BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02320.1
Length=2158
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927711 jgi|Araly1|927711|scaffold_300168.1 3105 0.0
Ahg488427 jgi|Araly1|488427|fgenesh2_kg.6__1561__AT5G15810.1 1587 0.0
> Ahg927711 jgi|Araly1|927711|scaffold_300168.1
Length=1810
Score = 3105 bits (1681), Expect = 0.0
Identities = 1760/1798 (98%), Gaps = 5/1798 (0%)
Strand=Plus/Plus
Query 159 AAGCAATGGAAACGGATCTGAATGATTATACTGTTATCAAGGAAGGAGAAGCTGAGATTC 218
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 16 AAGCAATGGAAACGGATCTGAATGACTATACTGTTATCAAGGAAGGAGAAGCTGAGATTC 75
Query 219 TCATGCACAAGAAGAATCAAGTCTTCTTCAATAAAGCTCAGGTGAACAATAGAGACATGT 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 TCATGCACAAGAAGAATCAAGTCTTCTTCAATAAAGCTCAGGTGAACAATAGAGACATGT 135
Query 279 CCATTGCTGTTCTAAGGGAATTTCTATCGAAACGCAAGCAAGAGCATGAGGCTAAGTCAT 338
||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 136 CCATTGCTGTTCTAAGGGAATTTATATCAAAACGCAAGCAAGAGCATGAAGCTAAGTCAT 195
Query 339 CTAAAAGAACTAGACCAGCTTCCAAAGTGATTGAGAAGGATGCTTCTGAAGCTTCCAAGG 398
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 196 CTAAAAGAACTAGACCAGCTTCCAAAGTGATCGAGAAGGATGCTTCTGAAGCTTCCAAGG 255
Query 399 AAGAAACTCCTAGCGAGAACGGTATGAATAATGGTGATCACGAAGTAGCATCTGAAGATG 458
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 AAGAAACTCCGAGCAAGAACGGTATGAATAATGGTGATCACGAAGTAGCATCTGAAGATG 315
Query 459 GACCAAGCTCTGTATCAAAAGACCCTGCTAAGACAACAGAACGATTTGCACCTAGAGAAC 518
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GACCAAGCTCTGCATCAAAAGACCCTGCTAAGACAACAGAACGATTTGCACCTAGAGAAC 375
Query 519 CCAAGCCACCAAAAGTTCTTGAGGCTTTGTCAGCTTCTGGGTTACGGGCTCTAAGATATG 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 CCAAGCCACCAAAAGTTCTTGAGGCTTTGTCAGCTTCTGGGTTACGGGCTCTAAGATATG 435
Query 579 CACGCGAAATAGAAGGAATTGGTCAGGTTGTGGCGTTGGATAATGATTTAGCATCGGTCG 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 CACGCGAAATAGAAGGAATTGGTCAGGTTGTGGCGTTGGATAATGATTTAGCATCGGTCG 495
Query 639 AAGCTTGCCAGAGAAACATAAAGTTCAATGGCTCAGTGGCTATTTCAAAGGTGGAGTCAC 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 AAGCTTGCCAGAGAAACATAAAGTTCAATGGCTCAGTGGCTATTTCAAAGGTGGAGTCAC 555
Query 699 ATCATACCGATGCTCGTGTCCATATGCTTACCCACCCTAAAGAATTTGATGTGGTTGATC 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 ATCATACCGATGCTCGTGTCCATATGCTTACCCACCCTAAAGAATTTGATGTGGTTGATC 615
Query 759 TTGATCCATATGGATCACCATCTATTTTCCTTGACTCGGCTATTCAATCAGTCACGGATG 818
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 616 TTGATCCATATGGATCACCGTCTATTTTCCTTGACTCGGCTATTCAATCAGTCACGGATG 675
Query 819 GTGGATTGCTAATGTGTACAGCAACTGACATGGCAGTGTTATGTGGTGGTAACGGTGAAG 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 GTGGATTGCTAATGTGTACAGCAACTGACATGGCAGTGTTATGTGGTGGTAACGGTGAAG 735
Query 879 TTTGCTATTCCAAATATGGTTCTTACCCATTGAGAGCGAAGTATTGTCATGAGATGGCTT 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 TTTGCTATTCCAAATATGGTTCTTACCCATTGAGAGCGAAGTATTGTCATGAGATGGCTT 795
Query 939 TGCGGATCCTCCTTGCCAGCATCGAGAGCCATGCAAACCGCTACAAGCGGTATATTGTTC 998
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 TGCGGATCCTTCTTGCCAGCATCGAGAGCCATGCAAACCGCTACAAGCGGTATATTGTTC 855
Query 999 CGGTGCTATCTGTGCAAATGGATTTCTATGTTCGTGTTTTTGTCCGCGTTTACACCTCGG 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 CGGTGCTATCTGTGCAAATGGATTTCTATGTTCGTGTTTTTGTCCGCGTTTACACCTCGG 915
Query 1059 CGAGTGCAATGAAGAACACTCCATTGAAGCTCTCTTACGTATATCAATGCATTGGCTGTG 1118
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 916 CGAGTGCAATGAAGAACACTCCATTGAAACTCTCTTACGTATATCAATGCATTGGTTGTG 975
Query 1119 ATTCATTTCATCTTCAACCTGTTGGAAGATCTCTCCCTAAGAACAACAGTGTGAGGTATC 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 ATTCATTTCATCTTCAACCTGTTGGAAGATCTCTCCCTAAGAACAACAGTGTGAGGTATC 1035
Query 1179 TACCAGCAATTGGTCCGGTTGTGAAGCAGGATTGCAACCACTGTGGGAAGAAATATAACA 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 TACCAGCAATTGGTCCGGTTGTGAAGCAGGATTGCAACCACTGTGGGAAGAAATATAACA 1095
Query 1239 TGGGTGGACCAATATGGTCTGCTCCAATGCATGATCCAGAATGGGTGACTTCGATATTAA 1298
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1096 TGGGTGGACCAATATGGTCTGCTCCAATGCATGATCAAGAATGGGTGACTTCGATATTAA 1155
Query 1299 ACAGTGTGAAATCCATGAAAGACAGATATCCTGCTTATGACCGGATCTCTGCTGTACTTA 1358
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1156 ACAGTGTAAAATCCATGAAAGACAGATATCCTGCTTATGACCTGATCTCTGCTGTACTTA 1215
Query 1359 CTACAGTCTCCGAGGAATTGCTGGATGTTCCTCTGTTTTTGAGTCTGCATAATCTTTGTG 1418
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1216 CTACAGTCTCCGAGGAATTGCTGGATGTTCCTCTGTTTTTGAGTCTACATAATCTTTGTG 1275
Query 1419 CGACACTAAAGTGTATTTCACCATCAGCTGCAATGTTTCGATCAGCGGTTATTAATGCTA 1478
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 CGACACTAAAGTGCATTTCACCATCAGCTGCAATGTTTCGATCAGCGGTTATTAATGCTA 1335
Query 1479 ATTACCGTATCTCTGGGACTCATGTGAATCCGCTCGGCATGAAAACTGATGCTCCTATGG 1538
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1336 ATTACCGTATCTCGGGGACTCATGTGAATCCGCTTGGCATGAAAACTGATGCTCCTATGG 1395
Query 1539 AGGTTATCTGGGACATTATGCGCTGCTGGGTGAAGAATCATCCCATAAAGGCGCAATCGC 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 AGGTTATCTGGGACATTATGCGCTGCTGGGTGAAGAATCATCCCATAAAGGCGCAATCGC 1455
Query 1599 CTGAACAACCCGGTAGTGTGATCTTGTCCAAAGAACCATCACATGAGGTTGATTTTTCGC 1658
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 CTGAGCAACCCGGTAGTGTGATCTTGTCCAAAGAACCATCACATGAGGTTGATTTTTCGC 1515
Query 1659 GTCACATTGGTTCGCTGAGCAAGGCACAGGCAAAGAAAGTAGCTCGTTTTCTGCCAAATC 1718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 GTCACATTGGTTCGCTGAGCAAGGCACAGGCAAAGAAAGTAGCTCGTTTTCTGCCAAATC 1575
Query 1719 CAGAGAAGCATTGGGGTCCAAAGCTTAGGGCTGGTCGCCAGATTACGAGCAAACATGTAT 1778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 CAGAGAAGCATTGGGGTCCAAAGCTTAGGGCTGGTCGCCAGATTACGAGCAAACATGTAT 1635
Query 1779 CTCTTATTGGTCATGAAGCAGTCAATGGTCATCTTAGCCAACACCATGAAGAACTTAAAG 1838
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1636 CTCTTATTGGTCATGAAGCAGTCAATGGTCATCTTAACCAACACCCTGAAGAACTTAAAG 1695
Query 1839 AAGAAGATGAAGAAGCAGAGCCAGAAGATAATGTCCAAG-ACAAGGTTGATCCAAAACGC 1897
|||| |||||||||||||| ||||||||||||||||| | | ||||||||| ||||||
Sbjct 1696 AAGA---TGAAGAAGCAGAGCAAGAAGATAATGTCCAAGTAGA-GGTTGATCCGAAACGC 1751
Query 1898 CAGAAGACAGCAACAGATAATATTACCTCAACATAATAAGACAAATCACAAAAAGTTT 1955
||||||||| ||||||| |||||| | ||||||| |||||||||| |||| || ||||
Sbjct 1752 CAGAAGACAACAACAGAGAATATTTCATCAACATCATAAGACAAAACACACAACGTTT 1809
> Ahg488427 jgi|Araly1|488427|fgenesh2_kg.6__1561__AT5G15810.1
Length=2114
Score = 1587 bits (859), Expect = 0.0
Identities = 1409/1670 (84%), Gaps = 55/1670 (3%)
Strand=Plus/Plus
Query 160 AGCAATGGAAACGGATCT-GAATGATTATACTGTTATCAAGGAAGGAGAAGCTGAGATTC 218
|||||||||||| ||||| | ||||||||||||| || |||||||| ||||||||| |||
Sbjct 153 AGCAATGGAAACAGATCTCG-ATGATTATACTGTGATTAAGGAAGGGGAAGCTGAGGTTC 211
Query 219 TCATGCACAAGAAGAATCAAGTCTTCTTCAATAAAGCTCAGGTGAACAATAGAGACATGT 278
| |||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 212 TAATGCACAAGAAGAACCAAGTCTTCTTCAACAAAGCTCAGGTTAACAATAGGGACATGT 271
Query 279 CCATTGCTGTTCTAAGGGAATTTCTATCGAAACGCAAGCAAGAGCATGAGGCTAAGTCAT 338
|||||||||| ||||||| |||| |||| ||||||||||||||||||||||| | || ||
Sbjct 272 CCATTGCTGTCCTAAGGGCATTTATATCCAAACGCAAGCAAGAGCATGAGGCGATGTTAT 331
Query 339 CTAAAAGAACTAGACCAGCTTCCAAAGTGATTGAGAAGGATGCT-TCT-GAAGCTTCCAA 396
|||||||| ||||| || || |||||| |||||||||||| | ||| ||| |||||||
Sbjct 332 CTAAAAGAGCTAGATCATCTGGGAAAGTGCTTGAGAAGGATG-TCTCTGGAA-CTTCCAA 389
Query 397 GGAAGAAACTCCTAGC-GAGAACGGT-ATGAATAATGGTGATCACGAA-GTAGCATCTGA 453
|||||||| ||||| | || |||||| | | |||||||| | || || | || | | |
Sbjct 390 GGAAGAAAATCCTA-CTGAAAACGGTGA-GGATAATGGT-AAAACCAACGGAG-AAC--A 443
Query 454 AGATGGACCAAGCTC----TGTATCAAAAGACCCTGCTAAGACAACAGAACG-ATTTGCA 508
|| | | ||| ||| || | |||| || |||| ||||| || | | || ||||
Sbjct 444 CGACGTAACAA-CTCAGGATGGACCAAAGGAAGCTGCCAAGACCGCA-TATGAATCTGCA 501
Query 509 CCTAGAGAACCCAAGCCACCAAAAGTTCTTGAGGCTTTGTCAGCTTCTGGGTTACGGGCT 568
|| |||| ||||||||||| ||| |||||||| |||||||||| |||||||| |||
Sbjct 502 AGAAGGGAACTCAAGCCACCAAGAGTGCTTGAGGCCCTGTCAGCTTCAGGGTTACGTGCT 561
Query 569 CTAAGATATGCACGCGAAATAGAAGGAATTGGTCAGGTTGTGGCGTTGGATAATGATTTA 628
| || ||||| || ||| | |||||||||||||| |||||||| || |||||||| |
Sbjct 562 TTGAGGTATGCTCGTGAAGTTGAAGGAATTGGTCAAGTTGTGGCTTTAGATAATGACCCA 621
Query 629 GCATCGGTCGAAGCTTGCCAGAGAAACATAAAGTTCAATGGCTCAG-TGGCTATTTCAAA 687
|||||||| ||||| |||||| ||||||| ||||||||||| | | || ||| ||||||
Sbjct 622 GCATCGGTTGAAGCCTGCCAGCGAAACATTAAGTTCAATGG-TTTGATGTCTACTTCAAA 680
Query 688 GGTGGAGTCACATCATACCGATGCTCGTGTCCATATGCTTACCCACCCTAAAGAATTTGA 747
|||||||||||||| ||| |||||||||||||||||||| | |||||| ||||| |||||
Sbjct 681 GGTGGAGTCACATCTTACTGATGCTCGTGTCCATATGCTCAGCCACCCAAAAGATTTTGA 740
Query 748 TGTGGTTGATCTTGATCCATATGGAT-CACCATCTATTTTCCTTGACTCGGCTATTCAAT 806
||||||||||||||| |||||||| | | || |||||||||||||| || ||| | ||||
Sbjct 741 TGTGGTTGATCTTGACCCATATGG-TGCGCCGTCTATTTTCCTTGATTCAGCTGTCCAAT 799
Query 807 CAGTCACGGATGGTGGATTGCTAATGTGTACAGCAACTGACATGGCAGTGTTATGTGGTG 866
|||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 800 CAGTTGCCGATGGTGGTTTGCTGATGTGTACAGCAACTGACATGGCAGTGTTATGTGG-G 858
Query 867 G-TAACGGTGAAGTTTGCTATTCCAAATATGGTTCTTACCCATTGAGAGCGAAGTATTGT 925
| |||||| || || ||||||||||||||||| ||||| ||| ||| || ||| ||||||
Sbjct 859 GCTAACGGCGAGGTCTGCTATTCCAAATATGGCTCTTATCCACTGAAAGGGAAATATTGT 918
Query 926 CATGAGATGGCTTTGCGGATCCTCCTTGCCAGCATCGAGAGCCATGCAAACCGCTACAAG 985
||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 919 CATGAGATGGCTTTGAGGATCCTCCTCGCCAGCATCGAGAGCCATGCAAATCGCTACAAG 978
Query 986 CGGTATATTGTTCCGGTGCTATCTGTGCAAATGGATTTCTATGTTCGTGTTTTTGTCCGC 1045
|||||||||||||| || || || || |||||||||||||| ||||||||||||||||||
Sbjct 979 CGGTATATTGTTCCTGTTCTGTCGGTTCAAATGGATTTCTACGTTCGTGTTTTTGTCCGC 1038
Query 1046 GTTTACACCTCGGCGAGTGCAATGAAGAACACTCCATTGAAGCTCTCTTACGTATATCAA 1105
|||||||| ||||||||||||||||||||||||||| | |||||||| || || || |||
Sbjct 1039 GTTTACACTTCGGCGAGTGCAATGAAGAACACTCCACTAAAGCTCTCATATGTCTACCAA 1098
Query 1106 TGCATTGGCTGTGATTCATTTCATCTTCAACCTGTTGGAAGATCTCTCCCTAAGAACAAC 1165
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1099 TGCATTGGTTGTGATTCCTTTCATCTTCAGTCTGTTGGAAGATCTCTCCCTAAGAATAAC 1158
Query 1166 AGTGTGAGGTATCTACCAGCAATTGGTCCGGTTGTGAAGCAGGATTGCAAC-CACTGTGG 1224
||||||||||||||||||| | ||||||| |||| ||||||||| || || |||||
Sbjct 1159 AGTGTGAGGTATCTACCAGGAGTTGGTCCTATTGTTCCTCAGGATTGC-ACTCATTGTGG 1217
Query 1225 GAAGAAATATAACATGGGTGGACCAATATGGTCTGCTCCAATGCATGATCCAGAATGGGT 1284
||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct 1218 AAAGAAATATAACATGGGTGGACCAATATGGTCTGCTCCAATCCACGATCAAGAATGGGT 1277
Query 1285 GACTTCGATATTAAACAGTGTGAAATCCATGAAAGACAGATATCCTGCTTATGACCGGAT 1344
||||||||| ||| |||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 1278 CACTTCGATACTAAGCAGTGTTAAATCCATGAAAGACAGATATCCTGCTTACGACCGAAT 1337
Query 1345 CTCTGCTGTACTTACTACAGTCTCCGAGGAATTGCTGGATGTTCCTCTGTTTTTGAGTCT 1404
| ||| | || | | | |||| ||||||||||| |||||||| ||
Sbjct 1338 -T-TGC-G--CT-------G------A--A-TTGCCAGATGTTCCTCTCTTTTTGAGCCT 1376
Query 1405 GCATAATCTTTGTGCGACACTAAAGTGTATTTCACCATCAGCTGCAATGTTTCGATCAGC 1464
|||| ||| | ||| |||||||| |||| |||||| |||||||| |||||||||||||
Sbjct 1377 TCATAGTCTCTCTGCAACACTAAAATGTACTTCACCGTCAGCTGCTTTGTTTCGATCAGC 1436
Query 1465 GGTTATTAATGCTAATTACCGTATCTCTGGGACTCATGTGAATCCGCTCGGCATGAAAAC 1524
||| || ||||| || |||||| |||||||| | |||||||||||||| || || |||||
Sbjct 1437 GGTAATCAATGCAAAGTACCGTGTCTCTGGGTCCCATGTGAATCCGCTGGGGATTAAAAC 1496
Query 1525 TGATGCTCCTATGGAGGTTATCTGGGACATTATGCGCTGCTGGGTGAAGAATCATCCCAT 1584
||||||||| |||||| ||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 1497 TGATGCTCCAATGGAGATTATCTGGGACATCATGCGGTGCTGGGTGAAAAATCATCCCAT 1556
Query 1585 AAAGGCGCAATCGCCTGAACAACCCGGTAGTGTGAT-CTTGTCCAAAGAACCATCACATG 1643
|||| ||||||| |||||||| ||||| |||||||| || || ||||||||||| |||
Sbjct 1557 AAAGCCGCAATCACCTGAACATCCCGGAAGTGTGATTCTA-TCTAAAGAACCATCTCATC 1615
Query 1644 AGGTTGATTTTTCGCGTCACATTGGTTCGCTGAGCAAGGCACAGGCAAAGAAAGTAGCTC 1703
||| ||| |||||||| ||| | |||||||| ||||| |||||||| ||||||||||| |
Sbjct 1616 AGGCTGACTTTTCGCGCCACGTCGGTTCGCTTAGCAAAGCACAGGCGAAGAAAGTAGCCC 1675
Query 1704 GTTTTCTGCCAAATCCAGAGAAGCATTGGGGTCCAAAGCTTAGGGCTGGTCGC-CAGATT 1762
| ||||| ||||| |||||||||||||||||||| ||| | ||||||||||| || ||
Sbjct 1676 GGTTTCTACCAAACCCAGAGAAGCATTGGGGTCCCAAGATAAGGGCTGGTCGTACA-ATC 1734
Query 1763 ACGAGCAAACATGTATCTCTTATTGGTCATGAAGCAGTCAATGGTCATCT 1812
|| |||||||| ||||| ||| |||||||||||||||| || ||||||||
Sbjct 1735 ACAAGCAAACACGTATCGCTTCTTGGTCATGAAGCAGTTAACGGTCATCT 1784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81208402340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5