BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02270.1
Length=2031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477461 jgi|Araly1|477461|fgenesh2_kg.3__162__AT3G02270.1 1354 0.0
Ahg493035 jgi|Araly1|493035|fgenesh2_kg.7__2468__AT4G18300.1 904 0.0
Ahg482461 jgi|Araly1|482461|fgenesh2_kg.4__1521__AT2G34970.1 669 0.0
> Ahg477461 jgi|Araly1|477461|fgenesh2_kg.3__162__AT3G02270.1
Length=1277
Score = 1354 bits (733), Expect = 0.0
Identities = 931/1023 (91%), Gaps = 28/1023 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTCTCGTAAGAAACGTGCTGCGAAGATTTCAGAGGATTCAGAGGAGGAACAGAGT 60
|||||| |||| ||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGCTCGGAAGAAACGTGCGGCGAAGAGTTCAGAGGATTCAGAGGAGGAACAGAGT 60
Query 61 CGCCGTCAACGGTTACAAGCCATTCTTCTCGCTGACAGTTTCGCCACGAAACTCCTTCCC 120
|| ||||||||||| |||||||||||||| ||||||| ||| |||||||||| ||||||
Sbjct 61 CGTCGTCAACGGTTTCAAGCCATTCTTCTAGCTGACAACTTCACCACGAAACTTCTTCCC 120
Query 121 TTAACCTTAGAACGCCCCAATGTCTTGTTACCGCTAGTGAATATTCCCATGATTGATTAC 180
||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||
Sbjct 121 TTAACCTTAGAACGCCCCAATGTATTGTTACCGCTAGTGAATGTTCCCATGATCGATTAC 180
Query 181 ACCTTAGCTTGGCTCGAATCTGCTGGCATAGAAGAAGTTTTCGTCTTTTGCTCGATGCAA 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 181 ACCTTAGCTTGGCTCGAATCTGCTGGAATAGAAGAAGTTTTCGTCTTTTGCTCGACGCAA 240
Query 241 GTCATCGATTATCTGAACAACTCT-GACTGGTACTCGCACAAAGACTTTACGGTAAAAAC 299
||||||||||||||||| |||||| || |||||||||||||||||||||||||| |||||
Sbjct 241 GTCATCGATTATCTGAAGAACTCTGGA-TGGTACTCGCACAAAGACTTTACGGTGAAAAC 299
Query 300 TATAGAGTCACCGCA-AAACTCCACCAGTGCTGGTGATGCTTTGCGTTATATCTACGAGC 358
|||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 300 GATAGAGTCACCGCACAAA-TCCACTAGTGCTGGTGATGCTTTGCGTTATATCTATGAGC 358
Query 359 AGCAGATTGAGACGTCTCAGATTCAAG--G-TGACTTTGTTCTTGTTAATGGATGTATTG 415
| |||||||| |||||||||||||||| | |||||||||||||||| |||| ||||||
Sbjct 359 AACAGATTGACACGTCTCAGATTCAAGATGACGACTTTGTTCTTGTTAGTGGAGGTATTG 418
Query 416 TTAGTAACATGCCCCTGACGCAGCTGATTCAAGAACACAGAGATAGAAAAAAGAAAGATG 475
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 419 TGAGTAACATGCCCCTAACGCAGCTGATTCAAGAACACAGAGATAGAAAGAAGAAAGATG 478
Query 476 AGAAAGCTATCATGACTATGGTTATCAGACAGTCACTCATCACCGATCATCAACTCTTCA 535
| ||||||||||||||||||||||||| | | | |||||| || || | | ||
Sbjct 479 ATAAAGCTATCATGACTATGGTTATCA--CGG--A-TCATCA---AT--TC---T-T-CA 523
Query 536 TCGCTGTAAATCCTTTAACAAAACAGCTTCTTTATTACGATGAGGACAACATCTGCTTCG 595
||| ||||||||||||||||||||| |||||||||||| |||||||||| |||| ||| |
Sbjct 524 TCGGTGTAAATCCTTTAACAAAACAACTTCTTTATTACAATGAGGACAAGATCTTCTTGG 583
Query 596 ATAAATCATTGCTGGATCGTAATCCATCTGTTTTGTTATGTAGTGATATGCAGGATTGTT 655
||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 584 ATACGTCATTGATGGATCGTAATCCATCTGTTTTGCTATGTAGTGATATGCAGGATTGTT 643
Query 656 ACATTGACATATGTTCTCTTGAGGTGCTTAGTCTA-TTTGTGGATAACTTCGATTACCAA 714
||||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||||
Sbjct 644 ACATTGACATATGTTCTCTTGAGATGCTTAGTC-ACTTTGTGGATAACTGCGATTACCAA 702
Query 715 CATATGCGTTGTGATTTTGTGGAAGGTGTTCTTGCTGATGACATTATCGG-TTACAAGAT 773
||| ||||||||||||||||||||||||||||||||||||| |||| ||| || ||||||
Sbjct 703 CATCTGCGTTGTGATTTTGTGGAAGGTGTTCTTGCTGATGATATTA-CGGGTTTCAAGAT 761
Query 774 TTTCACTCATGAGATTAGCTCGTGTTATGCTTCTAGGATTGAAAATTTCAGGAGCTATGA 833
||||||||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 762 TTTCACTCATGAGATCAGCTCGTGTTATGCTGCTAGGATTGAAAACTTCCGGAGCTATGA 821
Query 834 CATGGTGAGCAAGGATATAATCCAGAGGCGGACATTCCCGTATGTACCGGATATGAAGTT 893
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 CATGGTTAGCAAGGATATAATCCAGAGGCGGACATTCCCGTATGTACCGGATATGAAGTT 881
Query 894 CAGCGGAAATCGCACTCTTAAGCTCGAGAGACAAGGGATCTACAAGGCTTCTGATGCTAC 953
||||||||||| |||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 882 GAGCGGAAATCGGTCTCTTAAGCTCGGGAGACAAGGGAGCTATAAGGCTTCTGATGCTA- 940
Query 954 TCAGTT-ACCATCTGCTCATGTTGGAGCTTCCTATGTCATTGGACATGCCACAAATATTG 1012
|| | | |||||||| ||||||||||| ||||| ||||||||||||||||| ||| ||||
Sbjct 941 TCCGGTCACCATCTGTTCATGTTGGAGATTCCTCTGTCATTGGACATGCCAAAAAGATTG 1000
Query 1013 GGA 1015
|||
Sbjct 1001 GGA 1003
Score = 291 bits (157), Expect = 2e-77
Identities = 195/213 (92%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 1655 CAATATTCTACTCTATGATGAAACTAGCAG-TTAGTACTCCACATAGCTCT-ATTAATGA 1712
|||||||||||||||||||||||||||||| | | |||||||||||||||| | || | |
Sbjct 1004 CAATATTCTACTCTATGATGAAACTAGCAGCTGA-TACTCCACATAGCTCTGA-TATTAA 1061
Query 1713 CTTGTATAGAAACGCATCGAGTATCATTACTCGATGGAAGGGACTTCTTGGGTTCTATGT 1772
|||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CTTGTATAAAAATACGGCGAGTATCATTACTCGATGGAAGGGACTTCTTGGGTTCTATGT 1121
Query 1773 AAAGAAAAGTGATGAACAGATAGAAGTAATATCGAGATTGGAAGAGATGTGTGAAGAATC 1832
|||| ||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1122 AAAGCAAATTGACGAACAGATAGAAGTAATATCGAGATTGGAAGAGATGTGTCAAGAATC 1181
Query 1833 TGCTCATGAGTTGGGAACTTTGTTTGCTCATAT 1865
||| |||||||||||| ||||||||||||||||
Sbjct 1182 TGCGCATGAGTTGGGACCTTTGTTTGCTCATAT 1214
> Ahg493035 jgi|Araly1|493035|fgenesh2_kg.7__2468__AT4G18300.1
Length=2136
Score = 904 bits (489), Expect = 0.0
Identities = 1045/1298 (81%), Gaps = 99/1298 (8%)
Strand=Plus/Plus
Query 64 CGTCAACGGTTACAAGCCATTCTTCTCGCTGACAGTTTCGCCACGAAACTCCTTCCCTTA 123
|||||||||||||||||||| |||| || ||||| ||| |||| || ||| |||| ||
Sbjct 61 CGTCAACGGTTACAAGCCATAGTTCTAGCGGACAGCTTCACCACTCAATTCCGTCCCATA 120
Query 124 ACCTTAGAACGCCCCAATGT-CTTGTTACCGCTAGTGAATATTCCC-ATGATTGATTACA 181
||| |||||||||| || || | | || ||||||||||| | |||| |||||||||||||
Sbjct 121 ACCCTAGAACGCCCTAAGGTAC-TATTGCCGCTAGTGAACA-TCCCGATGATTGATTACA 178
Query 182 CCTTAGCTTGGCTCGAATCTGCTGGCATAGAAGA-AGTTTTC--G-TCT-TT-TG----C 231
| ||||| ||||||||||| ||||| || ||||| | ||||| | ||| || || |
Sbjct 179 CTTTAGCATGGCTCGAATCAGCTGGAATCGAAGATA-TTTTCGTGTTCTGTTGTGTTCAC 237
Query 232 TCGAT-GCAAGTCATCGATTATCTGA-ACAACTCTGACTGGTACT--CGCAC-AA---AG 283
||| | || ||||||||||| || | | || || || ||||||| ||| | || |
Sbjct 238 TCG-TCCCAGGTCATCGATTACCT-AGAGAAATCCGAATGGTACTCACGCTCAAACCCAA 295
Query 284 ACTT-TACGGTAAAAACTATAGAGTCACCGCAAAACTCCACCAGTGCTGGTGATGCTTTG 342
|||| | ||| | ||| |||| ||| || | ||| |||||||||| ||| |||||| ||
Sbjct 296 ACTTGT-TGGTGAGAACGATAGTGTCTCC-C-AAA-TCCACCAGTGTTGGAGATGCTCTG 351
Query 343 CGTTATATCTACGAGCAGCAGATTGAGACGTCTCAGATTCAAGGTGACTTTGTTCTTGTT 402
|||||||| || || || |||| ||||||||||||||||||||||| ||||||||||||
Sbjct 352 CGTTATATATATGAACAACAGACAGAGACGTCTCAGATTCAAGGTGATTTTGTTCTTGTT 411
Query 403 AATGGATG-TATTGTTAGTAACATGCC-CCTGAC-GCAGCTGATTCAAGAACACAGAGAT 459
| ||| | || ||||||||| ||||| | || | | | ||||||||||||| ||||||
Sbjct 412 AGTGG-GGATACTGTTAGTAATATGCCACTTG-CTG-ATTTGATTCAAGAACATAGAGAT 468
Query 460 AGAAAAAAGAAAGATGAGAAAGCTATCATGACTATGGTTA-TCAG-A-CAGTC---ACT- 512
|| || |||||||||||||||||||||||||||||||||| | || | ||||| |||
Sbjct 469 AGGAAGAAGAAAGATGAGAAAGCTATCATGACTATGGTTATTAAGAAGCAGTCTAGACTA 528
Query 513 -CATCACCGATC--ATCAACTCTTCATCGCTGTAAATCCTTTAACAAAACAGCTTCTTTA 569
|| | |||| ||||||||||||| || ||| |||||||||| ||||||||| ||
Sbjct 529 GGATTA-GGATCTGATCAACTCTTCATTGCGGTAGATCCTTTAACGAAACAGCTTGTTCG 587
Query 570 TTACGATG-AGG--A--C---AA-C----A--TCTGCTTCGATAAATCATTGCTGGATCG 614
|||||| | ||| | | || | | | ||||| ||||| |||||| ||||
Sbjct 588 TTACGAGGAAGGTAATGCGAGAATCGGGGACGTTTGCTTAGATAAGTCATTGTTGGA--- 644
Query 615 TAATCCATCTGTTTTGTTATGTAGTGATATGCAGGATTGTTACATTGACATATGTTCTCT 674
|| | | ||||||| |||| | ||||||||||||||||||||||||||| |||||||
Sbjct 645 TAGT--A-CTGTTTTACTATGCAATGATATGCAGGATTGTTACATTGACATTTGTTCTCC 701
Query 675 TGAGGTGCTTAGTCTATTTGTGGATAACTTCGATTACCAACATATGCGTTGTGATTTTGT 734
||||||||||||||| |||| ||||||||| ||||| |||||| |||| || |||||||
Sbjct 702 TGAGGTGCTTAGTCTCTTTGAGGATAACTTTGATTATCAACATCTGCGCCGTCATTTTGT 761
Query 735 GGAA-GGTGTT-CTTGCTGATGACATTATCGGTTACAAGATTTTCACTCATGAGATT-AG 791
|| ||| || |||| |||||| ||||| |||||||||||||| |||||||||||| ||
Sbjct 762 C-AATGGT-TTGCTTGTTGATGATATTATGGGTTACAAGATTTTTACTCATGAGATTCAG 819
Query 792 CTCGTGTT---ATGCTTCTAGGATTGAAAATTT-CAGGAGCTATGACATGGTGAGCAAGG 847
||| ||| ||||| | |||||||||||||| | |||||||||| ||||| ||||||
Sbjct 820 -TCGAGTTTTTATGCTACAAGGATTGAAAATTTAC-GGAGCTATGATATGGTTAGCAAGA 877
Query 848 ATATAATCCAGAGGCGGACATTCCCGTAT-GTACCGGATATGAAGTTCAGCGGAAA-TCG 905
|||||||||||||| |||||| ||||| | ||||| ||||| || ||||||||||| | |
Sbjct 878 ATATAATCCAGAGGTGGACATACCCGT-TCGTACCTGATATCAATTTCAGCGGAAAAT-G 935
Query 906 CACTCTTAA-GCTCGAGAGACAAGGGATCTACAAGGCTTCTGATGCTACT-CAGTTAC-C 962
| |||| || ||||| |||||| ||||| ||| |||||||||||| | | || | || |
Sbjct 936 CTCTCT-AATGCTCGGGAGACAGGGGATATACCGGGCTTCTGATGC-AGTTCAATCACGC 993
Query 963 ATCTGCTCATGTTGGAGCTTCCTA-TGTCATTGGACATGCCACAA-ATATTGGGAGTGG- 1019
|||||| || ||||||||||| | |||||||||| | | ||| | | ||||| | |||
Sbjct 994 -TCTGCTGATATTGGAGCTTCC-ACTGTCATTGGATACGGCACCAGA-ATTGGTAATGGA 1050
Query 1020 GACTAAGATCTTGAACTCTGTTATTGGGAATGGATGTTCTATTGGATCAAATGTGGTGAT 1079
| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1051 GG-TAAAATCTTTAACTCTGTTATTGGGAATGGATGTTCTATTGGATCAAATGTCGTGAT 1109
Query 1080 CCAAGGCTCATACATATGGAACAATGTTACGGTTGAAGATGGATGTGAGATAAGGAATGC 1139
||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1110 AGAAGGCTCGTACATATGGAACAATGTTACGATTGAAGATGGGTGTGAGATAAGGAATGC 1169
Query 1140 TATTGTATGTGATG-AGGTGAAAGTGTGTGCAGGAGCTATTGTGAAACCTGGTGTTGTGT 1198
|||||| ||||||| || ||||| | | ||||||||| || || | ||||||||||| |
Sbjct 1170 TATTGTCTGTGATGGAG-TGAAAATCAGAGCAGGAGCTGTTCTGCAGCCTGGTGTTGTTT 1228
Query 1199 TGTCTTTTAAGGTTGTAGTCGGGAGGGACTTTGTTGTACCTGCATATTCACAGGTTTCAC 1258
||||||| || |||||||| ||| |||||||||||||||||||||||||| |||| ||
Sbjct 1229 TGTCTTTCAATGTTGTAGTTGGGCGGGACTTTGTTGTACCTGCATATTCAAAGGTCTCTT 1288
Query 1259 TACTCCGACAACCAA-TGGAAGAAGACAGTGATGAAGA 1295
|||| | ||| |||| | | |||||||| ||||||||
Sbjct 1289 TACTTCAACAGCCAACTACA-GAAGACAGCGATGAAGA 1325
Score = 387 bits (209), Expect = 2e-106
Identities = 568/733 (77%), Gaps = 58/733 (8%)
Strand=Plus/Plus
Query 1330 TCTAAGCTTGGTCTTGATGGAGCAGGTTACATAT--G--G--CGCCA-AGCG-T-GTGAA 1380
||| ||||||||| ||||||| |||||||||||| | | | | |||| | |||
Sbjct 1405 TCTGAGCTTGGTCCTGATGGAACAGGTTACATATGGGAAGTATGTGACAGCGCTCATGAT 1464
Query 1381 GACGAGTGGAAGCATTCTGTTCCACCAATCCCCAAAGATAAACTTGCTGAGATCATTAAG 1440
|| |||||||| ||||||||| ||||||||||| ||||||||||| || |||| | ||
Sbjct 1465 GAGGAGTGGAAACATTCTGTTGTACCAATCCCCATGGATAAACTTGCCGATATCACTCAG 1524
Query 1441 GCCATTGACGATGATGACACGGATGATGAAAGTGTTGTCACAACTTCCGGCGA--TG--- 1495
||||| ||||||||||||| || ||||||||||||||| || || | || || ||
Sbjct 1525 GCCATGGACGATGATGACATAGAGGATGAAAGTGTTGTCCCACCTGCTGGAGAGTTGAAA 1584
Query 1496 -CTAATAC---TAGTATTAACA---ATG---AT-CT--CT-TTG--ACTTTGAGAGAGAG 1539
| |||| ||||||||||| ||| || | || | | ||||||||||||||
Sbjct 1585 TCCGATACTGATAGTATTAACACTGATGCAAATGATGACTATGGCTACTTTGAGAGAGAG 1644
Query 1540 GTTGATGGCACCTTCTTAA-GGGC--TGTCGAAGAGAAT-ATTGTAGCCGACCTTGCGGT 1595
||||| | |||||||||| || | | | ||| | || | | | | |||| ||
Sbjct 1645 GTTGAAGAAACCTTCTTAATGGCCATTAT-TAAG-G-ATGA-TCT-G--GACCATG-TAA 1696
Query 1596 TTTG-GAGATAAACTCACTCCG-GTTGTCATATAACATGGAATCTGCACATTGTGCTGGT 1653
|| | ||| ||||||| ||| ||| | || ||||||| ||||||| ||||||||||
Sbjct 1697 TTCGCTTGATTAACTCACGCCGATTTG-CGTACAACATGGCATCTGCAGATTGTGCTGGA 1755
Query 1654 GCAATATTCTACTCTATGATGAAACTAGCAGTTAGTACTCCACATAGCTCTATTAATGAC 1713
||| |||||||||||||||||| ||| ||||| | ||||||||||| ||| || |||
Sbjct 1756 GCAGTATTCTACTCTATGATGAGACTGGCAGTAAATACTCCACATAATTCTGCTAGTGAA 1815
Query 1714 TTGTATAGAAACGCATCGAGTATCATTACTCGATGGAAGGGACTTCTTGGGTTCTATGTA 1773
||||| ||||||||| ||| |||||||||| ||||||||||||||||||||| ||| ||
Sbjct 1816 TTGTACAGAAACGCAACGACTATCATTACTAAATGGAAGGGACTTCTTGGGTTTTATTTA 1875
Query 1774 AAGAAAAGTGATGAACAGATAGAAGTAAT-ATCGAGATTGGAAGAGATGTGTGAAGAATC 1832
||| ||| ||||||||||||||| || || || || ||| |||||||||||||| |||||
Sbjct 1876 AAGCAAATTGATGAACAGATAGAGGTGATGAT-GAAATTCGAAGAGATGTGTGAGGAATC 1934
Query 1833 TGCTCATGAGTTGGGAACTTTGTTTGCTCATATTTTACGTTATATGTATGAGGAAGAGAA 1892
|| | |||||||| ||||||||||| | ||| | | || | ||||| | | | ||
Sbjct 1935 TG---AAGAGTTGGGGCCTTTGTTTGCTAAGATTGTGCATTTTCTGTAT---G-ACA-AA 1986
Query 1893 TGACCTTTTGCAAGAAGTTGCAATCTTGAGATGGTCGGATGAGAAAGCCGGAGCTGATGA 1952
||| | ||||||||| ||| || ||||||||| ||| |||||||| || || || ||
Sbjct 1987 -GACGTGGTGCAAGAAGATGCGATATTGAGATGGGGGGAAGAGAAAGCAGGCGCAGACGA 2045
Query 1953 ATCTGACAAAGTTTATCTGAAACAATGCGAGCCATTCATA-ACGTGGCTCAAGGAAACAT 2011
||||||||||||||||||||||||||| ||| |||||||| | ||||||||||||| |||
Sbjct 2046 ATCTGACAAAGTTTATCTGAAACAATGTGAGGCATTCATACA-GTGGCTCAAGGAAGCAT 2104
Query 2012 CTGACGATGAAGA 2024
|||| || |||||
Sbjct 2105 CTGAGGAGGAAGA 2117
> Ahg482461 jgi|Araly1|482461|fgenesh2_kg.4__1521__AT2G34970.1
Length=2347
Score = 669 bits (362), Expect = 0.0
Identities = 596/707 (84%), Gaps = 24/707 (3%)
Strand=Plus/Plus
Query 601 TCATTGCTGGAT-CGTAATCCATCTGTTTT-GTTATGTAGTGATATGCAGGATTGTTACA 658
|||||| ||||| | |||||| |||||||| | |||| | ||||||||||||||| ||||
Sbjct 660 TCATTGTTGGATAC-TAATCCTTCTGTTTTAG-TATGCAATGATATGCAGGATTGCTACA 717
Query 659 TTGACATATGTTCTCTTGAGGTGCTTAGTCTATTTGTGGATAACTTCGATTACCAACATA 718
||||||||||||||| ||||||||||||||| |||| ||||||||| ||||| ||||||
Sbjct 718 TTGACATATGTTCTCCTGAGGTGCTTAGTCTCTTTGAGGATAACTTTGATTATCAACATC 777
Query 719 TGCGTTGTGATTTTGTGGAAGGTGTTCTTGCTGATGACATTATCGGTTACAAGATTTTCA 778
||||| || ||||||| ||||||| |||| |||||| || || ||||| || |||||||
Sbjct 778 TGCGTCGTCATTTTGTCAAAGGTGTGCTTGTTGATGATATCATGGGTTATAAAATTTTCA 837
Query 779 CTCATGAGATT-AGCTCGTGTTATGCTTCTAGGATTGAAAATTTCAGGAGCTATGACA-T 836
||||||||||| | ||| | |||||| ||||||||| |||||| | |||||||||| |
Sbjct 838 CTCATGAGATTCA-CTCCAGCTATGCTGGTAGGATTGATAATTTCCGCAGCTATGACACT 896
Query 837 GGTGAGCAAGGATATAATCCAGAGGCGGACAT-TCCCGTATGTACCGGATATGAAGTTCA 895
|| |||||||||||||| |||||| |||||| | || |||||||| ||||| || ||||
Sbjct 897 -GTTAGCAAGGATATAATTCAGAGGTGGACATAT-CCTTATGTACCAGATATAAATTTCA 954
Query 896 GCGGAAATC-GCACTCTTAAGCTCGAGAGACAAGGGATCTACAAGGCTTCTGATGCTA-C 953
||||||||| || |||||||||||| |||||||||||| ||| ||||||||||| ||
Sbjct 955 GCGGAAATCGGC-CTCTTAAGCTCGGGAGACAAGGGATATACCGGGCTTCTGATG-TAGT 1012
Query 954 TCAGTTACCATCTGCTCATGTTGGAGCTTCCTA-TGTCATTGGACATGCCAC-AAATATT 1011
||| | || ||||||| |||||||||||| ||| ||||||||| | | ||| ||| |||
Sbjct 1013 TCAATCACGATCTGCTGATGTTGGAGCTT-CTACCGTCATTGGATACGGCACGAAA-ATT 1070
Query 1012 GGGAGT-GGGACTAAGATCTTGAACTCTGTTATTGGGAATGGATGTTCTATTGGATCAAA 1070
|| | | |||| ||| |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1071 GGTAATGGGGA-TAAAATCTCGAACTCGGTTATTGGGAATGGATGTTCTATTGGATCAAA 1129
Query 1071 TGTGGTGATCCAAGGCTCATACATATGGAACAATGTTACGGTTGAAGATGGATGTGAGAT 1130
||| ||||| ||||||||||||||||||| ||||||||| |||||||||| ||||||||
Sbjct 1130 TGTCGTGATAGAAGGCTCATACATATGGAATAATGTTACGATTGAAGATGGGTGTGAGAT 1189
Query 1131 AAGGAATGCTATTGTATGTGATG-AGGTGAAAGTGTGTGCAGGAGCTATTGTGAAACCTG 1189
|||||| |||||||| ||||||| || ||||| | | ||||||||| || || | ||||
Sbjct 1190 AAGGAACGCTATTGTCTGTGATGGAG-TGAAAATCAGAGCAGGAGCTGTTCTGCAGCCTG 1248
Query 1190 GTGTTGTGTTGTCTTTTAAGGTTGTAGTCGGGAGGGACTTTGTTGTACCTGCATATTCAC 1249
||||||| |||||||| || |||||||| ||| ||||||||||||| |||||||| |||
Sbjct 1249 GTGTTGTTTTGTCTTTCAATGTTGTAGTTGGGCGGGACTTTGTTGTGCCTGCATACTCAA 1308
Query 1250 AGGTTTCACTACTCCGACAACCAATGGA-AGAAGACAGTGATGAAGA 1295
||||||| ||||| | ||| |||| | |||||| || ||||||||
Sbjct 1309 AGGTTTCCCTACTTCAACAGCCAACA-ACAGAAGATAGCGATGAAGA 1354
Score = 318 bits (172), Expect = 9e-86
Identities = 373/466 (80%), Gaps = 29/466 (6%)
Strand=Plus/Plus
Query 51 GGAACAGAGTCGCCGTCAACGGTTACAAGCCATTCTTCTCGCTGACAGTTTCGCCACGAA 110
|||||||||| |||||||| || ||||| |||||||| || || || |||||||| ||
Sbjct 59 GGAACAGAGT---CGTCAACGATTGCAAGCAATTCTTCTTGCCGATAGCTTCGCCACAAA 115
Query 111 ACTCCTTCCCTTAACCTTAGAACGCCCCAATGT-CTTGTTACCGCTAGTGAATATTCCCA 169
| | | |||| ||||| |||||||||| || || | | || ||| |||| ||| |||| |
Sbjct 116 ATTTCGTCCCGTAACCCTAGAACGCCCAAAGGTAC-TATTGCCGATAGTTAATGTTCCGA 174
Query 170 TGATTGATTACACCTTAGCTTGGCTCGAATCTGCTGGCATAGAAGAAGTTTTCG---TCT 226
|||||||||| || || || ||||||||||||||||| ||||| || ||||||| |||
Sbjct 175 TGATTGATTATACATTGGCATGGCTCGAATCTGCTGGAATAGAGGAGGTTTTCGTCTTCT 234
Query 227 -TT-TG--C--TCGATGCAAGTCATCGATTATCTGAACAACTCTGACTGGTACTCGCA-C 279
|| || | |||||||| || ||||| |||||| | || || || ||||||||||| |
Sbjct 235 GTTGTGCTCATTCGATGCAGGTTATCGAATATCTGGAGAAGTCCGAGTGGTACTCGCACC 294
Query 280 AAAGACTTTAC-GGTAAAAACTATAGAGTCACCGCA-AAACTCCACCAGTGCTGGTGATG 337
|| || || | || | ||| || |||| |||| ||| |||| ||||||||| ||||
Sbjct 295 CAA-AC-TTGCTTGTGAGAACAATCGAGT---CGCATAAA-TCCATCAGTGCTGGAGATG 348
Query 338 CTTTGCGTTATATCTACGAGCAGCAGATTGAGACGTCTCAGATTCAAGGTGACTTTGTTC 397
|||||||||| || || ||||| |||| ||||||||||||||||||||||| |||||||
Sbjct 349 CTTTGCGTTACATGTATGAGCAACAGACAGAGACGTCTCAGATTCAAGGTGATTTTGTTC 408
Query 398 TTGTTAATGGATG-TATTGTTAGTAACATGCCCCTGACGC--AGCTGATTCAAGAACACA 454
|||||| |||| | || ||| ||||| ||||| || | || | ||||| ||||||| |
Sbjct 409 TTGTTAGTGGA-GATACTGTGAGTAATATGCCACT-A-GCTGATTTGATTAAAGAACATA 465
Query 455 GAGATAGAAAAAAGAAAGATGAGAAAGCTATCATGACTATGGTTAT 500
|||| || || |||||||||||||||||||||||||||||||||||
Sbjct 466 GAGAGAGGAAGAAGAAAGATGAGAAAGCTATCATGACTATGGTTAT 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76370941225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5