BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02310.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927709 jgi|Araly1|927709|scaffold_300166.1 1339 0.0
Ahg941068 jgi|Araly1|941068|scaffold_601612.1 802 0.0
> Ahg927709 jgi|Araly1|927709|scaffold_300166.1
Length=793
Score = 1339 bits (725), Expect = 0.0
Identities = 773/796 (97%), Gaps = 4/796 (1%)
Strand=Plus/Plus
Query 366 GGA-TTTTTTGGGGTGAGGAAAGATGGGAAGAGGAAGAGTAGAGCTCAAGAGGATAGAGA 424
||| |||||||||| || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 GGATTTTTTTGGGG-GA--AAAAATGGGAAGAGGAAGAGTAGAGCTCAAGAGGATAGAGA 57
Query 425 ACAAAATCAACAGACAAGTGACGTTTGCTAAACGTAGAAATGGTTTGCTGAAAAAAGCTT 484
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 58 ACAAAATCAACAGACAAGTGACGTTTGCTAAACGTAGGAATGGTTTGTTGAAAAAAGCTT 117
Query 485 ATGAGCTTTCTGTTCTCTGCGATGCTGAAGTCTCTCTCATCGTCTTCTCCAACCGTGGCA 544
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 118 ATGAGCTTTCTGTTCTCTGCGATGCTGAGGTCTCTCTCATCGTCTTCTCCAACCGTGGCA 177
Query 545 AGCTCTACGAGTTCTGCAGCACCTCCAACATGCTCAAGACACTGGAAAGGTATCAGAAGT 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AGCTCTACGAGTTCTGCAGCACCTCCAACATGCTCAAGACACTGGAAAGGTATCAGAAGT 237
Query 605 GTAGCTATGGCTCCATTGAAGTCAACAACAAACCTGCTAAAGAGCTTGAGAACAGCTACA 664
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 238 GTAGCTATGGCTCCATTGAAGTCAACAACAAACCTGCTAAAGAACTTGAGAACAGCTACA 297
Query 665 GAGAGTACTTGAAGCTGAAAGGTAGATATGAAAATCTGCAACGTCAGCAGAGAAATCTTC 724
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GAGAGTATTTGAAGCTGAAAGGTAGATATGAAAATCTGCAACGTCAGCAGAGAAATCTTC 357
Query 725 TTGGAGAGGATCTTGGACCTCTGAATTCAAAGGAGCTAGAGCAGCTTGAGCGTCAACTAG 784
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 358 TTGGAGAGGACCTTGGACCTCTGAACTCAAAGGAGCTAGAGCAGCTGGAGCGTCAACTAG 417
Query 785 ACGGCTCTCTGAAGCAAGTTCGCTGCATCAAGACACAGTATATGCTTGACCAGCTCTCTG 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACGGCTCTCTGAAGCAAGTTCGCTGCATCAAGACACAGTATATGCTTGACCAGCTCTCTG 477
Query 845 ATCTTCAAGGTAAGGAGCATATCTTGCTTGATGCCAACAGAGCTTTGTCAATGAAGCTGG 904
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 478 ATCTTCAAGGTAAGGAGCATATCTTGCTTGAAGCCAACAGAGCTTTGTCAATGAAGCTGG 537
Query 905 AAGATATGATCGGCGTGAGACATCACCATATAGGAGGAGGATGGGAAGGTGGTGATCAAC 964
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 538 AAGATATGATCGGCGTGAGACATCACCATATAGGAGGAGCATGGGAAGGTGGTGATCAAC 597
Query 965 AGAATATTGCCTATGGACATCCTCAGGCTCATTCTCAGGGACTATACCAATCTCTTGAAT 1024
| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATAACGTTGCATATGGACATCCTCAGGCTCATTCTCAGGGACTATACCAATCTCTTGAAT 657
Query 1025 GTGATCCCACTTTGCAAATTGGATATAGCCATCCAGTGTGCTCAGAGCAAATGGCTGTGA 1084
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 658 GTGATCCCACTTTGCAAATTGGATATAGCCATCCAGTGTGTTCAGAGCAAATGGCTGTGA 717
Query 1085 CGGTGCAAGGTCAGTCCCAACAAGGAAACGGCTACATCCCTGGCTGGATGCTGTGAGCGA 1144
||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 718 CGGCGCAAGGTCAGTCCCAACCAGGACACGGCTACATCCCTGGCTGGATGCTGTGAGCGA 777
Query 1145 TACTTCTTCCCCCAAT 1160
||||||||||||||||
Sbjct 778 TACTTCTTCCCCCAAT 793
> Ahg941068 jgi|Araly1|941068|scaffold_601612.1
Length=790
Score = 802 bits (434), Expect = 0.0
Identities = 655/761 (86%), Gaps = 17/761 (2%)
Strand=Plus/Plus
Query 388 ATGGGAAGAGGAAGAGTAGAGCTCAAGAGGATAGAGAACAAAATCAACAGACAAGTGACG 447
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 21 ATGGGAAGAGGAAGAGTAGAGCTGAAGAGGATAGAGAACAAAATCAACAGACAAGTAACG 80
Query 448 TTTGCTAAA-CGTAGAAATGGTTTGCTGAAAAAAGCTTATGAGCTT-TCTGTTCTCTGCG 505
||||| ||| ||||| || |||||| |||| ||||||||||| || |||||||| || |
Sbjct 81 TTTGC-AAAGCGTAGGAACGGTTTGTTGAAGAAAGCTTATGA-ATTGTCTGTTCTTTGTG 138
Query 506 ATGCTGAAGTCT-CTCTCATCGTCTTCTCCAACCGTGGCAAGCTCTACGAGTTCTGCAGC 564
||||||| || | |||||||| |||||||||||||||| |||||||||||||| ||||||
Sbjct 139 ATGCTGAGGT-TGCTCTCATCATCTTCTCCAACCGTGGAAAGCTCTACGAGTTTTGCAGC 197
Query 565 ACCTCCAACATGCTCAAGACACTGGAAAGGTATCAGAAGTGTAGCTATGGCTCCATTGAA 624
||||||||||||||||||||||||| |||| ||||| || ||||||||||||||||||
Sbjct 198 TCCTCCAACATGCTCAAGACACTGGATCGGTACCAGAAATGCAGCTATGGCTCCATTGAA 257
Query 625 GTCAACAACAAACCTGCTAAAGAGCTTGAGAACAGCTACAGAGAGTA-CTTGAAGCTGAA 683
||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||| ||
Sbjct 258 GTCAACAACAAACCTGCCAAAGAACTTGAGAACAGCTACAGAGAGTATCT-GAAGCTTAA 316
Query 684 AGGTAGATATGAAAATCTGCAACGTCAGCAGAGAAATCTTCTTGGAGAGGATCTTGGACC 743
||||||||||| || || || ||||| ||||||||||||||||| |||||||| |||||
Sbjct 317 GGGTAGATATGAGAACCTTCAGCGTCAACAGAGAAATCTTCTTGGGGAGGATCTAGGACC 376
Query 744 TCTGAATTCAAAGGAGCTAGAGCAGCTTGAGCGTCAACTAGACGGCTCTCTGAAGCAAGT 803
|||||||||||||||| |||| ||||||||||||||||| ||||| ||||| ||||||||
Sbjct 377 TCTGAATTCAAAGGAGTTAGAACAGCTTGAGCGTCAACTGGACGGTTCTCTCAAGCAAGT 436
Query 804 TCGCTGCATCAAGACACAGTATATGCTTGACCAGCTCTCTGATCTTCAAGGTAAGGAGCA 863
||| | ||||||||||||||| ||||||||||||||||||||||||||| ||| |||||
Sbjct 437 TCGGTCCATCAAGACACAGTACATGCTTGACCAGCTCTCTGATCTTCAAAATAAAGAGCA 496
Query 864 TATCTTGCTTGATGCCAACAGAGCTTTGTCAATGAAGCTGGAAGATATGATCGGCGTGAG 923
|| |||||||| |||| ||||||||| ||||||||||||| |||||||| || |||||
Sbjct 497 AATGTTGCTTGAAACCAATAGAGCTTTGGCAATGAAGCTGGATGATATGATTGGTGTGAG 556
Query 924 ACA-TCACCATATAGGAGGAGGATGGGAAGGTGGTGATCAACAGAATATTGCCTATG-GA 981
| | ||| ||||| ||||||||||||||||| ||||| | |||||| || |||| | |
Sbjct 557 A-AGTCATCATATGGGAGGAGGATGGGAAGGCGGTGA--A-CAGAATGTTACCTACGCG- 611
Query 982 CATCCTCAGGCTCATTCTCAGGGACTATACCAATCTCTTGAATGTGATCCCACTTTGCAA 1041
|||| ||| | ||| ||||||||||||||||| |||||||||| |||| ||| |||||
Sbjct 612 CATCATCAAGTTCAGTCTCAGGGACTATACCAGCCTCTTGAATGCAATCCAACTCTGCAA 671
Query 1042 ATTGGATATAGCCA-TCCAGTGTGCTCAGAGCAAATGGCTGTGACGGTGCAAGGTCAGTC 1100
|| || ||| | | ||| || ||||| |||||||| ||| ||| |||| |||| |
Sbjct 672 ATGGGGTAT-GATAATCCGGTATGCTCGGAGCAAATAACTGCGACAACACAAGCTCAGGC 730
Query 1101 CCAACAAGGAAACGGCTACATCCCTGGCTGGATGCTGTGAG 1141
|| || |||||||| |||||||| || |||||||| ||||
Sbjct 731 GCAGCAGGGAAACGGTTACATCCCAGGGTGGATGCTTTGAG 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5