BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02410.1
Length=1340
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903036 jgi|Araly1|903036|Al_scaffold_0003_164 2050 0.0
> Ahg903036 jgi|Araly1|903036|Al_scaffold_0003_164
Length=1281
Score = 2050 bits (1110), Expect = 0.0
Identities = 1226/1281 (96%), Gaps = 12/1281 (1%)
Strand=Plus/Plus
Query 72 ATGCAGTTGTCTCCGGAACGATGCCGTCCGATGTC-TGAA-A-------ACA-G--AGAG 119
||||||||||||||||||||||||||||||||||| | || | | | | ||||
Sbjct 1 ATGCAGTTGTCTCCGGAACGATGCCGTCCGATGTCTTTAACAGCGTCGGAAATGAAAGAG 60
Query 120 GCTTGGTCAGCGAATTCCGAGGAAATGGAGCTGCTTCACGGCTCCAACAGATTATCTTCA 179
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTTGCCCAGCGAATTCCGACGAAATGGAGCTGCTTCACGGCTCCAACAGATTATCTTCA 120
Query 180 CCGGAACATGTTCGTAGAAGAGTCTCCGGGAATTCTTCTGAGGACGGTTCGCCTCGAATT 239
|||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct 121 CCGGAACATGTTCGTAGAAGAGTCTCTGGGAATTCTTCTGCGGAAGGTTCGCCTCGAATT 180
Query 240 TGCCGGCAGCAGTCGTTCGGTCGCGACATAGGCCATGCAGCTGCCGAGACGTATCTCATT 299
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 181 TGTCGGCAGCAGTCGTTCGGTCGCGACATAGGCCATGCAGCTGCCGAGACGTATTTAATT 240
Query 300 ACTCGACTTAGCTTCAACCTTCTTGGATATCTCGGGGTAGGTTACCGGTGGATCACAAGA 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACTCGGCTTAGCTTCAACCTTCTTGGATATCTCGGGGTAGGTTACCGGTGGATCACAAGA 300
Query 360 TTACTTGCTCTTGCTTGTTATGCAATGCTCCTTATGCCTGGTTTCCTTCAAGTTGCATAT 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTACTAGCTCTTGCTTGTTATGCAATGCTCCTTATGCCTGGTTTCCTTCAAGTTGCATAT 360
Query 420 CTTTATTTTTTCTCATCTCAAGTCAGGAGGAGTATAGTTTATGGAGGTCATCCAAGGAAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTTATTTTTTCTCATCTCAAGTCAGGAGGAGTATAGTTTATGGAGGTCATCCAAGGAAT 420
Query 480 AGGCTGGATTTGTACATACCGCCAACGAGTGATGGCCTGAAGCCGGTTGTAGTTTTCGTT 539
||||||||||||||| |||||||||| | ||||||||||||||||||||| ||||||||
Sbjct 421 AGGCTGGATTTGTACTTACCGCCAACTAATGATGGCCTGAAGCCGGTTGTTGTTTTCGTG 480
Query 540 ACTGGTGGAGCTTGGATTATCGGTTACAAAGCTTGGGGTTCTCTCTTGGGACTACAGCTA 599
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 481 ACTGGTGGAGCTTGGATTATCGGTTACAAAGCTTGGGGTTCTCTCTTGGGGCTGCAGCTA 540
Query 600 GCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAGAAACTTTCCTCAGGGGACAATT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 GCAGAAAGGGACATAATTGTGGCATGTCTAGATTACAGAAACTTTCCTCAGGGCACAATT 600
Query 660 AGTGATATGGTAAGTGATGCAGCTCAAGGAATCTCATTTGTCTGCAATAACATCTCTGCA 719
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 601 AGTGATATGGTAAGTGATGCCGCGCAAGGAATCTCATTTGTCTGCAATAACATCTCTGCA 660
Query 720 TTTGGAGGTGATCCTAACAGAATCTATCTGATGGGGCAATCGGCTGGTGCACATATCTCT 779
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 661 TTTGGAGGTGATCCTAACAGAATCTATTTGATGGGGCAATCAGCTGGTGCACATATCTCT 720
Query 780 TCTTGTGCTCTCTTTGAACAAGCTATTAAAGAATCAAGAGGGGAGAGCATCTCATGGAGT 839
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 721 TCTTGTGCTCTCTTTGAGCAAGCTATTAAAGAATCAAGACGGGAGAGCATCTCATGGAGT 780
Query 840 GTATCTCAGATTAAAGCTTACTTTGGTTTATCTGGAGGGTACAATCTCTTTAATCTGGTT 899
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 GTATCTCAGATAAAAGCTTACTTTGGTTTATCTGGAGGGTACAATCTCTTCAATCTGGTT 840
Query 900 GAACACTTCCACAACCGAGGCTTGTATCGTTCAATTTTCCTAAGCATAATGGAAGGAGAA 959
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAACACTTCCACAACCGGGGCTTGTATCGTTCAATTTTCCTAAGCATAATGGAAGGAGAA 900
Query 960 GAGTCCTTTAAACAATTCTCCCCTGAAGTAAGATTGAAAGACCTGAATGTAAGAAAAGCT 1019
||||||||| |||||||||| |||||||| |||||||||||||||| |||||||||||||
Sbjct 901 GAGTCCTTTGAACAATTCTCTCCTGAAGTGAGATTGAAAGACCTGAGTGTAAGAAAAGCT 960
Query 1020 GCAGCCCTCTTACCTCATATTATACTCTTTCATGGATCCGCAGATTATTCAATTCCACCT 1079
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 961 GCAGCCCTCTTACCTTATATTACACTCTTTCATGGATCCGCAGATTATTCAATTCCACCT 1020
Query 1080 GAAGCAAGCAAAACTTTTACAGATGCTCTTCAAGCTGCTGAAGTGAAAGCTGAGCTAGTT 1139
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1021 GAAGCAAGCAAAACTTTTACAGATGCTCTTCGAGCTGCTGAAGTGAAAGCTGAGCTAGTT 1080
Query 1140 ATGTACAAGGGTAAAACTCATACCGACCTATTTCTTCAGGATCCTCTGAGAGGCGGTAAA 1199
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1081 ATGTACAAGGGTAAAACTCATACCGATCTATTTCTTCAGGATCCTCTGAGAGGCGGTAAA 1140
Query 1200 GATGAGCTATTTGATCATATAGTCTCTATGATACACGCCGATGACAGTGACGCATTGAGA 1259
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1141 GATGAGCTATTTGATCATATAGTCTCTATGATACACGCCGATGACAGTTACGCATTGAGA 1200
Query 1260 AACGATGCTGTTGCGCCACCGAGGAAACGGCTTGTTCCAGAGTTCTTGCTGAAACTGGCT 1319
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1201 AATGATGCTGTTGCGCCACCGAGAAAACGGCTTGTTCCAGAGTTCTTGCTGAAACTGGCC 1260
Query 1320 GGCAGGGTCAGCCCTTTTTGA 1340
|||| ||||||||||||||||
Sbjct 1261 GGCAAGGTCAGCCCTTTTTGA 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50131635855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5