BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02350.1
Length=2224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477468 jgi|Araly1|477468|fgenesh2_kg.3__169__AT3G02350.1 3387 0.0
> Ahg477468 jgi|Araly1|477468|fgenesh2_kg.3__169__AT3G02350.1
Length=2142
Score = 3387 bits (1834), Expect = 0.0
Identities = 2051/2153 (95%), Gaps = 25/2153 (1%)
Strand=Plus/Plus
Query 77 GTGTATTCTTCACTAAATGTTTGAGATCTATCCGTCACACTCCAGAGGTTAAACTCAGTC 136
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 GTGTATTCTTCACTAAATGTTTGAGATCTATCCGTCACACTCCAGAGGTT-AACTCAGTC 59
Query 137 ATCTGTCT-TTGG-GGAGGA-CAAGCAAGAACCTCACCGACGATTCCATACCAAACAAAT 193
|||||||| | || ||| | ||||||||||||||||||||||||| | |||||| ||||
Sbjct 60 ATCTGTCTCTGGGAGGACAAGCAAGCAAGAACCTCACCGACGATTCGAAACCAAA-AAAT 118
Query 194 TCCCGATCTGGAAACAACTGACCTGTGAAGGTGAAGTGTATCGCTGGAAATGGCGGTGGC 253
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 119 TCCCGATCTGGAAACAACTGACCTGTGAAGGTGAAGTGTATCGGTGGAAATGGCGGTGGC 178
Query 254 CTTCCGTGGAGGCCGGGGAGGCGTCGGATCCGGCCAATCTACCGGACTTCGTAGTTTCTT 313
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CTTCCGTGGAGGCCGGGGCGGCGTCGGATCCGGCCAATCTACCGGACTTCGTAGTTTCTT 238
Query 314 CTCCTACCGGATCTTTATCTCCGCTTTGTTCTCTTTTCTCTTCCTCGCCACTTTCTCCGT 373
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 239 CTCCTACCGGATCTTTATCTCCGCTTTGTTCTCTTTTCTCTTCCTTGCCACCTTCTCCGT 298
Query 374 CGTTCTTAACTCCTCTCGTCATCAGCCTCATCAGGATCATACATTGCCGAGTATGGGCAA 433
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 299 TGTTCTTAACTCTTCTCGTCATCAACCTCATCAGGATCATACATTGCCGAGTATGGGAAA 358
Query 434 CGCATATATGCAGAGGACGTTTTTGGCTTTGCAATCGGATCCATTGAAAACTAGGTTGGA 493
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 359 CGCATATATGCAGAGGACGTTTTTGGCTTTGCAATCGGATCCATTGAAAACAAGGTTGGA 418
Query 494 TCTGATACACAAGCAAGCCATTGATCATTTGACACTGGTGAATGCGTATGCTGCTTACGC 553
|||||||||||||||||||| ||||||| | ||||||||||||||||||||||| |||||
Sbjct 419 TCTGATACACAAGCAAGCCACTGATCATCTCACACTGGTGAATGCGTATGCTGCGTACGC 478
Query 554 TAGGAAGCTAAAGCTTGATGCTTCTAAGCAGCTTAAGCTCTTCGAAGATTTGGCTATCAA 613
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 479 TAGGAAGCTAAAGCTTGATGCTTCTAAGCAGCTTAAGCTGTTTGAAGATTTGGCTATCAA 538
Query 614 CTTCTCGGATTTGCAGTCGAAACCTGGTTTGAAATCTGCTGTGTCTGATAATGGTAATGC 673
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 539 CTTCTCGGATTTGCAGTCGAAACCTGGCTTGAAATCTGCTGTGTCTGATAATGGTTATGC 598
Query 674 TCTTGAGGAGGATTCGTTTAGGCAGCTTGAGAAAGAAGTGAAGGATAAGGTGAAGACAGC 733
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 599 TCTTGAGGAGGATTCGTTTAGGCAGCTTGAGAAAGAAGTGAAAGATAAGGTGAAGACAGC 658
Query 734 GAGGATGATGATCGTTGAGTCTAAAGAGAGTTATGATACACAGCTTAAAATCCAGAAGTT 793
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 659 GAGGATGATGATCGTTGAGTCTAAAGAGAGTTATGATACACAGCTTAAGATCCAGAAGTT 718
Query 794 GAAAGATACAATCTTTGCTGTCCAAGAACAGTTGACAAAGGCTAAGAAAAACGGTGCGGT 853
||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 719 GAAAGATACAATCTTTGCTGTCCAAGAACAGTTGACAAAAGCTAAGAAAAACGGCGCTGT 778
Query 854 TGCTAGCTTGATTTCAGCCAAGTCGGTTCCTAAAAGTCTTCATTGTTTGGCCATGAGGCT 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TGCTAGCTTGATTTCAGCCAAGTCGGTTCCTAAAAGTCTTCATTGTTTGGCCATGAGGCT 838
Query 914 TGTAGGAGAGAGGATCTCTAATCCTGAGAAGTACAAGGATGCTCCACCTGACCCAGCCGC 973
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 839 TGTAGGAGAGAGGATCTCAAATCCTGACAAGTACAAGGATGCTCCTCCTGACCCAGCCGC 898
Query 974 AGAGGATCCAACTCTTTACCACTATGCGATTTTCTCTGATAATGTCATTGCTGTGTCTGT 1033
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 899 GGAGGATCCAACTCTTTACCACTATGCGATTTTCTCTGATAACGTGATTGCTGTGTCTGT 958
Query 1034 TGTGGTGAGATCGGTTGTGATGAACGCTGAGGAGCCATGGAAGCATGTCTTCCATGTGGT 1093
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 959 TGTGGTGAGATCGGTTGTGATGAACGCCGAGGAGCCATGGAAGCATGTCTTCCATGTGGT 1018
Query 1094 GACAGATCGGATGAATCTCGCAGCCATGAAGGTGTGGTTTAAGATGCGTCCTTTGGACCG 1153
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1019 GACCGATCGGATGAATCTTGCAGCCATGAAGGTCTGGTTTAAGATGCGTCCTTTGGACCG 1078
Query 1154 TGGTGCCCATGTTGAGATTAAATCCGTGGAGGATTTCAAGTTCTTAAACTCTTCCTATGC 1213
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1079 TGGTGCCCATGTTGAGATCAAATCCGTGGAGGATTTCAAGTTCTTAAACTCTTCGTATGC 1138
Query 1214 GCCGGTCTTGAGGCAGCTTGAGTCTGCCAAGTTGCAGAAGTTTTACTTTGAGAATCAAGC 1273
||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1139 ACCGGTTTTGAGGCAGCTCGAGTCTGCCAAGTTGCAAAAGTTTTACTTCGAGAACCAAGC 1198
Query 1274 TGAGAACGCAACTAAAGATTCACATAACCTCAAGTTCAAGAACCCCAAGTATCTCTCGAT 1333
||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 1199 TGAGAACGCAACTAAAGATTCCCATAACCTCAAGTTCAAGAACCCGAAATATCTCTCGAT 1258
Query 1334 GTTGAACCATCTCAGATTTTACTTACCAGAGATGTATCCGAAGCTGAATAAGATTTTGTT 1393
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1259 GTTGAACCATCTCAGATTTTACTTACCAGAGATGTATCCAAAGCTTAATAAGATTTTGTT 1318
Query 1394 CTTGGACGATGATGTTGTGGTGCAGAAAGACGTGACTGGTTTATGGAAAATCAACTTGGA 1453
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1319 CTTGGACGATGATGTTGTGGTGCAGAAAGACGTGACAGGTTTATGGAAAATCAACTTGGA 1378
Query 1454 TGGCAAGGTGAATGGAGCCGTTGAGACATGTTTTGGTTCTTTTCATCGATATGGTCAATA 1513
|||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1379 TGGCAAGGTGAATGGAGCTGTTGAGACATGCTTTGGTTCTTTTCACCGATATGGTCAATA 1438
Query 1514 CTTAAACTTCTCTCATCCTTTGATCAAAGAGAACTTTAACCCCAGTGCCTGTGCTTGGGC 1573
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1439 CTTAAACTTCTCTCATCCTTTGATCAAAGAGAGCTTTAACCCCAATGCCTGTGCTTGGGC 1498
Query 1574 CTTTGGAATGAACATATTCGATCTCAATGCCTGGAGACGCGAGAAGTGCACCGATCAATA 1633
|||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 1499 CTTTGGAATGAATATATTCGATCTCAATGCCTGGAGGCGCGAGAAATGCACTGATCAATA 1558
Query 1634 CCATTACTGGCAGAACCTGAATGAAGACAGAACTCTCTGGAAATTGGGAACTCTACCTCC 1693
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 CCATTACTGGCAGAACTTGAATGAAGACAGAACTCTCTGGAAATTGGGAACTCTACCTCC 1618
Query 1694 GGGATTGATCACATTCTATTCAAAGACGAAATCATTGGACAAATCATGGCATGTACTTGG 1753
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1619 GGGGTTGATCACATTCTATTCAAAGACGAAATCATTGGACAAATCATGGCATGTGCTTGG 1678
Query 1754 GTTAGGCTATAACCCGGGAGTGAGCATGGACGAAATCAGAAATGCAGGAGTGATTCATTA 1813
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 GTTAGGCTACAACCCGGGAGTGAGCATGGACGAAATCAGAAATGCAGGAGTGATTCATTA 1738
Query 1814 CAATGGAAACATGAAACCGTGGCTAGACATTGCGATGAACCAATACAAGTCTCTCTGGAC 1873
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1739 CAATGGAAACATGAAACCGTGGCTTGACATTGCGATGAACCAATACAAGTCTCTCTGGAC 1798
Query 1874 TAAATATGTTGATAACGAAATGGAGTTTGTGCAGATGTGCAATTTTGGTCTCTAAAGAGA 1933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 TAAATATGTTGATAACGAAATGGAGTTTGTGCAGATGTGCAATTTTGGTCTCTAAAGAGA 1858
Query 1934 GAACGATGAAAACAAAC-AAACCGGAAAGAGGAAAAAATAGG-GAGAAGAGGTAACCTCG 1991
|| || | ||| |||| ||||||||||||||||||| | | |||||||||||||||||
Sbjct 1859 GAGCGGCGGAAA-AAACCAAACCGGAAAGAGGAAAAA-T-GCAGAGAAGAGGTAACCTCG 1915
Query 1992 GATCGATGTGTTTCTGTCTTTCTCGGCATTCTTTAACTGATGATACGTTT-ATCTTTATA 2050
|||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1916 GATCGATGTGTTGA-GTCTTTCTGGGCATTCTTTAACTGATGATACGTTTTATCTTTATA 1974
Query 2051 TAGGGTTACaaaaaaaaaGAAGCATTTTGCTTGTTATTTCT---GTCATAGTTTTGGTCT 2107
||||||||||||||| | | |||||||||||||||||| |||||||||| |||||
Sbjct 1975 TAGGGTTACAAAAAA---G--GTATTTTGCTTGTTATTTCTTCTGTCATAGTTTCGGTCT 2029
Query 2108 TTATTTTTATTTTGTAAACTCTTCACAGCAATATGTTCTCCCAAGCTACAATGTCT-T-- 2164
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2030 TTATTTTTAATTTGTAAACTCTTCACAGCAATATGTTCTCCCAAGCTACAATGTCTCTCT 2089
Query 2165 --GTTGTCTTTATTTCATACTTGTCTGCCTTAAGAATCATATAGAAGAAACTC 2215
||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2090 TTGTTGTCTTTCTTTCATACTTGTCTGCCTTAAGAATCATATAGAAGAAACTC 2142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83722358510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5