BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02420.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927721 jgi|Araly1|927721|scaffold_300178.1 1751 0.0
> Ahg927721 jgi|Araly1|927721|scaffold_300178.1
Length=1077
Score = 1751 bits (948), Expect = 0.0
Identities = 1045/1090 (96%), Gaps = 14/1090 (1%)
Strand=Plus/Plus
Query 48 TCTCTCTCCGGCGATCTCATCCATGGCGGAAGGCGGCGAAGATTCCCAGCGGTTGAAGAA 107
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TCTCTCTCCGGCGATCTCATCCATGGCGGAAGGCGGCGAAGATCCCCAGCGGTTGAAGAA 60
Query 108 AATTGCGGCGGCTGCCTTCGACTACGAAAACGACGCTCGATGGGCCGATTACTGGTCCAA 167
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 AATTGCGGCGGCTGCCTTCGACTACGAAAACGACGCTCGATGGGCTGATTACTGGTCCAA 120
Query 168 TATCCTCATCCCTCCTCACATGGCTTCTCGTCCCGAGGTCGTCGACCATTTCAAGCGCAA 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATCCTCATCCCTCCTCACATGGCTTCTCGTCCCGAGGTCGTCGACCATTTCAAGCGCAA 180
Query 228 ATTCTACCAACGCTACATCGATCCTGATCTTGTTGTGGAGCCTATGTCGACTTCATCTTC 287
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 ATTCTACCAACGCTACATCGATCCTGATCTTCTTGTGGAGCCTATGTCGACTTCATCTTC 240
Query 288 GTCTTCACAATCTGCCAGGCCAACTGCTACATCTGCATCTTCAACTGCATCTTCTAATGC 347
|||||| ||||| |||| | | | |||||| || || ||||||||||||||||
Sbjct 241 GTCTTCGCAATCCGCCA-G---A---C--CATCTG---CTACATCTGCATCTTCTAATGC 288
Query 348 AAATGAACAAGTTCGTTCACGGAACTCAGGATCGGTTCCTCGAACCTCTGGGCCATCTGC 407
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 289 AAATGAACAAGTTCGTTCACGGAACTCAGGATCGGTTCCTCGAACATCTGGGCCATCTGC 348
Query 408 TACGACTGGTGCAACCCCAAGTTCAATGCGCTGGGATGAGCAGACGATTCAGTTTTCAGT 467
|||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 349 TACGGCAGGTGCAAACCCAAGTTCAATGCGCTGGGATCAGCAGACGATTCAGTTTTCAGT 408
Query 468 CAATGCTTGGGTTTTTGTTATAGCTGTGCTGGCAGTGCTACCTCTAATACCAAAGAACCT 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 CAATGCTTGGGTTTTTGTTATAGCTGTGCTGGCAGTGCTACCTCTAATACCAAAGAACCT 468
Query 528 CTCAAATAGGGCTTATCGTCTATCTTTCATGGGAACTGCATGCTCATCTCTATATTCCTT 587
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 469 CTCAAATAGGGCTTATCGTCTATCTTTCATGGGAACTGCGTGCTCATCTCTATATTCCTT 528
Query 588 ATACTCCTTATACGGGAGGCCAAGGGCATGGAATATGCAAGGGCTGCAAGTTTATTTTCA 647
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 529 ATACTCCTTATACGGGAGGCCAAGAGCATGGAATATGCAAGGGCTACAAGTTTATTTTCA 588
Query 648 ATCAATTGTGGCAGCAAAGGATTTCATCTACTTCATCTACTGCCTTACATTCGTCACTTC 707
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 589 ATCAATTGTGGCAGCAAAGGATTTCATCTATTTCATCTACTGCCTTACATTCGTCACTTC 648
Query 708 ACATCTCTGTCTCAAGTTTGCTTTGATTCCCATCTTGTGCCGGGCACTTGAACAAGTAGC 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 ACATCTCTGTCTCAAGTTTGCTTTGATTCCCATCTTGTGCCGGGCACTTGAACAAGTAGC 708
Query 768 CAAGTTCTTGAGGCGTAACTTTGGTCGGTCCACTATATACAGAAAGTACTTGGAAGACCC 827
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 709 CAAGTTCTTGAGGCGTAACTTTGGTCGTTCCACTATATACAGAAAGTACTTGGAAGACCC 768
Query 828 TTGTGTGTGGGTGGAGTCAAACACTACTACCCTCAACAT-CTTGTCATCGCAGGCTGAGA 886
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 769 TTGTGTGTGGGTGGAGTCAAACACTACTACCCTTAACATTCT-GTCATCGCAGGCTGAGA 827
Query 887 TAGCCATTGGCTTCCTTCTGATTATCTCTCTGCTCTCATGGCAACGTAACATTATACAGA 946
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 828 TAGCCATTGGCTTCCTTCTGATCATCTCTCTACTCTCATGGCAACGCAACATTATACAGA 887
Query 947 CGTTCATGTACTGGCAGCTATTGAAGCTGATGTATCAAGCACCGGTAACAGCTGGTTACC 1006
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 888 CGTTCATGTACTGGCAGCTATTGAAGCTGATGTATCAAGCACCGGTAACAGCGGGTTACC 947
Query 1007 ACCAGAGCACGTGGAGCAGAATAGGGAGGACGGTGACTCCGATTATCCAACGTTACGCTC 1066
|||||||||| ||||||| ||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 948 ACCAGAGCACATGGAGCAAAATCGGGAGGACAGTGACTCCGATTATCCAGCGTTACGCTC 1007
Query 1067 CTTTCTTGAATACTCCGGTCAGTGCCGTTCAGAGATGGTGGTTCAGGTGATAAAAAGAAA 1126
| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||
Sbjct 1008 CCTTCTTGAATACTCCGGTGAGTGCCGTTCAGAGATGGTGGTTCAGGTGATCAAAACAAA 1067
Query 1127 CAAAATGCAG 1136
||||||||||
Sbjct 1068 CAAAATGCAG 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5