BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G02310.1 Length=1415 Score E Sequences producing significant alignments: (Bits) Value Ahg927709 jgi|Araly1|927709|scaffold_300166.1 1339 0.0 Ahg941068 jgi|Araly1|941068|scaffold_601612.1 802 0.0 > Ahg927709 jgi|Araly1|927709|scaffold_300166.1 Length=793 Score = 1339 bits (725), Expect = 0.0 Identities = 773/796 (97%), Gaps = 4/796 (1%) Strand=Plus/Plus Query 366 GGA-TTTTTTGGGGTGAGGAAAGATGGGAAGAGGAAGAGTAGAGCTCAAGAGGATAGAGA 424 ||| |||||||||| || ||| ||||||||||||||||||||||||||||||||||||| Sbjct 1 GGATTTTTTTGGGG-GA--AAAAATGGGAAGAGGAAGAGTAGAGCTCAAGAGGATAGAGA 57 Query 425 ACAAAATCAACAGACAAGTGACGTTTGCTAAACGTAGAAATGGTTTGCTGAAAAAAGCTT 484 ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 58 ACAAAATCAACAGACAAGTGACGTTTGCTAAACGTAGGAATGGTTTGTTGAAAAAAGCTT 117 Query 485 ATGAGCTTTCTGTTCTCTGCGATGCTGAAGTCTCTCTCATCGTCTTCTCCAACCGTGGCA 544 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 118 ATGAGCTTTCTGTTCTCTGCGATGCTGAGGTCTCTCTCATCGTCTTCTCCAACCGTGGCA 177 Query 545 AGCTCTACGAGTTCTGCAGCACCTCCAACATGCTCAAGACACTGGAAAGGTATCAGAAGT 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 AGCTCTACGAGTTCTGCAGCACCTCCAACATGCTCAAGACACTGGAAAGGTATCAGAAGT 237 Query 605 GTAGCTATGGCTCCATTGAAGTCAACAACAAACCTGCTAAAGAGCTTGAGAACAGCTACA 664 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 238 GTAGCTATGGCTCCATTGAAGTCAACAACAAACCTGCTAAAGAACTTGAGAACAGCTACA 297 Query 665 GAGAGTACTTGAAGCTGAAAGGTAGATATGAAAATCTGCAACGTCAGCAGAGAAATCTTC 724 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 GAGAGTATTTGAAGCTGAAAGGTAGATATGAAAATCTGCAACGTCAGCAGAGAAATCTTC 357 Query 725 TTGGAGAGGATCTTGGACCTCTGAATTCAAAGGAGCTAGAGCAGCTTGAGCGTCAACTAG 784 |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 358 TTGGAGAGGACCTTGGACCTCTGAACTCAAAGGAGCTAGAGCAGCTGGAGCGTCAACTAG 417 Query 785 ACGGCTCTCTGAAGCAAGTTCGCTGCATCAAGACACAGTATATGCTTGACCAGCTCTCTG 844 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 ACGGCTCTCTGAAGCAAGTTCGCTGCATCAAGACACAGTATATGCTTGACCAGCTCTCTG 477 Query 845 ATCTTCAAGGTAAGGAGCATATCTTGCTTGATGCCAACAGAGCTTTGTCAATGAAGCTGG 904 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 478 ATCTTCAAGGTAAGGAGCATATCTTGCTTGAAGCCAACAGAGCTTTGTCAATGAAGCTGG 537 Query 905 AAGATATGATCGGCGTGAGACATCACCATATAGGAGGAGGATGGGAAGGTGGTGATCAAC 964 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 538 AAGATATGATCGGCGTGAGACATCACCATATAGGAGGAGCATGGGAAGGTGGTGATCAAC 597 Query 965 AGAATATTGCCTATGGACATCCTCAGGCTCATTCTCAGGGACTATACCAATCTCTTGAAT 1024 | || |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 ATAACGTTGCATATGGACATCCTCAGGCTCATTCTCAGGGACTATACCAATCTCTTGAAT 657 Query 1025 GTGATCCCACTTTGCAAATTGGATATAGCCATCCAGTGTGCTCAGAGCAAATGGCTGTGA 1084 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 658 GTGATCCCACTTTGCAAATTGGATATAGCCATCCAGTGTGTTCAGAGCAAATGGCTGTGA 717 Query 1085 CGGTGCAAGGTCAGTCCCAACAAGGAAACGGCTACATCCCTGGCTGGATGCTGTGAGCGA 1144 ||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 718 CGGCGCAAGGTCAGTCCCAACCAGGACACGGCTACATCCCTGGCTGGATGCTGTGAGCGA 777 Query 1145 TACTTCTTCCCCCAAT 1160 |||||||||||||||| Sbjct 778 TACTTCTTCCCCCAAT 793 > Ahg941068 jgi|Araly1|941068|scaffold_601612.1 Length=790 Score = 802 bits (434), Expect = 0.0 Identities = 655/761 (86%), Gaps = 17/761 (2%) Strand=Plus/Plus Query 388 ATGGGAAGAGGAAGAGTAGAGCTCAAGAGGATAGAGAACAAAATCAACAGACAAGTGACG 447 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 21 ATGGGAAGAGGAAGAGTAGAGCTGAAGAGGATAGAGAACAAAATCAACAGACAAGTAACG 80 Query 448 TTTGCTAAA-CGTAGAAATGGTTTGCTGAAAAAAGCTTATGAGCTT-TCTGTTCTCTGCG 505 ||||| ||| ||||| || |||||| |||| ||||||||||| || |||||||| || | Sbjct 81 TTTGC-AAAGCGTAGGAACGGTTTGTTGAAGAAAGCTTATGA-ATTGTCTGTTCTTTGTG 138 Query 506 ATGCTGAAGTCT-CTCTCATCGTCTTCTCCAACCGTGGCAAGCTCTACGAGTTCTGCAGC 564 ||||||| || | |||||||| |||||||||||||||| |||||||||||||| |||||| Sbjct 139 ATGCTGAGGT-TGCTCTCATCATCTTCTCCAACCGTGGAAAGCTCTACGAGTTTTGCAGC 197 Query 565 ACCTCCAACATGCTCAAGACACTGGAAAGGTATCAGAAGTGTAGCTATGGCTCCATTGAA 624 ||||||||||||||||||||||||| |||| ||||| || |||||||||||||||||| Sbjct 198 TCCTCCAACATGCTCAAGACACTGGATCGGTACCAGAAATGCAGCTATGGCTCCATTGAA 257 Query 625 GTCAACAACAAACCTGCTAAAGAGCTTGAGAACAGCTACAGAGAGTA-CTTGAAGCTGAA 683 ||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||| || Sbjct 258 GTCAACAACAAACCTGCCAAAGAACTTGAGAACAGCTACAGAGAGTATCT-GAAGCTTAA 316 Query 684 AGGTAGATATGAAAATCTGCAACGTCAGCAGAGAAATCTTCTTGGAGAGGATCTTGGACC 743 ||||||||||| || || || ||||| ||||||||||||||||| |||||||| ||||| Sbjct 317 GGGTAGATATGAGAACCTTCAGCGTCAACAGAGAAATCTTCTTGGGGAGGATCTAGGACC 376 Query 744 TCTGAATTCAAAGGAGCTAGAGCAGCTTGAGCGTCAACTAGACGGCTCTCTGAAGCAAGT 803 |||||||||||||||| |||| ||||||||||||||||| ||||| ||||| |||||||| Sbjct 377 TCTGAATTCAAAGGAGTTAGAACAGCTTGAGCGTCAACTGGACGGTTCTCTCAAGCAAGT 436 Query 804 TCGCTGCATCAAGACACAGTATATGCTTGACCAGCTCTCTGATCTTCAAGGTAAGGAGCA 863 ||| | ||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| Sbjct 437 TCGGTCCATCAAGACACAGTACATGCTTGACCAGCTCTCTGATCTTCAAAATAAAGAGCA 496 Query 864 TATCTTGCTTGATGCCAACAGAGCTTTGTCAATGAAGCTGGAAGATATGATCGGCGTGAG 923 || |||||||| |||| ||||||||| ||||||||||||| |||||||| || ||||| Sbjct 497 AATGTTGCTTGAAACCAATAGAGCTTTGGCAATGAAGCTGGATGATATGATTGGTGTGAG 556 Query 924 ACA-TCACCATATAGGAGGAGGATGGGAAGGTGGTGATCAACAGAATATTGCCTATG-GA 981 | | ||| ||||| ||||||||||||||||| ||||| | |||||| || |||| | | Sbjct 557 A-AGTCATCATATGGGAGGAGGATGGGAAGGCGGTGA--A-CAGAATGTTACCTACGCG- 611 Query 982 CATCCTCAGGCTCATTCTCAGGGACTATACCAATCTCTTGAATGTGATCCCACTTTGCAA 1041 |||| ||| | ||| ||||||||||||||||| |||||||||| |||| ||| ||||| Sbjct 612 CATCATCAAGTTCAGTCTCAGGGACTATACCAGCCTCTTGAATGCAATCCAACTCTGCAA 671 Query 1042 ATTGGATATAGCCA-TCCAGTGTGCTCAGAGCAAATGGCTGTGACGGTGCAAGGTCAGTC 1100 || || ||| | | ||| || ||||| |||||||| ||| ||| |||| |||| | Sbjct 672 ATGGGGTAT-GATAATCCGGTATGCTCGGAGCAAATAACTGCGACAACACAAGCTCAGGC 730 Query 1101 CCAACAAGGAAACGGCTACATCCCTGGCTGGATGCTGTGAG 1141 || || |||||||| |||||||| || |||||||| |||| Sbjct 731 GCAGCAGGGAAACGGTTACATCCCAGGGTGGATGCTTTGAG 771 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52907350305 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5