BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02340.1
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477467 jgi|Araly1|477467|fgenesh2_kg.3__168__AT3G02340.1 1893 0.0
> Ahg477467 jgi|Araly1|477467|fgenesh2_kg.3__168__AT3G02340.1
Length=1349
Score = 1893 bits (1025), Expect = 0.0
Identities = 1265/1372 (92%), Gaps = 52/1372 (4%)
Strand=Plus/Plus
Query 40 CGAAGCCCGATTCCGCAATCAACCTTGAAGAAGAGGCTGAAGGCGACGGTGTAGCCGTAG 99
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 8 CGAAGCCCGGTTCCGCAATCAACCTTGAAGAAGAGGCGGAAGGCGACGGTGTAGCCGTAG 67
Query 100 ACGATCCGATTTTCATACCGGAGACCACGAACTTACTCGTCCGTTACTCGCCATTCGACG 159
||||| ||||||||||||||||| |||||||||| |||||||||||||| | |||||||
Sbjct 68 ACGATTCGATTTTCATACCGGAGGCCACGAACTTGCTCGTCCGTTACTCTTCGTTCGACG 127
Query 160 ACAGGGACATCGATTGCAATCCTTATTTCCCTTTCACAGGCCCGATTTCAGATTCTGGAT 219
||||||||||||||||||||||||||||||||||| || | || || | | | |
Sbjct 128 ACAGGGACATCGATTGCAATCCTTATTTCCCTTTCTCA-G---GA--GCA-A-T-T---T 175
Query 220 CAGGTTCTTACTCGGATTCTGAGCCCGATCCCAACAGCTGTCCCATCGATTTCTTCGATC 279
||||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||
Sbjct 176 CAGGTTCTTACTCGGATTCAGAGCCAGATCCCTACAGCTGTCCCATTGATTTCTTCGATC 235
Query 280 GAGATTCTTCCGATGTTGACGTGGCTGAGTACTTGGAATCAGG-AGGGCTGACCGCCGGT 338
||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||
Sbjct 236 GAGATTCTTCCGATGTTGACGCGGCTGAGTACTTGGAATC-GGAAGGGCTGACCGCCGGT 294
Query 339 GATTATAATATTTGGGGCTTTTATGACCCCAAGGAAGACGAGG-A-A-GAGGAGGAGATA 395
|||| |||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 295 GATTTTAATATTTGGGGCTTTTATGACCCCAAGGAAGACGAGGAAGAGGAGGAGGAGATA 354
Query 396 GTTTT---G----G--G-G-A-CT---TCCGGGTCGGATCTGCAACCGGGTGATTCAGGG 440
||||| | | | | | || ||||||||||||| ||||||||||||||||| |
Sbjct 355 GTTTTGGGGACTAGATGTGTATCTGGATCCGGGTCGGATCAGCAACCGGGTGATTCAGAG 414
Query 441 GAGCAAGGGCTTCGAGTGACCGGTATCGATTCAGATTCCGATTGTGAAGATGGCGTGTTT 500
|||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||
Sbjct 415 GAGCAAGGGCTTCGAGTGACCGGTATCGATTCCGATTCCGATTATGAAGAAGGCGTGTTT 474
Query 501 GATTTTATCTCTGAGGATAGTAGCGGGAATAGGGGAAATGATTCGGGTCGGGTCGAGGTT 560
||||||| ||| ||||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 475 GATTTTACCTCGGAGGATAGTAGTGGGAATAGTGCAAATGATTCGGGTCGGGTCGAGGTT 534
Query 561 GGTACGGGTCTTCCTCCTGTGTGGGATCATCTCTTCGGAGAGGGAACCGTGTTGGCTGAT 620
|||||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 535 GGTACGGGTCTTCCCCCTGTCTGGGATAACCTCTTCGGAGAGGGAACCGTGTTGGCTGAT 594
Query 621 GAAGAATGGGAGGAGGTGCAGAACGCGATTAACTGGACAGCTTTTAGTGGACCCGAAGAT 680
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 595 GAAGAATGGGAGGAGGTGCAGAACGCGATTAACTGGACAGCTTTTAGTGGTCCCG-A-A- 651
Query 681 GAGGACGAAGAAGATGAATTGTCTTCACTATCAAGGGATGATGAAGAAGAAGATCATGAA 740
|| | |||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 652 GA--A-GAAGAAGAAGAATTGTCTTCACTATCAAGGGATGAT---GAAGAAGATCATGAA 705
Query 741 CTGGACTGGCAGGTTTTGTTAACTGTTAACAATGTTGTTAATTATATCGAACAAGCTGAA 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 CTGGACTGGCAGGTTTTGTTAACTGTTAACAATGTTGTTAATTATATCGAACAAGCTGAA 765
Query 801 GGAATCATGCTAAACCCTGATGATATCGATCCGGATTATTACCTGTATCTATCTGGTTTG 860
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 766 GGAATCATGCTAAACCCTGATGATATCGATCCGAATTATTACCTGTATCTATCTAGTTTG 825
Query 861 GATGAATTTGATGAAAATCATAGTGGACATTATGATGCTGATGCTATTCTTGGGCAAATG 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GATGAATTTGATGAAAATCATAGTGGACATTATGATGCTGATGCTATTCTTGGGCAAATG 885
Query 921 TTTGATGACGAGACTGGAATCAGGGGAAATCCTCCAGCAGCCAAAAGTGTAATTCAGGAT 980
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 886 TTTGACAACGAGACTGGAATCAGGGGAAATCCTCCGGCAGCCAAAAGTGTAATTCAGGAT 945
Query 981 CTTCCGGTTGTGGAGCTTGCTGTGGAAGAGTTAGACAAAGGGAACAAT-GTTTGTGCGGT 1039
||||| |||||||||||| | | ||||| |||| |||||||||||| | |||||||||||
Sbjct 946 CTTCCAGTTGTGGAGCTTACAGCGGAAGTGTTAAACAAAGGGAACA-TCGTTTGTGCGGT 1004
Query 1040 ATGCAAAGATGAAATGTTAGTGGAGGAGAAAGTAAGGAGGCTTCCTTGTAGTCATTTCTA 1099
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1005 ATGCAAAGATGAAATGGTAGTGGAAGAGAAAGTAAGGAGGCTTCCTTGTAGTCATTTCTA 1064
Query 1100 TCATGGAGAGTGTATCATACCTTGGTTGGGGATAAGGAATACTTGCCCGGTTTGTCGGTA 1159
||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1065 TCATGGAGAGTGTATTATGCCTTGGTTGGGGATAAGGAATACTTGTCCGGTTTGTCGGTA 1124
Query 1160 TGAGCTGCCTACTGATGATCTTGAGTATGAAAGACATAAGAGCTCAGAAAGGGGCGATAC 1219
|||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1125 TGAGCTGCGTACTGATGATCTTGAGTATGAAAGGCATAAGAGCTCAGAAAGGAGCGATAC 1184
Query 1220 TGGTTTGGCAAGGAACGTGTTGCCGGGTAGATATAGTTAATTGAATATTTGAAGTGATCT 1279
|||||||| ||||||| | | ||||||||||||||||||||||||| || ||||| ||||
Sbjct 1185 TGGTTTGGTAAGGAAC-T-T-GCCGGGTAGATATAGTTAATTGAAT-TT-GAAGT-ATCT 1238
Query 1280 ATTCTTCAAGTTAATAGACATGGTTTCAGAGGCAAGATCCTTGAACCACTTTGTTT-ATG 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1239 GTTCTTCAAGTTAATAGACATGGTTTCAGAGGCAAGATCCTTGAACCACTTTGTTTTATG 1298
Query 1339 GTAAGCACTTATCGTGAATGTGATAATGTTTAA-GTTGTATATATTCCTTTT 1389
||||| |||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 1299 GTAAGTACTTATCGTGAATGTGATAATGCT-AATGTTGTATATATTCCTTTT 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5