BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G02242.1

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg317104 jgi|Araly1|317104|fgenesh1_pm.C_scaffold_3000120           394    2e-109


> Ahg317104 jgi|Araly1|317104|fgenesh1_pm.C_scaffold_3000120
Length=330

 Score =  394 bits (213),  Expect = 2e-109
 Identities = 300/340 (88%), Gaps = 14/340 (4%)
 Strand=Plus/Plus

Query  1    ATGAAGAAGTGGAGTTATGCGAAGTTAATGACCTCAGCTTTATTGCTTGTCTTCTTAAGT  60
            ||||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||| |
Sbjct  1    ATGAAGAAGTGGAGTTATGCGAAGTTAATGACCTCAGTTTTATTGTTTCTCTTCGTAA-T  59

Query  61   -ATTATTCTTTTGGCCTTTCATGGTGGATCAAGAGGTGACAATCATCTA-TATGATCATG  118
             ||| ||||||||||||||||||| ||||||| |||||||||||||| | |||| |||||
Sbjct  60   CATTCTTCTTTTGGCCTTTCATGGAGGATCAACAGGTGACAATCATC-AGTATGTTCATG  118

Query  119  TGGCCATCGGAACTAAGGATATCTTGATGGGACGAAAGTTAAAAGATTTGAAACCAAAAA  178
            ||||||||||| |||||||| ||  ||||||||||||||||||| ||||| |||||||||
Sbjct  119  TGGCCATCGGAGCTAAGGAT-TC--GATGGGACGAAAGTTAAAACATTTGGAACCAAAAA  175

Query  179  CTGAATCGTTGAAAATGATCAATCCCAAAAAGAAGAACGGGTTTGAGTATTCAGATCAAG  238
            ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||
Sbjct  176  CTGAATCGTTGAAAATGATCAATCCAAAAAAGACGAACGAGTTTGAGTATTCAGATCAAG  235

Query  239  TATCTAGTGATTTATCTAGACA-AGAAGTATTTGTCGATA-TGATGGCTAGGGACTACCA  296
            |||| | |||||||| |||| | |||||||||| |||||| | ||||||| |||||||| 
Sbjct  236  TATCCAATGATTTAT-TAGAAAGAGAAGTATTTTTCGATACT-ATGGCTACGGACTACCG  293

Query  297  AGGCCCAAAACCCAGAAGCAAGCCCCTCAAAAACAACTGA  336
            ||||| ||||   ||||| ||||||| ||  ||||| |||
Sbjct  294  AGGCCTAAAA---AGAAGAAAGCCCCCCATCAACAATTGA  330



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11904543768


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5