BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02290.1
Length=1451
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340373 jgi|Araly1|340373|fgenesh1_pg.C_scaffold_3000136 1147 0.0
Ahg488423 jgi|Araly1|488423|fgenesh2_kg.6__1557__AT5G15790.1 477 9e-134
> Ahg340373 jgi|Araly1|340373|fgenesh1_pg.C_scaffold_3000136
Length=696
Score = 1147 bits (621), Expect = 0.0
Identities = 671/696 (96%), Gaps = 0/696 (0%)
Strand=Plus/Plus
Query 425 ATGGGATGTGTTTCTTCTTGCTTCCGGGTCGAGGACATTGATGAGTACATGAATCCAAAC 484
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 1 ATGGGATGTGTTTCTTCTTGCTTCCGGGTCGAAGACATTGATGACTACATGAATCCTAAT 60
Query 485 AGCTCTGTCTATAGGAACTGTCCCTGCATAAGATGCCTTGCTCATAATTTCCTTAACCTG 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCTCTGTCTATAGGAACTGTCCCTGCATAAGATGCCTTGCTCATAATTTCCTTAACCTG 120
Query 545 TATATTTCGGTCTTCAGAAGAGGGGAAACTCGCTCTCTCCCATCTTCGGTTCAAGCTACT 604
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 121 TATATCTCGGTCTTCAGAAGAGGTGAAACCCGCTCTCTCCCATCTTCGGTTCAAGCTACT 180
Query 605 GCATCGATAACTTCCTCTTCTTCACACGATAACTTTTTGTCTGAAGCATTCCGTTCTACT 664
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 GCATCGATAACTTCCTCTTCTTCACACGATAACTTTCTGTCTGAAGCATTCCGTTCTACA 240
Query 665 CCAAGACCTCTGCCTTATGATGCTGATCCTAGATACTTCCGCTCACTCGTCTCAAGACGG 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCAAGACCTCTGCCTTATGATGCTGATCCTAGATACTTCCGCTCACTCGTCTCAAGACGG 300
Query 725 GAGAAGGGTTCAAGTCATTCTCATGAGGAAGTTGAACCTTTAAGAAGCGATAGCGATGCA 784
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 301 GAGAAGGGTTCAAGTCATTCCCATGAGGAAGTTGAACCTTTACGAAGCGATAGCGATGCA 360
Query 785 GATTCTGAATCTTTCGGGGTAGGAGGGTGCAAATGGGCTAATAATAAGTCCACCCTCTCT 844
|||||||| |||||||| ||||||| |||||||||||||||||||| |||||| |||||
Sbjct 361 GATTCTGAGTCTTTCGGCCTAGGAGGATGCAAATGGGCTAATAATAAATCCACCATCTCT 420
Query 845 GATAAAGATTCCAAAGAAGAGTACTCTAGTAAATCCAGTCTCAGGATTTTGAGATCAAGG 904
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 GATAAAGATTCCAAAGAAGAGTACTCTAGTAAATCCAGTCTCAGGATTTTGAGATCAAAG 480
Query 905 TCCAAGTCAATAATGGCCGACTCTGAAAACATGTATATATTGTCTGAAGACGAAGATGTC 964
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 TCCAAGTCAATAATGGCCGACTCTGAAAACATGTATATATTGTCTGAAGATGAAGATGTT 540
Query 965 TGCCCAACTTGTCTTGAAGAATATACATCAGAGAACCCAAAGATTGTGACAAAATGTTCA 1024
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGCCCTACTTGTCTTGAAGAATATACATCAGAGAACCCAAAGATTGTGACAAAATGTTCT 600
Query 1025 CACCATTTCCACCTTAGTTGCATTTATGAGTGGATGGAGAGAAGTGAAAACTGTCCAGTC 1084
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 CACCATTTCCACCTTAGTTGCATTTATGAGTGGATGGAGAGAAGTGAAAACTGTCCTGTC 660
Query 1085 TGCGGAAAGGTGATGGAATTCAACGAAACACCGTGA 1120
||||| |||||||||||||||||||||||||| |||
Sbjct 661 TGCGGGAAGGTGATGGAATTCAACGAAACACCATGA 696
> Ahg488423 jgi|Araly1|488423|fgenesh2_kg.6__1557__AT5G15790.1
Length=1377
Score = 477 bits (258), Expect = 9e-134
Identities = 631/801 (79%), Gaps = 66/801 (8%)
Strand=Plus/Plus
Query 416 GAGGAGAAGATGGGATGTGTTTCTTCTTGCTTCCGGGTCGAGGACATTGATGAGTACATG 475
||| || ||||||| ||||||||||||||||| |||||||| ||| |||| || ||| |
Sbjct 343 GAGAAGGAGATGGGCTGTGTTTCTTCTTGCTTTCGGGTCGAAGACTTTGAGGATTACCCG 402
Query 476 AATCCAAACAG--C-TCTGTCT-ATAGGAA-CTGTCCC-TGCATAAGATGCCTTGCTCAT 529
||||||| || | ||||| | | | ||| ||| ||| ||| ||||| || | ||
Sbjct 403 AATCCAAGTAGTTCTTCTGT-TAACA-GAACCTG-CCCATGCCCGAGATGTCTCATTAAT 459
Query 530 AATTTCCTTAACCTGTATATTTCGGTCTTCAGAAGAGGGGAAACTCGCTCTCTCCCATCT 589
|| ||||||||||||||||| || | ||||||||||| ||||| ||||||||||| ||
Sbjct 460 AACTTCCTTAACCTGTATATCTCTTTATTCAGAAGAGGCGAAACCCGCTCTCTCCCGTCC 519
Query 590 TCGGTT-CAAGCTAC---TGCATCGATAACTTCCTCTTCTTCACACGATAACTTTTTGTC 645
|| || || ||||| || ||| ||| |||| ||| |||| | ||||||||| ||||
Sbjct 520 TC-TTTACAGGCTACTAATGTATCAATAGCTTCATCTACTTCGTATGATAACTTTATGTC 578
Query 646 TGAA-GCATTCCGTTCTACTCCAAGACCTCTGCCTTATGATGCTGATCCTAGATACTTCC 704
| || |||||| |||||||||||| ||||||||||||||| ||||||| ||||||||||
Sbjct 579 T-AATACATTCCATTCTACTCCAAGGCCTCTGCCTTATGATACTGATCCAAGATACTTCC 637
Query 705 GCTC-A--C-----T--C--GTCTCAAGACGGGAGAAGGGTTCAAGTCATTCTCATGAGG 752
| || | | | | ||||||||||| || |||||||||||||||||||||||||
Sbjct 638 GGTCAAGGCGTGATTCCCTTGTCTCAAGACGCGATAAGGGTTCAAGTCATTCTCATGAGG 697
Query 753 AAGTTGAACCTTTAAGAAGCGATAGC-GATGCAGATTCTGAATCTTTCGGGGTAGGAGGG 811
||| ||| || |||||||||||| || |||| |||||||| |||||| || ||| ||
Sbjct 698 AAGCTGAGCCCTTAAGAAGCGAT-GCTGATGTGGATTCTGAGTCTTTCTCAGT-GGAAGG 755
Query 812 T-GCAAATGGGCTAATAA--TAAGTCCACCCTCTCTGATAAAGATTCCAAAGAAGAGTAC 868
|||||||| ||||||| | | | | |||||| | ||||||||||||||||||
Sbjct 756 AAGCAAATGGACTAATAAGCTTATT--A---TCTCTGGTGAAGATTCCAAAGAAGAGTTT 810
Query 869 TCTAGTAAATCCAGTCTC--AGGATT-TTGAGATCAAGGTCCAA-GTCAATAATGGCCGA 924
|||| || ||| |||| |||||| || || |||||| | || | | || ||| |
Sbjct 811 TCTA--AA-TCC--TCTCGGAGGATTCTTCAG-TCAAGGAC-AATGGC--TACTGGTA-A 860
Query 925 CTCTGAAAACATGTATATAT-TGTCTGAAGACGAAGATGTCTGCCCAACTTGTCTTGAAG 983
| ||| |||||||| | ||||| || ||||||||||| ||||| ||||||||||
Sbjct 861 -T--GAAGGTGTGTATATAACT-TCTGATGATGAAGATGTCTGTCCAACGTGTCTTGAAG 916
Query 984 AATATACATCAGAGAACCCAAAGATTGTGACAAAATGTTCACACCATTTCCACCTTAGTT 1043
|||| |||||||||||||| |||||||| ||||| ||||| |||||||||||||| ||||
Sbjct 917 AATACACATCAGAGAACCCGAAGATTGTTACAAATTGTTCTCACCATTTCCACCTCAGTT 976
Query 1044 GCATTTATGAGTGGATGGAGAGAAGTGAAAACTGTCCAGTCTGCGGAAAGGTGATGGAAT 1103
|||||||||| ||||||||||||||||||||||| || || || |||||||||||||| |
Sbjct 977 GCATTTATGAATGGATGGAGAGAAGTGAAAACTGCCCTGTTTGTGGAAAGGTGATGGAGT 1036
Query 1104 TCAACGAAACACCGTGATCA-TCGACCATTGATCCGTGTCCTGTA-T-C-TGAACTGAAA 1159
||||||||||||||| | | | ||||||||||| ||| |||| | | | ||| |||
Sbjct 1037 TCAACGAAACACCGTAACCTGTT-ACCATTGATCCC-GTCTTGTACTGCCTAAACCGAAG 1094
Query 1160 CCGGGGAAGAT-GACAAGGCA 1179
| ||||| ||| |||||||||
Sbjct 1095 CTGGGGA-GATTGACAAGGCA 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54278599125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5