACAATGATTG 706
Query 718 GTGATGATGAGCATGATTTGCGCGAAGACAGTGATGAAAATGAGCAATCTCAACTGCAGA 777
||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||
Sbjct 707 -TGATGATGAGCATGATTTGCGCGAAGACAGTGATGCAAATGAGCCATCTCAACTGTAGA 765
Query 778 AATAAACTCATGTTTGGTTGTACTACTGTCAATTTGG-TAGGATTGTGAGATTTTGCAAG 836
| ||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 766 AGTAAACCCATGTTTGGTTGTACTACTGTCAATTTTGATAGGATTGTGAGATTTTGCAAA 825
Query 837 ACTGTTTATTCCTGTTGTTTTGATAAAACTTTTACTTGGTCACCTGCAATGCAAGACTAG 896
|||| |||||||||||||||||||||| |||| |||| | ||||| ||||||||||||||
Sbjct 826 ACTGATTATTCCTGTTGTTTTGATAAA-CTTT-ACTTTGCCACCTACAATGCAAGACTAG 883
Query 897 CAAAG 901
|||||
Sbjct 884 CAAAG 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34234379466
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5