BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G02320.1 Length=2158 Score E Sequences producing significant alignments: (Bits) Value Ahg927711 jgi|Araly1|927711|scaffold_300168.1 3105 0.0 Ahg488427 jgi|Araly1|488427|fgenesh2_kg.6__1561__AT5G15810.1 1587 0.0 > Ahg927711 jgi|Araly1|927711|scaffold_300168.1 Length=1810 Score = 3105 bits (1681), Expect = 0.0 Identities = 1760/1798 (98%), Gaps = 5/1798 (0%) Strand=Plus/Plus Query 159 AAGCAATGGAAACGGATCTGAATGATTATACTGTTATCAAGGAAGGAGAAGCTGAGATTC 218 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 16 AAGCAATGGAAACGGATCTGAATGACTATACTGTTATCAAGGAAGGAGAAGCTGAGATTC 75 Query 219 TCATGCACAAGAAGAATCAAGTCTTCTTCAATAAAGCTCAGGTGAACAATAGAGACATGT 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76 TCATGCACAAGAAGAATCAAGTCTTCTTCAATAAAGCTCAGGTGAACAATAGAGACATGT 135 Query 279 CCATTGCTGTTCTAAGGGAATTTCTATCGAAACGCAAGCAAGAGCATGAGGCTAAGTCAT 338 ||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| Sbjct 136 CCATTGCTGTTCTAAGGGAATTTATATCAAAACGCAAGCAAGAGCATGAAGCTAAGTCAT 195 Query 339 CTAAAAGAACTAGACCAGCTTCCAAAGTGATTGAGAAGGATGCTTCTGAAGCTTCCAAGG 398 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 196 CTAAAAGAACTAGACCAGCTTCCAAAGTGATCGAGAAGGATGCTTCTGAAGCTTCCAAGG 255 Query 399 AAGAAACTCCTAGCGAGAACGGTATGAATAATGGTGATCACGAAGTAGCATCTGAAGATG 458 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 256 AAGAAACTCCGAGCAAGAACGGTATGAATAATGGTGATCACGAAGTAGCATCTGAAGATG 315 Query 459 GACCAAGCTCTGTATCAAAAGACCCTGCTAAGACAACAGAACGATTTGCACCTAGAGAAC 518 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316 GACCAAGCTCTGCATCAAAAGACCCTGCTAAGACAACAGAACGATTTGCACCTAGAGAAC 375 Query 519 CCAAGCCACCAAAAGTTCTTGAGGCTTTGTCAGCTTCTGGGTTACGGGCTCTAAGATATG 578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 376 CCAAGCCACCAAAAGTTCTTGAGGCTTTGTCAGCTTCTGGGTTACGGGCTCTAAGATATG 435 Query 579 CACGCGAAATAGAAGGAATTGGTCAGGTTGTGGCGTTGGATAATGATTTAGCATCGGTCG 638 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 436 CACGCGAAATAGAAGGAATTGGTCAGGTTGTGGCGTTGGATAATGATTTAGCATCGGTCG 495 Query 639 AAGCTTGCCAGAGAAACATAAAGTTCAATGGCTCAGTGGCTATTTCAAAGGTGGAGTCAC 698 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 496 AAGCTTGCCAGAGAAACATAAAGTTCAATGGCTCAGTGGCTATTTCAAAGGTGGAGTCAC 555 Query 699 ATCATACCGATGCTCGTGTCCATATGCTTACCCACCCTAAAGAATTTGATGTGGTTGATC 758 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 556 ATCATACCGATGCTCGTGTCCATATGCTTACCCACCCTAAAGAATTTGATGTGGTTGATC 615 Query 759 TTGATCCATATGGATCACCATCTATTTTCCTTGACTCGGCTATTCAATCAGTCACGGATG 818 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 616 TTGATCCATATGGATCACCGTCTATTTTCCTTGACTCGGCTATTCAATCAGTCACGGATG 675 Query 819 GTGGATTGCTAATGTGTACAGCAACTGACATGGCAGTGTTATGTGGTGGTAACGGTGAAG 878 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 676 GTGGATTGCTAATGTGTACAGCAACTGACATGGCAGTGTTATGTGGTGGTAACGGTGAAG 735 Query 879 TTTGCTATTCCAAATATGGTTCTTACCCATTGAGAGCGAAGTATTGTCATGAGATGGCTT 938 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 736 TTTGCTATTCCAAATATGGTTCTTACCCATTGAGAGCGAAGTATTGTCATGAGATGGCTT 795 Query 939 TGCGGATCCTCCTTGCCAGCATCGAGAGCCATGCAAACCGCTACAAGCGGTATATTGTTC 998 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 796 TGCGGATCCTTCTTGCCAGCATCGAGAGCCATGCAAACCGCTACAAGCGGTATATTGTTC 855 Query 999 CGGTGCTATCTGTGCAAATGGATTTCTATGTTCGTGTTTTTGTCCGCGTTTACACCTCGG 1058 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 856 CGGTGCTATCTGTGCAAATGGATTTCTATGTTCGTGTTTTTGTCCGCGTTTACACCTCGG 915 Query 1059 CGAGTGCAATGAAGAACACTCCATTGAAGCTCTCTTACGTATATCAATGCATTGGCTGTG 1118 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 916 CGAGTGCAATGAAGAACACTCCATTGAAACTCTCTTACGTATATCAATGCATTGGTTGTG 975 Query 1119 ATTCATTTCATCTTCAACCTGTTGGAAGATCTCTCCCTAAGAACAACAGTGTGAGGTATC 1178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 976 ATTCATTTCATCTTCAACCTGTTGGAAGATCTCTCCCTAAGAACAACAGTGTGAGGTATC 1035 Query 1179 TACCAGCAATTGGTCCGGTTGTGAAGCAGGATTGCAACCACTGTGGGAAGAAATATAACA 1238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1036 TACCAGCAATTGGTCCGGTTGTGAAGCAGGATTGCAACCACTGTGGGAAGAAATATAACA 1095 Query 1239 TGGGTGGACCAATATGGTCTGCTCCAATGCATGATCCAGAATGGGTGACTTCGATATTAA 1298 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1096 TGGGTGGACCAATATGGTCTGCTCCAATGCATGATCAAGAATGGGTGACTTCGATATTAA 1155 Query 1299 ACAGTGTGAAATCCATGAAAGACAGATATCCTGCTTATGACCGGATCTCTGCTGTACTTA 1358 ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1156 ACAGTGTAAAATCCATGAAAGACAGATATCCTGCTTATGACCTGATCTCTGCTGTACTTA 1215 Query 1359 CTACAGTCTCCGAGGAATTGCTGGATGTTCCTCTGTTTTTGAGTCTGCATAATCTTTGTG 1418 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1216 CTACAGTCTCCGAGGAATTGCTGGATGTTCCTCTGTTTTTGAGTCTACATAATCTTTGTG 1275 Query 1419 CGACACTAAAGTGTATTTCACCATCAGCTGCAATGTTTCGATCAGCGGTTATTAATGCTA 1478 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1276 CGACACTAAAGTGCATTTCACCATCAGCTGCAATGTTTCGATCAGCGGTTATTAATGCTA 1335 Query 1479 ATTACCGTATCTCTGGGACTCATGTGAATCCGCTCGGCATGAAAACTGATGCTCCTATGG 1538 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1336 ATTACCGTATCTCGGGGACTCATGTGAATCCGCTTGGCATGAAAACTGATGCTCCTATGG 1395 Query 1539 AGGTTATCTGGGACATTATGCGCTGCTGGGTGAAGAATCATCCCATAAAGGCGCAATCGC 1598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1396 AGGTTATCTGGGACATTATGCGCTGCTGGGTGAAGAATCATCCCATAAAGGCGCAATCGC 1455 Query 1599 CTGAACAACCCGGTAGTGTGATCTTGTCCAAAGAACCATCACATGAGGTTGATTTTTCGC 1658 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1456 CTGAGCAACCCGGTAGTGTGATCTTGTCCAAAGAACCATCACATGAGGTTGATTTTTCGC 1515 Query 1659 GTCACATTGGTTCGCTGAGCAAGGCACAGGCAAAGAAAGTAGCTCGTTTTCTGCCAAATC 1718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1516 GTCACATTGGTTCGCTGAGCAAGGCACAGGCAAAGAAAGTAGCTCGTTTTCTGCCAAATC 1575 Query 1719 CAGAGAAGCATTGGGGTCCAAAGCTTAGGGCTGGTCGCCAGATTACGAGCAAACATGTAT 1778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1576 CAGAGAAGCATTGGGGTCCAAAGCTTAGGGCTGGTCGCCAGATTACGAGCAAACATGTAT 1635 Query 1779 CTCTTATTGGTCATGAAGCAGTCAATGGTCATCTTAGCCAACACCATGAAGAACTTAAAG 1838 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 1636 CTCTTATTGGTCATGAAGCAGTCAATGGTCATCTTAACCAACACCCTGAAGAACTTAAAG 1695 Query 1839 AAGAAGATGAAGAAGCAGAGCCAGAAGATAATGTCCAAG-ACAAGGTTGATCCAAAACGC 1897 |||| |||||||||||||| ||||||||||||||||| | | ||||||||| |||||| Sbjct 1696 AAGA---TGAAGAAGCAGAGCAAGAAGATAATGTCCAAGTAGA-GGTTGATCCGAAACGC 1751 Query 1898 CAGAAGACAGCAACAGATAATATTACCTCAACATAATAAGACAAATCACAAAAAGTTT 1955 ||||||||| ||||||| |||||| | ||||||| |||||||||| |||| || |||| Sbjct 1752 CAGAAGACAACAACAGAGAATATTTCATCAACATCATAAGACAAAACACACAACGTTT 1809 > Ahg488427 jgi|Araly1|488427|fgenesh2_kg.6__1561__AT5G15810.1 Length=2114 Score = 1587 bits (859), Expect = 0.0 Identities = 1409/1670 (84%), Gaps = 55/1670 (3%) Strand=Plus/Plus Query 160 AGCAATGGAAACGGATCT-GAATGATTATACTGTTATCAAGGAAGGAGAAGCTGAGATTC 218 |||||||||||| ||||| | ||||||||||||| || |||||||| ||||||||| ||| Sbjct 153 AGCAATGGAAACAGATCTCG-ATGATTATACTGTGATTAAGGAAGGGGAAGCTGAGGTTC 211 Query 219 TCATGCACAAGAAGAATCAAGTCTTCTTCAATAAAGCTCAGGTGAACAATAGAGACATGT 278 | |||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||| Sbjct 212 TAATGCACAAGAAGAACCAAGTCTTCTTCAACAAAGCTCAGGTTAACAATAGGGACATGT 271 Query 279 CCATTGCTGTTCTAAGGGAATTTCTATCGAAACGCAAGCAAGAGCATGAGGCTAAGTCAT 338 |||||||||| ||||||| |||| |||| ||||||||||||||||||||||| | || || Sbjct 272 CCATTGCTGTCCTAAGGGCATTTATATCCAAACGCAAGCAAGAGCATGAGGCGATGTTAT 331 Query 339 CTAAAAGAACTAGACCAGCTTCCAAAGTGATTGAGAAGGATGCT-TCT-GAAGCTTCCAA 396 |||||||| ||||| || || |||||| |||||||||||| | ||| ||| ||||||| Sbjct 332 CTAAAAGAGCTAGATCATCTGGGAAAGTGCTTGAGAAGGATG-TCTCTGGAA-CTTCCAA 389 Query 397 GGAAGAAACTCCTAGC-GAGAACGGT-ATGAATAATGGTGATCACGAA-GTAGCATCTGA 453 |||||||| ||||| | || |||||| | | |||||||| | || || | || | | | Sbjct 390 GGAAGAAAATCCTA-CTGAAAACGGTGA-GGATAATGGT-AAAACCAACGGAG-AAC--A 443 Query 454 AGATGGACCAAGCTC----TGTATCAAAAGACCCTGCTAAGACAACAGAACG-ATTTGCA 508 || | | ||| ||| || | |||| || |||| ||||| || | | || |||| Sbjct 444 CGACGTAACAA-CTCAGGATGGACCAAAGGAAGCTGCCAAGACCGCA-TATGAATCTGCA 501 Query 509 CCTAGAGAACCCAAGCCACCAAAAGTTCTTGAGGCTTTGTCAGCTTCTGGGTTACGGGCT 568 || |||| ||||||||||| ||| |||||||| |||||||||| |||||||| ||| Sbjct 502 AGAAGGGAACTCAAGCCACCAAGAGTGCTTGAGGCCCTGTCAGCTTCAGGGTTACGTGCT 561 Query 569 CTAAGATATGCACGCGAAATAGAAGGAATTGGTCAGGTTGTGGCGTTGGATAATGATTTA 628 | || ||||| || ||| | |||||||||||||| |||||||| || |||||||| | Sbjct 562 TTGAGGTATGCTCGTGAAGTTGAAGGAATTGGTCAAGTTGTGGCTTTAGATAATGACCCA 621 Query 629 GCATCGGTCGAAGCTTGCCAGAGAAACATAAAGTTCAATGGCTCAG-TGGCTATTTCAAA 687 |||||||| ||||| |||||| ||||||| ||||||||||| | | || ||| |||||| Sbjct 622 GCATCGGTTGAAGCCTGCCAGCGAAACATTAAGTTCAATGG-TTTGATGTCTACTTCAAA 680 Query 688 GGTGGAGTCACATCATACCGATGCTCGTGTCCATATGCTTACCCACCCTAAAGAATTTGA 747 |||||||||||||| ||| |||||||||||||||||||| | |||||| ||||| ||||| Sbjct 681 GGTGGAGTCACATCTTACTGATGCTCGTGTCCATATGCTCAGCCACCCAAAAGATTTTGA 740 Query 748 TGTGGTTGATCTTGATCCATATGGAT-CACCATCTATTTTCCTTGACTCGGCTATTCAAT 806 ||||||||||||||| |||||||| | | || |||||||||||||| || ||| | |||| Sbjct 741 TGTGGTTGATCTTGACCCATATGG-TGCGCCGTCTATTTTCCTTGATTCAGCTGTCCAAT 799 Query 807 CAGTCACGGATGGTGGATTGCTAATGTGTACAGCAACTGACATGGCAGTGTTATGTGGTG 866 |||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||| | Sbjct 800 CAGTTGCCGATGGTGGTTTGCTGATGTGTACAGCAACTGACATGGCAGTGTTATGTGG-G 858 Query 867 G-TAACGGTGAAGTTTGCTATTCCAAATATGGTTCTTACCCATTGAGAGCGAAGTATTGT 925 | |||||| || || ||||||||||||||||| ||||| ||| ||| || ||| |||||| Sbjct 859 GCTAACGGCGAGGTCTGCTATTCCAAATATGGCTCTTATCCACTGAAAGGGAAATATTGT 918 Query 926 CATGAGATGGCTTTGCGGATCCTCCTTGCCAGCATCGAGAGCCATGCAAACCGCTACAAG 985 ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 919 CATGAGATGGCTTTGAGGATCCTCCTCGCCAGCATCGAGAGCCATGCAAATCGCTACAAG 978 Query 986 CGGTATATTGTTCCGGTGCTATCTGTGCAAATGGATTTCTATGTTCGTGTTTTTGTCCGC 1045 |||||||||||||| || || || || |||||||||||||| |||||||||||||||||| Sbjct 979 CGGTATATTGTTCCTGTTCTGTCGGTTCAAATGGATTTCTACGTTCGTGTTTTTGTCCGC 1038 Query 1046 GTTTACACCTCGGCGAGTGCAATGAAGAACACTCCATTGAAGCTCTCTTACGTATATCAA 1105 |||||||| ||||||||||||||||||||||||||| | |||||||| || || || ||| Sbjct 1039 GTTTACACTTCGGCGAGTGCAATGAAGAACACTCCACTAAAGCTCTCATATGTCTACCAA 1098 Query 1106 TGCATTGGCTGTGATTCATTTCATCTTCAACCTGTTGGAAGATCTCTCCCTAAGAACAAC 1165 |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||| Sbjct 1099 TGCATTGGTTGTGATTCCTTTCATCTTCAGTCTGTTGGAAGATCTCTCCCTAAGAATAAC 1158 Query 1166 AGTGTGAGGTATCTACCAGCAATTGGTCCGGTTGTGAAGCAGGATTGCAAC-CACTGTGG 1224 ||||||||||||||||||| | ||||||| |||| ||||||||| || || ||||| Sbjct 1159 AGTGTGAGGTATCTACCAGGAGTTGGTCCTATTGTTCCTCAGGATTGC-ACTCATTGTGG 1217 Query 1225 GAAGAAATATAACATGGGTGGACCAATATGGTCTGCTCCAATGCATGATCCAGAATGGGT 1284 ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| Sbjct 1218 AAAGAAATATAACATGGGTGGACCAATATGGTCTGCTCCAATCCACGATCAAGAATGGGT 1277 Query 1285 GACTTCGATATTAAACAGTGTGAAATCCATGAAAGACAGATATCCTGCTTATGACCGGAT 1344 ||||||||| ||| |||||| ||||||||||||||||||||||||||||| ||||| || Sbjct 1278 CACTTCGATACTAAGCAGTGTTAAATCCATGAAAGACAGATATCCTGCTTACGACCGAAT 1337 Query 1345 CTCTGCTGTACTTACTACAGTCTCCGAGGAATTGCTGGATGTTCCTCTGTTTTTGAGTCT 1404 | ||| | || | | | |||| ||||||||||| |||||||| || Sbjct 1338 -T-TGC-G--CT-------G------A--A-TTGCCAGATGTTCCTCTCTTTTTGAGCCT 1376 Query 1405 GCATAATCTTTGTGCGACACTAAAGTGTATTTCACCATCAGCTGCAATGTTTCGATCAGC 1464 |||| ||| | ||| |||||||| |||| |||||| |||||||| ||||||||||||| Sbjct 1377 TCATAGTCTCTCTGCAACACTAAAATGTACTTCACCGTCAGCTGCTTTGTTTCGATCAGC 1436 Query 1465 GGTTATTAATGCTAATTACCGTATCTCTGGGACTCATGTGAATCCGCTCGGCATGAAAAC 1524 ||| || ||||| || |||||| |||||||| | |||||||||||||| || || ||||| Sbjct 1437 GGTAATCAATGCAAAGTACCGTGTCTCTGGGTCCCATGTGAATCCGCTGGGGATTAAAAC 1496 Query 1525 TGATGCTCCTATGGAGGTTATCTGGGACATTATGCGCTGCTGGGTGAAGAATCATCCCAT 1584 ||||||||| |||||| ||||||||||||| ||||| ||||||||||| ||||||||||| Sbjct 1497 TGATGCTCCAATGGAGATTATCTGGGACATCATGCGGTGCTGGGTGAAAAATCATCCCAT 1556 Query 1585 AAAGGCGCAATCGCCTGAACAACCCGGTAGTGTGAT-CTTGTCCAAAGAACCATCACATG 1643 |||| ||||||| |||||||| ||||| |||||||| || || ||||||||||| ||| Sbjct 1557 AAAGCCGCAATCACCTGAACATCCCGGAAGTGTGATTCTA-TCTAAAGAACCATCTCATC 1615 Query 1644 AGGTTGATTTTTCGCGTCACATTGGTTCGCTGAGCAAGGCACAGGCAAAGAAAGTAGCTC 1703 ||| ||| |||||||| ||| | |||||||| ||||| |||||||| ||||||||||| | Sbjct 1616 AGGCTGACTTTTCGCGCCACGTCGGTTCGCTTAGCAAAGCACAGGCGAAGAAAGTAGCCC 1675 Query 1704 GTTTTCTGCCAAATCCAGAGAAGCATTGGGGTCCAAAGCTTAGGGCTGGTCGC-CAGATT 1762 | ||||| ||||| |||||||||||||||||||| ||| | ||||||||||| || || Sbjct 1676 GGTTTCTACCAAACCCAGAGAAGCATTGGGGTCCCAAGATAAGGGCTGGTCGTACA-ATC 1734 Query 1763 ACGAGCAAACATGTATCTCTTATTGGTCATGAAGCAGTCAATGGTCATCT 1812 || |||||||| ||||| ||| |||||||||||||||| || |||||||| Sbjct 1735 ACAAGCAAACACGTATCGCTTCTTGGTCATGAAGCAGTTAACGGTCATCT 1784 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81208402340 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5