BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02230.1
Length=1387
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477458 jgi|Araly1|477458|fgenesh2_kg.3__159__AT3G02230.1 2379 0.0
Ahg488410 jgi|Araly1|488410|fgenesh2_kg.6__1544__AT5G15650.1 1347 0.0
Ahg926029 jgi|Araly1|926029|scaffold_201590.1 134 2e-30
Ahg942013 jgi|Araly1|942013|scaffold_602557.1 115 8e-25
> Ahg477458 jgi|Araly1|477458|fgenesh2_kg.3__159__AT3G02230.1
Length=1381
Score = 2379 bits (1288), Expect = 0.0
Identities = 1357/1389 (98%), Gaps = 10/1389 (1%)
Strand=Plus/Plus
Query 1 CCATCACCTCCGatctcaaatctcacaatcttttctctccaaattctcttctctctgaat 60
|||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||
Sbjct 1 CCATCACCTCCGATCTCAAATCTCAC-AT-ATTTCTCTCC-AATTCTCTTCTCTCTGAAT 57
Query 61 caatccaatcaTGGTTGAGCCGGCGAACACCGTTGGAATTCCGGTGAACCACATCCCATT 120
|||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 58 CAAT-CAATCATGGTTGAGCCGGCGAATACCGTTGGAATTCCGGTGAATCACATTCCATT 116
Query 121 GTTGAAGGATGAGCTCGATATCGTGATCCCCACGATCCGTAACCTCGATTTCCTGGAGAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GTTGAAGGATGAGCTCGATATCGTGATCCCCACGATCCGTAACCTCGATTTCCTGGAGAT 176
Query 181 GTGGAGGCCTTTTCTTCAGCCTTACCATCTGATTATCGTCCAAGATGGAGATCCATCGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GTGGAGGCCTTTTCTTCAGCCTTACCATCTGATTATCGTCCAAGATGGAGATCCATCGAA 236
Query 241 GACCATTGCTGTCCCTGAAGGGTTCGATTACGAACTCTACAACAGGAACGACATCAACCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GACCATTGCTGTCCCTGAAGGGTTCGATTACGAACTCTACAACAGGAACGACATCAACCG 296
Query 301 TATCCTTGGTCCTAAAGCTTCCTGCATTTCCTTCAAGGACTCTGCTTGTCGTTGCTTCGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TATCCTTGGTCCTAAAGCTTCCTGCATTTCCTTCAAGGACTCTGCTTGTCGTTGCTTCGG 356
Query 361 CTACATGGTCTCCAAGAAGAAGTACATCTTCACTATTGATGACGATTGCTTCGTTGCTAA 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 357 CTACATGGTCTCCAAGAAGAAGTACATCTTCACTATTGACGACGATTGCTTCGTTGCCAA 416
Query 421 GGATCCATCTGGAAAAGCTGTGAACGCTCTTGAGCAACACATCAAGAACCTTCTCTGCCC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGATCCATCTGGAAAAGCTGTGAACGCTCTTGAGCAACACATCAAGAACCTTCTCTGCCC 476
Query 481 ATCAACTCCATTTTTCTTCAACACCTTGTACGACCCATACCGTGAAGGTGCTGACTTCGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ATCAACTCCATTTTTCTTCAACACCTTGTACGACCCATACCGTGAAGGTGCTGACTTCGT 536
Query 541 CCGTGGATACCCTTTCAGTCTCCGTGAGGGTGTTTCCACCGCTGTTTCCCACGGTCTGTG 600
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 537 CCGTGGATACCCTTTCAGTCTCCGTGAGGGTGTTTCCACCGCTGTTTCTCACGGTCTGTG 596
Query 601 GCTCAACATCCCTGATTACGATGCCCCTACCCAACTTGTGAAGCCTAAGGAAAGGAACAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GCTCAACATCCCTGATTACGATGCCCCTACCCAACTTGTGAAGCCTAAGGAAAGGAACAC 656
Query 661 AAGGTATGTGGATGCTGTCATGACCATCCCAAAGGGAACTCTTTTCCCTATGTGTGGTAT 720
||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 657 AAGGTATGTGGATGCTGTCATGACCATCCCAAAGGGAACACTCTTCCCTATGTGTGGCAT 716
Query 721 GAACTTGGCCTTTGACCGTGAGCTCATTGGTCCGGCTATGTACTTTGGTCTCATGGGTGA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GAACTTGGCCTTTGACCGTGAGCTCATTGGTCCGGCTATGTACTTTGGTCTCATGGGTGA 776
Query 781 TGGTCAGCCTATTGGTCGCTACGACGATATGTGGGCTGGATGGTGTATCAAGGTGATCTG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGGTCAGCCTATTGGTCGCTACGACGATATGTGGGCTGGATGGTGTATCAAGGTGATCTG 836
Query 841 TGACCATTTGGGATTGGGAGTGAAGACAGGTTTGCCCTACATTTACCACAGCAAAGCCAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGACCATTTGGGATTGGGAGTGAAGACAGGTTTGCCCTACATTTACCACAGCAAAGCCAG 896
Query 901 CAACCCGTTTGTGAACTTGAAGAAGGAGTACAAGGGAATCTTCTGGCAGGAGGATATCAT 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TAACCCGTTTGTGAACTTGAAGAAGGAGTACAAGGGAATCTTCTGGCAGGAGGATATCAT 956
Query 961 TCCTTTCTTCCAGAGCGCAAAGCTCACGAAAGAAGCTGTGACAGTTCAACAATGCTACAT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TCCTTTCTTCCAGAGCGCAAAGCTCACGAAAGAAGCTGTGACAGTTCAACAATGCTACAT 1016
Query 1021 GGAGCTGTCCAAGTTGGTGAAGGAGAAGCTAAGCCCCATTGATCCTTACTTTGACAAGCT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GGAGCTGTCCAAGTTGGTGAAGGAGAAGCTAAGCCCCATTGATCCTTACTTTGACAAGCT 1076
Query 1081 TGCAGATGCTATGGTCACTTGGATTGAAGCTTGGGATGAGCTTAACCCACCCACTAAAGC 1140
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TGCAGACGCTATGGTCACCTGGATTGAAGCTTGGGATGAGCTTAACCCACCCACTAAAGC 1136
Query 1141 TTGAGCAGCaaaaaaaCCACCACCGCAGTTTTGGTTATTAGCTCAA-CATATCATCTATC 1199
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1137 TTGAGCAGCAAAAAAACCACCACCGCAGTTTTGGTTATTAGCTCAATC-TATCATCTATC 1195
Query 1200 TTCTCCgttttgtttttgttttgtcttttctcaaattttccggcgattcttcagttcgtt 1259
||||| |||||||||||||||| ||||||||||| ||||||||||||| |||||||||||
Sbjct 1196 TTCTCTGTTTTGTTTTTGTTTTATCTTTTCTCAA-TTTTCCGGCGATTATTCAGTTCGTT 1254
Query 1260 tttAAGTTGCCGGAGTTTATTTAAATAGTGAATGGTGTAGTTCTATTTATGACCGAGACA 1319
||||||| || |||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1255 TTTAAGTCGCTGGAGTTTATTCAAATAGTGA-TGGTGTAGTTCTATTTATGACCGAGACA 1313
Query 1320 ATCTCTCTTTTGAGGTTTTTCGTTTTTGTTTCAATAATAAAAA-ATCATATCCCTTAGTC 1378
||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1314 ATCTCTCCTTTGAGGTTTTTCGTTTTTGTTTCAATAATAAAATCAT-ATATCCCTTAGTC 1372
Query 1379 GTTGGTGTC 1387
||||||||
Sbjct 1373 TTTGGTGTC 1381
> Ahg488410 jgi|Araly1|488410|fgenesh2_kg.6__1544__AT5G15650.1
Length=1476
Score = 1347 bits (729), Expect = 0.0
Identities = 958/1069 (90%), Gaps = 14/1069 (1%)
Strand=Plus/Plus
Query 70 caTGGTTGAGCCGGCGAACACCGTTGGAATTCCGGTGAA-CC-ACATCCCATTGTTGAAG 127
|||||||||||||||||| || ||||| | |||||||| || || ||| ||| ||||
Sbjct 46 CATGGTTGAGCCGGCGAATACTGTTGGTCTCCCGGTGAATCCGAC-GCCC-TTGCTGAAA 103
Query 128 GATGAGCTCGATATCGTGATCCCCACGATCCGTAACCTCGATTTCCTGGAGATGTGGAGG 187
|||||||||||||||||||| || || ||| | |||||||||||||| ||||||||||||
Sbjct 104 GATGAGCTCGATATCGTGATTCCGACTATCAGAAACCTCGATTTCCTCGAGATGTGGAGG 163
Query 188 CCTTTTCTTCAGCCTTACCATCTGATTATCGTCCAAGATGGAGATCCATCGAAGACCATT 247
|||||||||||||||||||||||||| |||||||| || |||||||| ||||||| | |
Sbjct 164 CCTTTTCTTCAGCCTTACCATCTGATCATCGTCCAGGACGGAGATCCGTCGAAGAAGA-T 222
Query 248 GC-TGTCCCTGAAGGGTT-CGATTACGAACTCTACAACAGGAACGACATCAACCGTATCC 305
| |||||||||| |||| ||| ||||| |||||||||||||||||||| ||||| ||||
Sbjct 223 CCATGTCCCTGAA-GGTTACGACTACGAGCTCTACAACAGGAACGACATTAACCGGATCC 281
Query 306 TTGGTCCTAAAGCTTCCTGCATTTCCTTCAAGGACTCTGCTTGTCGTTGCTTCGGCTACA 365
|||| ||||||||||| || || ||||| ||||| ||||||||||| ||||| || ||||
Sbjct 282 TTGGACCTAAAGCTTCTTGTATCTCCTTTAAGGATTCTGCTTGTCGGTGCTTTGGGTACA 341
Query 366 TGGTCTCCAAGAAGAAGTACATCTTCACTATTGATGACGATTGCTTCGTTGCTAAGGATC 425
|||| || ||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 342 TGGTGTCTAAGAAGAAGTATATCTTCACCATTGATGACGATTGCTTCGTTGCCAAGGATC 401
Query 426 CATCTGGAAAAGCTGTGAACGCTCTTGAGCAACACATCAAGAACCTTCTCTGCCCATCAA 485
||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 402 CATCTGGCAAAGCAGTTAATGCTCTTGAGCAACACATCAAGAACCTTCTCTGCCCATCGT 461
Query 486 CTCCATTTTTCTTCAACACCTTGTACGACCCATACCGTGAAGGTGCTGACTTCGTCCGTG 545
|||| |||||||||||||||||||| || || ||||||||||||||||| ||||||||||
Sbjct 462 CTCCCTTTTTCTTCAACACCTTGTATGATCCTTACCGTGAAGGTGCTGATTTCGTCCGTG 521
Query 546 GATACCCTTTCAGTCTCCGTGAGGGTGTTTCCACCGCTGTTTCCCACGGTCTGTGGCTCA 605
|||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||
Sbjct 522 GATACCCTTTCAGTCTCCGTGAAGGTGTTTCCACTGCTGTTTCCCATGGTCTCTGGCTCA 581
Query 606 ACATCCCTGATTACGATGCCCCTACCCAACTTGTGAAGCCTAAGGAAAGGAACACAAGGT 665
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 582 ACATCCCTGACTACGATGCCCCTACCCAACTCGTGAAGCCTAAGGAGAGGAACACCAGGT 641
Query 666 ATGTGGATGCTGTCATGACCATCCCAAAGGGAACTCTTTTCCCTATGTGTGGTATGAACT 725
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 642 ATGTGGATGCTGTCATGACCATCCCAAAGGGAACACTTTTCCCAATGTGTGGTATGAACT 701
Query 726 TGGCCTTT-GACCGTGAGCTCATTGGTCCGGCTATGTACTTTGGTCTCATGGGTGATGGT 784
||| |||| |||||||| | ||||| || ||||||||||||||||||||||||||||||
Sbjct 702 TGG-CTTTCGACCGTGATTTGATTGGCCCAGCTATGTACTTTGGTCTCATGGGTGATGGT 760
Query 785 CAGCCTATTGGTCGCTACGACGATATGTGGGCTGGATGGTGTATCAAGGTGATCTGTGAC 844
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 761 CAGCCTATTGGTCGCTACGACGATATGTGGGCTGGTTGGTGCATCAAGGTGATCTGTGAC 820
Query 845 CATTTGGGATTGGGAGTGAAGACAGGTTTGCCCTACATTTACCACAGCAAAGCCAGCAAC 904
|| ||| | |||||||||||||| |||||||| || || |||||||||||||| ||||||
Sbjct 821 CACTTGAGCTTGGGAGTGAAGACCGGTTTGCCGTATATCTACCACAGCAAAGCGAGCAAC 880
Query 905 CCGTTTGTGAACTTGAAGAAGGAGTACAAGGGAATCTTCTGGCAGGAGGATATCATTCCT 964
|| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 881 CCTTTTGTGAACTTGAAGAAGGAATACAAGGGAATCTTCTGGCAGGAGGAGATCATTCCG 940
Query 965 TTCTTCCAGAGCGCAAAGCTCA-CGAAAGAAGCTGTGACAGTTCAACAATGCTACATGGA 1023
|||||||||| ||||||||| | |||||||||| || || ||||| ||||||||||| ||
Sbjct 941 TTCTTCCAGAACGCAAAGCT-ATCGAAAGAAGCAGTAACTGTTCAGCAATGCTACATTGA 999
Query 1024 GCTGTCCAAGTTGGTGAAGGAGAAGCTAAGCCCCATT-GATCCTTACTTTGACAAGCTTG 1082
||| || ||| |||||||||||||| | ||| || || || || ||||||||||||||||
Sbjct 1000 GCTCTCAAAGATGGTGAAGGAGAAGTTGAGCTCC-TTAGACCCGTACTTTGACAAGCTTG 1058
Query 1083 CAGATGCTATGGTCACTTGGATTGAAGCTTGGGATGAGCTTAACCCACC 1131
|||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct 1059 CAGACGCCATGGTTACATGGATTGAAGCTTGGGATGAGCTTAACCCACC 1107
> Ahg926029 jgi|Araly1|926029|scaffold_201590.1
Length=341
Score = 134 bits (72), Expect = 2e-30
Identities = 82/87 (94%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 746 ATTGGTCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGCTACGAC 805
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 ATTGGCCCAGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGCTACGAC 224
Query 806 GATATGTGGGCTGGATGGTGTATCAAG 832
|| ||||||||||| ||||| ||||||
Sbjct 225 GACATGTGGGCTGGTTGGTGCATCAAG 251
> Ahg942013 jgi|Araly1|942013|scaffold_602557.1
Length=421
Score = 115 bits (62), Expect = 8e-25
Identities = 72/77 (94%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 758 ATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGCTACGACGATATGTGGGCT 817
||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct 270 ATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTAGCTACGATGACATGTGGGCT 329
Query 818 GGATGGTGTATCAAGGT 834
|| ||||| ||||||||
Sbjct 330 GGTTGGTGCATCAAGGT 346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51840823445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5