BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02380.1
Length=1315
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477472 jgi|Araly1|477472|fgenesh2_kg.3__173__AT3G02380.1 1829 0.0
Ahg488429 jgi|Araly1|488429|fgenesh2_kg.6__1563__AT5G15840.1 431 7e-120
Ahg488432 jgi|Araly1|488432|fgenesh2_kg.6__1566__AT5G15850.1 230 3e-59
> Ahg477472 jgi|Araly1|477472|fgenesh2_kg.3__173__AT3G02380.1
Length=1174
Score = 1829 bits (990), Expect = 0.0
Identities = 1074/1116 (96%), Gaps = 0/1116 (0%)
Strand=Plus/Plus
Query 70 ATGTTGAAAGAAGAGAGTAATGAGAGTGGTACTTGGGCACGAGCATGTGACACTTGTCGT 129
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 52 ATGTTGAAAGAAGAGAGTAACGAGAGTGGTTCTTGGGCACGAGCATGTGACACTTGTCGT 111
Query 130 TCAGCCGCCTGCACTGTCTACTGTGAAGCCGACTCTGCCTACTTGTGCACCACCTGTGAT 189
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 112 TCAGCCGCCTGCACTGTCTACTGTGAAGCTGACTCTGCCTACTTGTGCACCACCTGTGAT 171
Query 190 GCTCGAGTTCACGCAGCCAACCGTGTTGCTTCTCGCCATGAACGTGTTCGTGTCTGTCAG 249
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 172 GCTCGAGTTCACGCAGCCAATCGTGTTGCTTCTCGCCATGAACGTGTTCGTGTCTGTCAG 231
Query 250 TCATGTGAGTCTGCCCCAGCTGCGTTTTTGTGTAAAGCAGACGCTGCGTCTCTTTGTACA 309
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 232 TCATGTGAATCTGCCCCGGCTGCGTTTTTGTGTAAAGCAGACGCTGCGTCTCTTTGCACA 291
Query 310 GCTTGTGATGCAGAGATTCATTCCGCAAACCCACTAGCTAGACGTCATCAGCGAGTTCCG 369
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 292 GCTTGTGATGCTGAGATTCATTCCGCAAACCCACTAGCTAGACGTCATCAACGAGTTCCG 351
Query 370 ATTCTTCCATTATCTGCAAACTCTTGCAGCTCCATGGCCCCAAGTGAGACTGATGCTGAT 429
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 352 ATTCTGCCATTATCTGCAAACTCTTGCAGCTCCATGGCCCCAAGTGAGACTGATGCAGAT 411
Query 430 AACGATGAGGATGATCGAGAGGTTGCTTCGTGGTTACTCCCTAATCCAGGGAAAAACATC 489
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
Sbjct 412 AACGATGAGGATGATCGAGAGGTGGCTTCGTGGTTACTGCCTAATCCAGGGAAAAACAGC 471
Query 490 GGTAATCAGAATAATGGGTTCTTGTTTGGTGTTGAGTACCTTGATCTTGTGGATTACAGC 549
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 472 GGTAATCAGAACAATGGGTTCTTGTTTGGTGTTGAGTACCTTGATCTCGTGGATTACAGC 531
Query 550 TCCAGCATGGACAACCAATTCGAAGATAATCAGTACACTCACTACCAGAGGAGCTTTGGA 609
||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||
Sbjct 532 TCCAGCATGGACAACCAATTCGAAGATCATCAGTACAGTCACTACCAAAGGAGCTTTGGA 591
Query 610 GGAGATGGAGTTGTGCCGCTTCAAGTTGAAGAATCAACAAGTCACCTGCAACAAAGCCAA 669
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 592 GGAGATGGAGTTGTGCCACTTCAAGTTGAAGAATCAACAAGTCACCTTCAACAAAGCCAA 651
Query 670 CAAAACTTTCAGTTGGGTATCAACTATGGATTCTCCTCAGGAGCTCACTACAACAACAAC 729
|| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 652 CACAACTTTCAGTTGGGTATCAACTATGGCTTCTCCTCAGGACCTCACTACAACAACAAC 711
Query 730 TCCTTAAAGGACCTAAACCATAGCGCATCCGTTTCATCAATGGACATCAGTGTTGTGCCA 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TCCTTAAAGGACCTAAACCATAGCGCATCCGTTTCATCAATGGACATCAGTGTTGTGCCA 771
Query 790 GAGTCAACTGCAAGTGACATAACAGTCCAACACCCAAGAACTACTAAAGAGACGATAGAC 849
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 772 GAGTCAACAGCAAGTGACATAACAGTCCAACACCCAAGAACAACTAAAGAGACGACAGAC 831
Query 850 CAACTATCTGGTCCTCCTACTCAGGTGGTGCAACAGCTTACTCCAATGGAGAGGGAGGCT 909
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 832 CAACTAGCTGGTCCTCCTACTCAGGTGGTGCAGCAGCTTACTCCAATGGAGAGGGAGGCT 891
Query 910 AGGGTCCTGAGATACAGAGAGAAGAAGAAGACAAGGAAATTTGACAAGACAATAAGATAT 969
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 892 AGGGTCCTGAGATACAGAGAGAAGAAGAAGACGAGGAAATTTGACAAGACAATAAGGTAT 951
Query 970 GCTTCAAGAAAGGCATATGCAGAGATAAGACCACGGATCAAGGGCAGATTCGCAAAGAGG 1029
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 952 GCTTCAAGAAAGGCATATGCAGAGATAAGACCACGGATCAAGGGCCGATTCGCAAAGAGG 1011
Query 1030 ATAGAAACTGAAGCTGAGGCTGAAGAAATCTTCTCAACATCGCTAATGTCTGAGACTGGA 1089
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1012 ATAGAAATTGAAGCTGAGGCTGAAGAAATTTTCTCAACATCGCTAATGTCTGAGACCGGA 1071
Query 1090 TATGGAATTGTCCCTTCCTTCTAAACTCCTATGGCGAAGATAGACTAGATTGCATGCTGT 1149
||||||||||| |||||||||| ||||| | |||||||||| ||||||||||||||||||
Sbjct 1072 TATGGAATTGTTCCTTCCTTCTGAACTCGTGTGGCGAAGATGGACTAGATTGCATGCTGT 1131
Query 1150 AAATTACTTCTAGTTTGGATTTCTACAAGTTATTAC 1185
||||||||||||||||| ||||||||||||| ||||
Sbjct 1132 AAATTACTTCTAGTTTGTATTTCTACAAGTTTTTAC 1167
> Ahg488429 jgi|Araly1|488429|fgenesh2_kg.6__1563__AT5G15840.1
Length=1339
Score = 431 bits (233), Expect = 7e-120
Identities = 604/774 (78%), Gaps = 61/774 (8%)
Strand=Plus/Plus
Query 433 GATGAGGATGATCGA-GAGGTTGCTTCGTGGTTACTCCCTAATC-CAGGGAAAAACATCG 490
|||||||||| | | ||||| ||||||||| | ||||||| | ||| ||||| |||
Sbjct 491 GATGAGGATG-CCAAGGAGGTGGCTTCGTGGCTGTTCCCTAA-CTCAGACAAAAATATCA 548
Query 491 GTAATCAGAATAATGGGTTCTTGTTTGGTGTTGAGTACCTTGATCTTGTGGATTACAGCT 550
||| ||||| |||||||| |||||| ||| |||||| || || ||||||||||||| ||
Sbjct 549 ATAACCAGAACAATGGGTTATTGTTTAGTGATGAGTATCTAGACCTTGTGGATTACAACT 608
Query 551 CCAGCATGGACAACCAATT--C--G---A-A-GAT--A-ATCAG-TACACT-C-AC-TA- 593
| || |||||| || |||| | | | | || | | ||| | ||| | | ||
Sbjct 609 CAAGTATGGACTACAAATTCACAGGTCAATACCATCAACACCAGCAAAACTGCGGCGTAC 668
Query 594 C-CAGAGGAGCTTTGGAGGAGATGGAGTTGTGCCGCTTCAAGTTGAAGAATCAACAAGTC 652
| |||| ||||| || |||||||||||||| ||||||||| |||||||||||| | |
Sbjct 669 CACAGACGAGCTACGGGGGAGATGGAGTTGTTCCGCTTCAACTTGAAGAATCAAGGGGCC 728
Query 653 ACC--TGCAACA-AAGCCAACAAAACTTTCAGTTGGGTATCAACTATGGATTCTCCTCAG 709
||| ||| || || |||||| || |||||||| | |||||| ||| || ||||||||
Sbjct 729 ACCAGTGC--CATAA-CCAACAGAATTTTCAGTTCGATATCAAATAT-GA--CTCCTCAG 782
Query 710 G-AGCTCACTACAACAACAACTCCTTAAAGGACCTAAACCATAGCGCATCCGTTTCATCA 768
| || |||||||||| |||||| || ||| ||||||| || || | ||| |||
Sbjct 783 GAAG-TCACTACAACGACAACT-GTT-----CCCTTAACCATAACGTATACATTTTATCT 835
Query 769 ATGGACATC-AGTGTTGTGCCAGAGTCAACTGCAAGTGACATAACAG-TCCAACACCCAA 826
||||| | | | |||||||| |||||||| ||| |||||| ||||| | | ||||||||
Sbjct 836 ATGGA-AACTGGCGTTGTGCCGGAGTCAACAGCACGTGACAAAACAGCTTC-ACACCCAA 893
Query 827 GAACTACTAAAGAGACGATAGACCAACTATCTGGTCCTCCTACTCAGGTGGTGCAA--CA 884
|||| | ||| |||||| |||||||||| ||| ||||| | |||| || | || ||
Sbjct 894 GAACGCCGAAAAAGACGACAGACCAACTACCTGACCCTCCAATTCAGATGAT--AACCCA 951
Query 885 GCTTACTCCAATGGAGAGGGAGGCTAGGGTCCTGAGATACAGAGAGAAGAAGAAGACAAG 944
|||| ||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct 952 ACTTAGTCCAATGGACAGAGAAGCCAGGGTCCTGAGATACAGAGAGAAGAAGAAGACAAG 1011
Query 945 GAAATTTGACAAGACAATAAGATATGCTTCAAGAAAGGCATATGCAGAGATAAGACCACG 1004
||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 1012 GAAATTTGAGAAGACAATAAGGTATGCTTCAAGGAAGGCATATGCAGAGATAAGACCGCG 1071
Query 1005 GATCAAGGGCAGATTCGCAAAGAGGATAGAAA-CTGAAGCTGAGG-CTGAAGAAATCTTC 1062
| |||| ||| | ||||||||||||| ||||| | ||||| |||| | ||| || |
Sbjct 1072 GGTCAATGGCCGGTTCGCAAAGAGGAGAGAAATC-GAAGCCGAGGACC-AAGTGTTCAAC 1129
Query 1063 TCAACATCGCTAATGT-CTGAGACTGGATATGGAATTGTCCCTTCCTTCTAA-ACTCCTA 1120
||| | ||| |||| | || || |||||||| ||||| ||||| | || | |||||||
Sbjct 1130 ACAA--T-GCTGATGTAC-GACACAGGATATGGCATTGTTCCTTCATGCTGATACTCCTA 1185
Query 1121 TGGCGAAGATA--GACTAGATTGCATGCTGTAAATTACTTCT-AGTTTG-GATT 1170
|||| || ||| |||||||||||| |||||||||||||| | |||||| ||||
Sbjct 1186 TGGCAAAAATAAAGACTAGATTGCAAGCTGTAAATTACTTTTTAGTTTGAGATT 1239
> Ahg488432 jgi|Araly1|488432|fgenesh2_kg.6__1566__AT5G15850.1
Length=1592
Score = 230 bits (124), Expect = 3e-59
Identities = 290/366 (79%), Gaps = 28/366 (8%)
Strand=Plus/Plus
Query 891 TCCAATG-GAGAGGGAGGCTAGGGTCCTGAGATACAGAGAGAAGAAGAAGACAAGGAAAT 949
||||| | || || |||||||| |||||||||||||||||||||||||||| || ||||
Sbjct 1227 TCCAA-GAGACAGAGAGGCTAGAGTCCTGAGATACAGAGAGAAGAAGAAGATGAGAAAAT 1285
Query 950 TTGACAAGACAATAAGATATGCTTCAAG-AAAGGCATATGCAGAGATAAGACCACGGATC 1008
|||| ||||| ||||||||||||||||| |||| | |||||||||| |||||||||||||
Sbjct 1286 TTGAGAAGACGATAAGATATGCTTCAAGGAAAG-CGTATGCAGAGAAAAGACCACGGATC 1344
Query 1009 AAGGG-CAGATTCGCAAAGAGGATA-GAAACTGAAGCTGAGGCTGAA-GAAATCTT-CTC 1064
||||| | | || |||||||||| | ||| ||| || ||||| || ||| ||| |||
Sbjct 1345 AAGGGGCGGTTT-GCAAAGAGGA-ACGAAGTTGATGCAGAGGCA-AACGAAG-CTTTCTC 1400
Query 1065 AACA-TCGCTAATGTCTGAGACTGGATATGGAATTGTCCCTTCCTTCTAAA-CTCCTATG 1122
||| || ||| || ||| || |||||||||||||| || || |||| | || |||||
Sbjct 1401 CACAATCA-TAACGTTTGACACCGGATATGGAATTGTTCCATCATTCTGATGCTGCTATG 1459
Query 1123 GCGAAGATAGACTAGATTGCATGCT-GTAAATTACTTCTAGTTTGGATTTC-TACAAGTT 1180
|| || | | ||||| |||||||| ||||||||||||| ||||| | ||| | ||||||
Sbjct 1460 GC-AA-A-A--CTAGACTGCATGCTTGTAAATTACTTCTGGTTTGAAATTCCTGCAAGTT 1514
Query 1181 ATTACTGCA-T-ATGGGTCCTTAGTTTTGTGACTTTTGTCAAACTAGTACGAGTTTAATC 1238
|||| | | ||| | | || ||| | ||||||| |||||||||||||| |||
Sbjct 1515 GTTACCACGGTTATGCATA-T-AGGCCTGT-AGTTTTGTCTAACTAGTACGAGTT-AATT 1570
Query 1239 AGATAT 1244
||||||
Sbjct 1571 AGATAT 1576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49178562930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5