BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02250.1
Length=2608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927703 jgi|Araly1|927703|scaffold_300160.1 2597 0.0
Ahg488418 jgi|Araly1|488418|fgenesh2_kg.6__1552__AT5G15740.1 1592 0.0
> Ahg927703 jgi|Araly1|927703|scaffold_300160.1
Length=1582
Score = 2597 bits (1406), Expect = 0.0
Identities = 1517/1572 (97%), Gaps = 2/1572 (0%)
Strand=Plus/Plus
Query 677 TTTTAGAAAATGTGTAAAGCGGAGAAGTTTCTTTATCACAGGAAACTCTGGGAGATGAAG 736
||| ||||||||||||||||||| |||||||| || || |||||||||||||||||||||
Sbjct 12 TTTCAGAAAATGTGTAAAGCGGACAAGTTTCTATACCATAGGAAACTCTGGGAGATGAAG 71
Query 737 GTTAAGTTTCTAGGAGATAGTAAGATTGACAAGCTTAAGAACTCCTTGGTTTTGAGGTCT 796
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 72 GTTAAGTTTCTAGGAGATAGTAAGATTGACAAGTTTAAGAACTCTTTGGTTTTGAGGTCT 131
Query 797 CGTATGAGCTTATGGATGATTCGTGCTATGACTATATTGTTGCTATGGAGTTGCTTTGTT 856
||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 132 CGTATGAGCCTATGGATGATTCGGGCTATGACTATATTGTTGCTCTGGAGTTGCTTTGTT 191
Query 857 CATTTGGTTGCTGTGGGAGAGATGTGGGGACCTAGATTGTTGAAAGGCTGGCCTTCTTGT 916
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 CATTTGGTTGCTATGGGAGAGATGTGGGGACCTAGATTGTTGAAAGGCTGGCCTTCTTGT 251
Query 917 TTCAATCACCATGACTTCCCCATTGCTGCAGAAATGACTTCTCTTCCCATGAAAATCGCC 976
|||||||||||||| || || || |||||| |||||||||||||||||||||||||||||
Sbjct 252 TTCAATCACCATGATTTACCAATGGCTGCACAAATGACTTCTCTTCCCATGAAAATCGCC 311
Query 977 CTCCCACCTAAAAGGATATATCAGAACAATGGCTATCTTATGGTTTCTTGCAATGGAGGA 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 CTCCCACCTAAAAGGATATATCAGAACAATGGCTATCTTATGGTTTCTTGCAATGGAGGA 371
Query 1037 CTCAACCAAATGCGAGCAGCGATATGTGATATGGTCACTATTGCAAGATACATGAATGTC 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 CTCAACCAAATGCGAGCAGCGATATGTGATATGGTCACTATTGCAAGATACATGAATGTC 431
Query 1097 ACACTTATTGTCCCAGAGCTTGACAAGACCTCGTTTTGGAATGATCCAAGTGAGTTCAAA 1156
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 432 ACACTTATTGTGCCAGAGCTTGACAAGACCTCCTTTTGGAATGATCCAAGTGAGTTCAAA 491
Query 1157 GACATATTCGACGTGGACCATTTCATAAGTTCTTTAAGGGACGAGGTTCGTATACTAAAA 1216
||||||||||||||||| || ||||||||||||||||| || |||||||||||||| |||
Sbjct 492 GACATATTCGACGTGGATCACTTCATAAGTTCTTTAAGAGATGAGGTTCGTATACTCAAA 551
Query 1217 GAGCTTCCTCCAAGGCTTAAGAGAAGGGTTAGGCTCGGGCTGTACCACACCATGCCTCCT 1276
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 552 GAGCTTCCTCCAAGGCTTAAGAGAAGGGTTAGGCTCGGGATGTACCACACCATGCCTCCT 611
Query 1277 ATTAGCTGGTCCAACATGTCCTACTACCAAGACCAGATTCTTCCGCTGGTGAAGAAGTAT 1336
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 612 ATTAGCTGGTCCAACATGTCCTATTACCAAGACCAGATTCTTCCGCTGGTGAAGAAGCAT 671
Query 1337 AAGGTGGTACATCTGAACAAGACCGATACTCGACTTGCTAATAACGAACTACCTGTTGAG 1396
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 672 AAGGTCGTACATCTGAACAAGACCGATACTCGACTTGCTAATAACGAACTGCCTGTTGAG 731
Query 1397 ATTCAGAAGCTGCGATGCCGAGCAAATTTCAATGGGCTTAGGTTTACTCCAAAGATTGAG 1456
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 732 ATTCAGAAGCTCCGATGCCGAGCAAATTTCAACGGGCTTAGGTTTACTCCAAAGATTGAG 791
Query 1457 GAATTGGGTAGAAGAGTAGTCAAGATTCTCAGGGAGAAAGGTCCCTTTCTAGTTCTGCAT 1516
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 792 GAATTGGGTAGAAGAGTAGTCAAGATTCTGAGGGAGAAAGGTCCCTTTCTAGTTCTGCAT 851
Query 1517 CTCAGATACGAAATGGATATGTTGGCATTTTCTGGTTGCTCACATGGTTGCAACCGCTAC 1576
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 852 CTCCGATACGAAATGGATATGTTGGCATTTTCTGGTTGCTCACATGGTTGTAACCGCTAC 911
Query 1577 GAAGAGGAAGAACTAACAAGAATGAGATATGCTTATCCGTGGTGGAAAGAGAAAGTAATA 1636
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 GAAGAGGAAGAACTAACGAGAATGAGATATGCTTATCCGTGGTGGAAAGAGAAAGTAATA 971
Query 1637 GACTCCGAGTTGAAGAGGAAAGAAGGTCTTTGCCCATTGACTCCTGAAGAAACAGCTCTT 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 GACTCCGAGTTGAAGAGGAAAGAAGGTCTTTGCCCATTGACTCCTGAAGAAACAGCTCTT 1031
Query 1697 ACGCTATCTGCATTGGGTATTGACCGAAATGTTCAGATTTACATAGCTGCAGGAGAAATA 1756
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1032 ACGCTATCTGCATTGGGTATTGACCGTAATGTTCAGATTTACATAGCTGCCGGAGAAATA 1091
Query 1757 TACGGTGGTAAAAGGCGGTTAAAGGCTTTAACAGATGTTTTTCCAAATGTGGTGAGGAAA 1816
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1092 TATGGTGGTAAAAGGCGGTTAAAGGCTTTGACAGATGTTTTTCCAAATGTGGTGAGGAAA 1151
Query 1817 GAAACTCTACTCGATTCTTCTGATTTGAGTTTTTGTAAAAACCATTCTTCTCAAATGGCT 1876
||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||
Sbjct 1152 GAAACTCTACTCGATTCCTCTGATTTGAGTTTTTGTCAGAACCATTCTTCTCAAATGGCT 1211
Query 1877 GCTCTTGATTACCTTATCTCTCTCGAAAGTGATATATTCGTTCCTACTTATTACGGAAAC 1936
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1212 GCTCTTGATTACCTTATCTCTCTCGAAAGTGATATATTCGTTCCTACATATTATGGGAAC 1271
Query 1937 ATGGCGAAAGTCGTGGAAGGTCATCGCAGGTTCTTGGGGTTCAAGAAGACAATTGAGCTA 1996
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1272 ATGGCGAAAGTCGTGGAAGGTCATCGCAGGTTCTTGGGGTTCAAGAAGACGATTGAGCTA 1331
Query 1997 AACCGGAAGTTGTTGGTTAAGCTGATAGATGAATATTATGAAGGATTGTTGAGCTGGGAA 2056
||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1332 AACCGGAAGCTCTTGGTTAAGCTAATAGATGAATACTATGAAGGATTGTTGAGCTGGGAA 1391
Query 2057 GTGTTTTCAACCACGGTTAAGGCCTTTCACGCTACACGAATGGGAGGGCCAAAGAGACGG 2116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 GTGTTTTCAACCACGGTTAAGGCCTTTCACGCTACACGAATGGGAGGGCCAAAGAGACGG 1451
Query 2117 CTAGTGATTCCAAATAAACCGAAAGAAGAAGACTACTTCTATGCTAATCCATATGAATGT 2176
|| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1452 CTTGTGATTCCAAATAGACCGAAAGAAGAAGACTACTTCTATGCCAATCCATATGAATGT 1511
Query 2177 CTTCAGCTATTACATGAGAATAATGGCAATTCACTAGAAGAAACC-TAATGAACAGATCC 2235
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1512 CTTCAGCTATTACATGAGAATAATGGCAATTCACTAGAAGAAACCATA-TGAACAGATCC 1570
Query 2236 TCCAATGTTGTC 2247
|||| |||||||
Sbjct 1571 TCCATTGTTGTC 1582
> Ahg488418 jgi|Araly1|488418|fgenesh2_kg.6__1552__AT5G15740.1
Length=2437
Score = 1592 bits (862), Expect = 0.0
Identities = 1315/1534 (86%), Gaps = 29/1534 (2%)
Strand=Plus/Plus
Query 675 GATTTT-AGAAAATGTGTAAAGCGGAGAAGTTTCTTTATCACAGGAAACTCTGGGAGATG 733
|||||| | |||||||||||| ||| ||||||||||| ||||||||||| |||||||||
Sbjct 636 GATTTTGAAAAAATGTGTAAAATGGACAAGTTTCTTTACCACAGGAAACTATGGGAGATG 695
Query 734 AAGGTTAAG-TTTCTAGGAGATAG-TAAGATTGACAAGCTTAAGAACTCCTTGGTTTTGA 791
|| |||||| ||| ||||||| || ||| |||| || || |||||||| || |||| ||
Sbjct 696 AATGTTAAGCTTT-TAGGAGAGAGCAAAG-TTGAGAAACTCAAGAACTCTTTTGTTTCGA 753
Query 792 GGTCTCGTATGAGCTTATGGATGATTCGTGCTATGACTATATTGTTGCTATGGAGTTGCT 851
|| ||||||||||| |||||||||| |||||| | ||| |||||||||| ||||| || |
Sbjct 754 GGCCTCGTATGAGCCTATGGATGATACGTGCTGTTACTGTATTGTTGCTTTGGAGCTG-T 812
Query 852 TT-GTTCATTTGGTTGCTGTGGGAGAGATGTGGGGACCTAGATTGTTGAAAGGCTGGCCT 910
|| ||||||||| | ||| ||||||| ||||||||||| |||||||| ||||| ||||||
Sbjct 813 TTCGTTCATTTGATGGCTTTGGGAGAAATGTGGGGACCAAGATTGTTTAAAGGTTGGCCT 872
Query 911 TCTTGTTTCAATCACCATG-ACTTCCCCATTGCTGCAGAAATGACTTCTCTTCCCA-TGA 968
||||||||||||||||||| || | ||| ||| ||||| ||||| |||||||||| | |
Sbjct 873 TCTTGTTTCAATCACCATGAAC-TGTCCACTGCCGCAGAGATGACGTCTCTTCCCACT-A 930
Query 969 AAATCGCCCTCCCACCTAAAAGGATATATCAGAACAATGGCTATCTTATGGTTTCTTGCA 1028
||||||| || |||||||||||| ||||| ||||||||| |||||| ||||||| ||||
Sbjct 931 AAATCGCTCTTCCACCTAAAAGGGTATATGTGAACAATGGTTATCTTGTGGTTTCCTGCA 990
Query 1029 ATGGAGGACTCAACCAAATGCGAGCAGCGATATGTGATATGGTCACTATTGCAAGATACA 1088
|||||||||| || |||||||||||||| ||||| |||||||| ||| |||||||||||
Sbjct 991 ATGGAGGACTTAATCAAATGCGAGCAGCTATATGCGATATGGTAACTGTTGCAAGATACC 1050
Query 1089 TGAATGTCACACTTATTGTCCCAGAGCTTGACAAGACCTCGTTTTGGAATGATCCAAGTG 1148
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 1051 TGAATGTCACACTTATTGTGCCGGAGCTTGACAAGACCTCGTTTTGGAACGATCCAAGTG 1110
Query 1149 AGTTCAAAGACATATTCGACGTGGACCATTTCATAAGTTCTTTAAGGGACGAGGTTCGTA 1208
|||| |||||||||||||| ||||| || ||||||||||| || || || || ||||| |
Sbjct 1111 AGTTTAAAGACATATTCGATGTGGATCACTTCATAAGTTCGTTGAGAGATGAAGTTCGGA 1170
Query 1209 TACTAAAAGAGCTT-CCTCCAAGGCTTAAGAGAAGGGTTAG-GCTCGGGCTGTACCAC-A 1265
|||| |||||| || |||||||||||||||| ||||||| | ||| || |||||||| |
Sbjct 1171 TACTCAAAGAG-TTACCTCCAAGGCTTAAGAAAAGGGTT-GAGCTTGGAATGTACCACGA 1228
Query 1266 CCATGCCTCCTATTAGCTGGTCCAACATGTCCTACTACCAAG-ACCAGATTCTTCCGCTG 1324
|||||||||||||| ||||| |||||||| ||||||| || | ||||||||||| |||
Sbjct 1229 -AATGCCTCCTATTAGTTGGTCAAACATGTCTTACTACC-AGAATCAGATTCTTCCACTG 1286
Query 1325 GTGAAGAAGTATAAGGTGGTACATCTGAACAAGACCGATACTCGACTTGCTAATAACGAA 1384
|||||||| ||||||| ||||||||||||| || ||||||||||| |||||||| |||
Sbjct 1287 GTGAAGAAACATAAGGTTTTACATCTGAACAAAACGGATACTCGACTCGCTAATAATGAA 1346
Query 1385 CTACCTGTTGAGATTCAGAAGCTGCGATGCCGAGCAAATTTCAATGGGCTTAGGTTTACT 1444
|| ||||| ||| ||||||||||| | ||||||| ||||||||| ||||||| |||||||
Sbjct 1347 CTGCCTGTAGAGGTTCAGAAGCTGAGGTGCCGAGTAAATTTCAACGGGCTTAAGTTTACT 1406
Query 1445 CCAAAGATTGAGGAATTGGGTAGAAGAGTAGTCAAGATTCTCAGGGAGAAAGGTCCCTTT 1504
|| ||||||||||||| |||||| |||||||||||||||| || |||||||||||||||
Sbjct 1407 CCTCAGATTGAGGAATTAGGTAGACGAGTAGTCAAGATTCTGAGAGAGAAAGGTCCCTTT 1466
Query 1505 CTAGTTCTGCATCTCAGATACGAAATGGATATGTTGGCATTTTCTGGTTGCTCACATGGT 1564
|| || |||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 1467 CTTGTCCTGCATCTCAGATATGAAATGGATATGTTAGCATTTTCTGGTTGTTCACATGGT 1526
Query 1565 TGCAACCGCTACGAAGAGGAAGAACTAACAAGAATGAGATATGCTTATCCGTGGTGGAAA 1624
||||||| | | ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1527 TGCAACCCCGAGGAAGAAGAAGAACTAACAAGAATGAGATATGCTTATCCATGGTGGAAA 1586
Query 1625 GAGAAAGTAATAGACTCCGAGTTGAAGAGGAAAGAAGGTCTTTGCCCATTGACTCCTGAA 1684
|||||||| ||| |||| ||| ||||||||||||| || || ||||| |||||||||||
Sbjct 1587 GAGAAAGTCATAAACTCTGAGCTGAAGAGGAAAGATGGCCTCTGCCCTTTGACTCCTGAG 1646
Query 1685 GAAACAGCTCTTACGCT-ATCTGCATTGGGTATTGACCGAAATGTTCAGATTTACATAGC 1743
||||| ||||| || || | |||| ||||||||||||||||||||||| || ||||||||
Sbjct 1647 GAAACTGCTCTCACTCTGA-CTGCTTTGGGTATTGACCGAAATGTTCAAATATACATAGC 1705
Query 1744 TGCAGGAGAAATATACGGTGGTAAAAGGCGGTTAAAGGCTTTAACAGATGTTTTTCCAAA 1803
||| |||||||| || |||||| |||||||| | |||||||||||||| | |||||||||
Sbjct 1706 TGCTGGAGAAATCTATGGTGGTCAAAGGCGGATGAAGGCTTTAACAGACGCTTTTCCAAA 1765
Query 1804 TGTGGTGAGGAAAGAAACTCTACTCGATTCTTCTGATTTG-AGTTTTTGTAAAAACCATT 1862
|||||| ||||||||||| ||||| || || |||||| || | |||||| || ||||
Sbjct 1766 TGTGGTCAGGAAAGAAACCCTACTTGAATCCTCTGATCTGGA-TTTTTGCCGGAATCATT 1824
Query 1863 CTTCTCAAATGGCTGCTCTTGATTACCTTA-TCTCTCTCGAAAGTGATATATTCGTTCCT 1921
| || ||||||||||| ||||||||||| | | |||| || || |||||||| |||||
Sbjct 1825 CATCGCAAATGGCTGCACTTGATTACCT-AGTGGCTCTTGAGAGCGATATATTTGTTCCA 1883
Query 1922 ACTTATTACGGAAACATGGCGAA-AGTCGTGGAAGGTCATCGCAGGTTCTTGGGGTTCAA 1980
|| || | || |||||||| || |||||| |||||||||||||| ||||||||||||||
Sbjct 1884 ACCAATGATGGGAACATGGC-AAGAGTCGTTGAAGGTCATCGCAGATTCTTGGGGTTCAA 1942
Query 1981 GAAGACAATTGAGCTAAACCGGAAGTTGTTGGTTAAGCTGATAGATGAATATTA-TGAAG 2039
||||||||| |||| || ||| ||| | ||||||||||||||||||||| | |||||
Sbjct 1943 GAAGACAATCCAGCTGAATAGGAGGTTCCTAGTTAAGCTGATAGATGAATAT-ACTGAAG 2001
Query 2040 GATTGTTGAGCTGGGAAGTGTTTTCAACCACGGTTAAGGCCTTTCACGCTACACGAATGG 2099
|||||||||| ||||| || |||||| ||||||| ||||| |||||| |||| |||||||
Sbjct 2002 GATTGTTGAGTTGGGATGTATTTTCATCCACGGTGAAGGCATTTCACTCTACTCGAATGG 2061
Query 2100 GAGGGCCAAAGAGACGGCTAGTGATTCCAAATAAACCGAAAGAAGAAGACTACTTCTATG 2159
|| | || ||||||||| |||||||||| |||| |||||| ||||||||||||||||| |
Sbjct 2062 GAAGCCCTAAGAGACGGTTAGTGATTCCCAATAGACCGAAGGAAGAAGACTACTTCTACG 2121
Query 2160 CTAATCCATATGAATGTCTTCAGCTATTACATGA 2193
| || ||| | |||||||| ||||| ||| ||||
Sbjct 2122 CCAACCCACAAGAATGTCTGCAGCTGTTAGATGA 2155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98349012590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5