BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02370.2
Length=751
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317116 jgi|Araly1|317116|fgenesh1_pm.C_scaffold_3000132 959 0.0
Ahg486180 jgi|Araly1|486180|fgenesh2_kg.5__2172__AT3G57360.1 621 2e-177
> Ahg317116 jgi|Araly1|317116|fgenesh1_pm.C_scaffold_3000132
Length=759
Score = 959 bits (519), Expect = 0.0
Identities = 599/636 (94%), Gaps = 11/636 (2%)
Strand=Plus/Plus
Query 34 GAAAACGAAGCTGGTTTACTATGCTATGATGACGAAGAATATCAATTTGGTGGTCCAGCT 93
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 25 GAAAAAGAAGCTGGTTTACTATGCTATGATGACGAAGAATATCAATTTGGTGGTTCAG-T 83
Query 94 -CCCAAATTACAATTCAGAGTAGGATCCTCCAAGGCTCGTTGGAATGCTGAATTAGGATT 152
|||||||||||||||||||||||||| |||||||||||||||| ||||| | | |
Sbjct 84 GCCCAAATTACAATTCAGAGTAGGATCTTCCAAGGCTCGTTGGATTGCTG----A--A-T 136
Query 153 TAGGAATGGCCGAAGTTGAGGTCAAAAGGGGTAAACTTTGGACGACAACTGGAATTATCC 212
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 137 TAGGAATGGCTGAAGTTGAGGTCAAAAGGGGGAAACTTTGGACGACAACTGGAATTATCC 196
Query 213 GTACCGGAAAAACATATTGCTTCATAGAAGAGGCTCTGTATTTGAGTGAAATTGGAGAGT 272
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 197 GTACCGGAAAAACATTTTGTTTCATAGAAGAGGCTCTGTATTTGAGTGAAATTGGAGAGT 256
Query 273 TGCAGCTCTTGGGTGATGAGGATGACGTAGTGATTTCATTGAAGGACTTGTATGGGGAAA 332
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 257 TGCAGCTCTTGGGTGATGAGGATGACGTAGTGATCTCACTGAAGGACTTGTATGGGGAAA 316
Query 333 TAGCGGAGGGAAAATATGGCTGCTGTTGGGAAAACTACGAGGTTTATAGATACTTAAAGG 392
| || |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 317 TTGCAGAGGGAAAATGTGGCTGCTGTTGGGAAAACTATGAGGTTTATAGATACTTAAAGG 376
Query 393 GTCTTGGTTACATTCTAGGCAGACATGGAGTTCCTTGGACTACAAAATATGCTGTGAATA 452
|||| ||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||
Sbjct 377 GTCTAGGTTACATTCTAGGCAGGCATGGAGTTCCTTGGACTACAAAACATGTTGTGAATA 436
Query 453 CTACACCAAGTGATGAAGATGAGTCACTTTGTGCTGCAGAATTTT-TCCAAGACAGAGAC 511
||||||||||||||||||||| |||||||||||||| |||||||| || |||||| ||||
Sbjct 437 CTACACCAAGTGATGAAGATGGGTCACTTTGTGCTGGAGAATTTTCTC-AAGACAAAGAC 495
Query 512 TCTGTTACCAAACTCCTGAGTGATATGCATATCTGTGATGCAAGACCGGTGTTTGATGTG 571
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 496 TCTATTACCAAACTCCTGAGTGATATGCAGATCTGTGATGCAAGACCGGTGTTTGATGTT 555
Query 572 TATTTGCCAAACAGCCAGTTCAAGAAGTCTTCTCCTGGTGAACCGAGCTTTGTCACTTGC 631
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 556 TATTTGCCAAACAGCCACTTCAAGAAGTCTTCTCCTGGTGAACCGAGCTTTGTCGCTTGC 615
Query 632 TTCTCGGGAGACTCTCCACCAAGTAAAGAAGAAATT 667
||||||||||||||||||||||||||||||||||||
Sbjct 616 TTCTCGGGAGACTCTCCACCAAGTAAAGAAGAAATT 651
> Ahg486180 jgi|Araly1|486180|fgenesh2_kg.5__2172__AT3G57360.1
Length=785
Score = 621 bits (336), Expect = 2e-177
Identities = 573/683 (84%), Gaps = 33/683 (5%)
Strand=Plus/Plus
Query 1 GAGGAGAAAGACTGGGAAGGTTC-TCCGCTGAGTGAAAACGAAGCTGGTTTACTATGCTA 59
||||| ||||||||||||| ||| || | || || |||||||||||||| | | | |
Sbjct 4 GAGGAAAAAGACTGGGAAGTTTCTTCTTC-AAGCGATAACGAAGCTGGTTTTCCAAACGA 62
Query 60 TGATGACGAAGAATATCAATT-TGGTGGTCCAGCT-CCCAAATTACAATTCAGAGTAGGA 117
|||||||||||| | || ||| ||||||| ||| | ||||| ||||| ||||||||||||
Sbjct 63 TGATGACGAAGAGTTTC-ATTCTGGTGGTTCAG-TGCCCAAGTTACAGTTCAGAGTAGGA 120
Query 118 TCCTCCAAGGCTCGTTGGAATGCTGAATTAGGATTTAGGAATGGCCGAAGTTGAGGTCAA 177
|| |||||||||||||||| ||||| | | ||||||||||| ||||||||||| ||
Sbjct 121 TCTTCCAAGGCTCGTTGGATTGCTG----A--A-TTAGGAATGGCTGAAGTTGAGGTTAA 173
Query 178 AAGGGGTAAACTTTGGACGACAACTGGAATTATCCGTACCGGAAAAACATATTGCTTCAT 237
|||||| ||||||||||||||||||||||| || |||| ||||| ||||||||||||||
Sbjct 174 AAGGGGAAAACTTTGGACGACAACTGGAATCATTCGTAGTGGAAAGACATATTGCTTCAT 233
Query 238 AGAAGAGGCTCTGTATTTGAGTGAAATTGGAGAGTTGCAGCTCTTGGGTGATGAGGATGA 297
||||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||||
Sbjct 234 AGAAGAGGCTCTGTATTTGAGTGAAATAGGAGAGTTACAGATCTTGGGTAATGAGGATGA 293
Query 298 CGTAGTGATTTCATTGAAGGACTTGTATGGGGAAATAGCGGAGGGAAAATAT-GGCTGCT 356
| ||||||| |||||||||||||||||| | |||| || |||| |||| | || ||||
Sbjct 294 CATAGTGATCCCATTGAAGGACTTGTATGAGAAAATGGCAGAGGAAAAA-AGCGGTTGCT 352
Query 357 GTTGGGAAAACTACGAGGTTTATAGATACTTAAAGGGTCTTGGTTACATTCTAGGCAG-A 415
||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 353 GTTGGGAAAACTATGAGGTTTATAGATACTTAAAGGGTCTAGGTTACATCCTAGGCAGGA 412
Query 416 CATGGAGTTCCTTGGAC-TACAAAATATGCTGTGAAT-ACTACACCAAGTGATGAAGATG 473
||||| || ||||||| | ||| |||||| ||| || | ||||| || |||||| |
Sbjct 413 -ATGGAATTTCTTGGACGTT-AAAGGATGCTGC-AATTACGAGACCAAATGGTGAAGAAG 469
Query 474 AGTCA-CTTTGTGCTGCAGAATTT-TTCCAAGACAGAG-ACT-CTGTTACCAAACTCCTG 529
||||| ||| |||| | |||| | || |||||| || | | |||| || |||||| ||
Sbjct 470 AGTCAGCTT-GTGCAGGTGAATGTCTTG-AAGACA-AGGA-TACTGTAACTAAACTCTTG 525
Query 530 AGTGATATGCATATCTGTGATGCAAGACCGGTGTTTGATGTGTATTTGCCAAACAGCCAG 589
| |||||||| || |||||||||| | | |||||||| |||||| | |||||||||| |
Sbjct 526 GGAGATATGCAGATTTGTGATGCAAAAGCTGTGTTTGACGTGTATCTACCAAACAGCCGG 585
Query 590 TTCAAGAAGTCTTCTCCTGGTGAACCGAGCTTTGTCA-CTTGCTTCTC-GGGAGACTCTC 647
|||||||||||||||||||||||||| |||||||| | |||||||||| ||| |||||||
Sbjct 586 TTCAAGAAGTCTTCTCCTGGTGAACCAAGCTTTGT-AGCTTGCTTCTCTGGG-GACTCTC 643
Query 648 CACCAAGTAAAGAAGAAATTAAA 670
||||||| |||||||| ||||||
Sbjct 644 CACCAAGCAAAGAAGATATTAAA 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27677237742
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5