BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02430.1
Length=830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927724 jgi|Araly1|927724|scaffold_300181.1 1116 0.0
Ahg484296 jgi|Araly1|484296|fgenesh2_kg.5__288__AT3G02430.1 575 2e-163
> Ahg927724 jgi|Araly1|927724|scaffold_300181.1
Length=703
Score = 1116 bits (604), Expect = 0.0
Identities = 663/692 (96%), Gaps = 1/692 (0%)
Strand=Plus/Plus
Query 1 ATCAAAACTAAAAAGATGTCTGCCCTTCGGCTAAGAAACGCAAACACTCCGGCTCCGGAG 60
||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 9 ATCAAAATTAAAAAGATGTCTGCCCTACGGCTAAGAAACGCAAACACTCCTGCTCCGGAG 68
Query 61 CTCGACGAGTTATCCGATCAGACACCGTCAGAATCCCGGGTGCTCAAGAGACAGATGTCA 120
||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 69 CTCGACGAGTTTTCCGATCAGACACCGTCAGATTCACGGGTGCTCAAGAGACAGATGTCG 128
Query 121 ATGTCTCAGCGAGCCATGTCAAACACCCTGACGTCAGCAGCCAATCTCTCAAACCTACTC 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 129 ATATCTCAGCGAGCCATGTCAAACACCCTGACGTCAGCAGCCAATCTCTCAAACCTCCTA 188
Query 181 CCAACGGGAACACTCCTCGCGTTTCAACTCCTAACGCCGGTTTTCACTTCAAACGGCGTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 CCAACGGGAACACTCCTCGCGTTTCAACTCCTAACGCCGGTTTTCACTTCAAACGGCGTT 248
Query 241 TGCGACCACGCAACGCGTTTCCTAACCGCCGTTCTCCTTTTCCTCTTAGCCGCGTCTTGC 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 249 TGCGACCACGCAACGCGTTTCCTAACCGCCGTTCTCCTCTTCCTCTTAGCCGCGTCTTGC 308
Query 301 TTCGTCAGCTCCTTTACCGATAGCGTTAAAGCCGACGATGGAACTATCTACTTCGGTTTC 360
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 309 TTCGTCAGCTCCTTCACCGATAGCGTTAAAGCCGAGGATGGAACAATCTACTTCGGTTTC 368
Query 361 GTAACGTTCAAAGGCATGTGGGTCGTTGACTATCCTGACCCGTCCGGGTTAGGTTTACCC 420
|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 369 GTCACGTTCAAAGGCATGTGGGTCGTTGACTATCCTGACCCGTCCGGATTGGGTTTACCC 428
Query 421 GATTTAGCCAAATATCGGATGCGGTTCGTTGATTGGATCCACGCTACGTTGTCGGTTTTA 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 429 GATTTAGCCAAATATCGGATGCGGGTCGTTGATTGGATCCACGCTACGTTGTCGGTTTTA 488
Query 481 GTGTTTGGAGCGGTTGCGTTGAGAGACAAGTATATAACTGATTGCTTTTATCCGTCGCCG 540
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 489 GTGTTTGGAGCGGTTGCGTTGAGAGATAAGTATATAACTGATTGCTTTTGTCCGTCGCCG 548
Query 541 GAGGCAGAGACGAAACATGTCTTGGACATTGTTCCGGTGGGTGTTGGGGTTATGTGTAGC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 GAGGCAGAGACGAAACATGTCTTGGACATTGTTCCGGTGGGTGTTGGGGTTATGTGTAGT 608
Query 601 CTTTTGTTTATGGTTTTTCCGGCGAGACGCCACGGAATTGGATATCTTGTTACCGGTAGC 660
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 609 CTTTTGTTTATGGTTTTTCCGGCGAGGCGTCACGGGATTGGATATCTTGTTACCGGTAGC 668
Query 661 GTAGATCGCCGATGATTTATAATTAAAACCAA 692
|| |||||||| ||||||| | ||||| ||||
Sbjct 669 GTTGATCGCCGGTGATTTACATTTAAA-CCAA 699
> Ahg484296 jgi|Araly1|484296|fgenesh2_kg.5__288__AT3G02430.1
Length=777
Score = 575 bits (311), Expect = 2e-163
Identities = 364/389 (94%), Gaps = 6/389 (2%)
Strand=Plus/Plus
Query 417 ACCCGATTTAGCCAAATATCGGATGCGGTTCGTTGATTGGATCCACGCTACGTTGTCGGT 476
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 378 ACCCGATTTAGCCAAATATCGGATGTGGGTCGTTGATTGGATCCACGCTACGTTGTCGGT 437
Query 477 TTTAGTGTTTGGAGCGGTTGCGTTGAGAGACAAGTATATAACTGATTGCTTTTATCCGTC 536
|||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct 438 TTTAGTGTTTGGAGCGGTTGCGTTGAGAGATAAATATATAACTGATTGCTTTTGTCCGTC 497
Query 537 GCCGGAGGCAGAGACGAAACATGTCTTGGACATTGTTCCGGTGGGTGTTGGGGTTATGTG 596
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 498 GCCGGAGGCAGAGACGAAACATGTCTTGGATATTGTTCCGGTGGGTGTTGGGGTTATGTG 557
Query 597 TAGCCTTTTGTTTATGGTTTTTCCGGCGAGACGCCACGGAATTGGATATCTTGTTACCGG 656
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 558 TAGCCTTTTGTTTATGGTTTTTCCGGCGAGGCGTCACGGGATTGGATATCTTGTTACCGG 617
Query 657 TAGCGTAGATCGCCGATGATTTATAATTAAAACCAATTTAGAAACGGTAGCGTTTGCATG 716
|||||| |||||||| ||||||| | ||||| |||||| |||||||||||||||| ||||
Sbjct 618 TAGCGTTGATCGCCGGTGATTTACATTTAAA-CCAATT-AGAAACGGTAGCGTTTTCATG 675
Query 717 GTGGGTTGACTATTTTCGTTTGTTTTCTTGTTTGTAAAGTTGTATAATTTGTATAT-ATA 775
||||||||||||||| ||||||||| |||||||||||||||||||||||||||| | |||
Sbjct 676 GTGGGTTGACTATTTACGTTTGTTTCCTTGTTTGTAAAGTTGTATAATTTGTAT-TCATA 734
Query 776 CGTTATGACC-ATTATTCTTTTTATTAAA 803
|| ||||| | ||||||||||| || |||
Sbjct 735 CGCTATGAACTATTATTCTTTTAAT-AAA 762
Score = 215 bits (116), Expect = 5e-55
Identities = 124/128 (97%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 129 GCGAGCCATGTCAAACACCCTGACGTCAGCAGCCAATCTCTCAAACCTACTCCCAACGGG 188
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 84 GCGAGCCATGTCAAACACCCTGACGTCAGCAGCCAATCTCTCAAACCTCCTCCCGACGGG 143
Query 189 AACACTCCTCGCGTTTCAACTCCTAACGCCGGTTTTCACTTCAAACGGCGTTTGCGACCA 248
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 144 AACACTCCTCGCGTTTCAACTCCTAACGCTGGTTTTCACTTCAAACGGCGTTTGCGACCT 203
Query 249 CGCAACGC 256
||||||||
Sbjct 204 CGCAACGC 211
Score = 174 bits (94), Expect = 8e-43
Identities = 108/115 (94%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 309 CTCCTTTACCGATAGCGTTAAAGCCGACGATGGAACTATCTACTTCGGTTTCGTAACGTT 368
|||||| |||||||||||||||||||| |||| |||||||||||||| |||||| |||||
Sbjct 213 CTCCTTCACCGATAGCGTTAAAGCCGAGGATGTAACTATCTACTTCGATTTCGTCACGTT 272
Query 369 CAAAGGCATGTGGGTCGTTGACTATCCTGACCCGTCCGGGTTAGGTTTACCCGAT 423
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 273 CAAAGGCATGTGGGTCGTTGACTATCCTGACCTGTCCGGGTTGGGTTTACCCGAT 327
Score = 126 bits (68), Expect = 2e-28
Identities = 78/83 (94%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 17 TGTCTGCCCTTCGGCTAAGAAACGCAAACACTCCGGCTCCGGAGCTCGACGAGTTATCCG 76
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 2 TGTCTGCCCTTCGGCTAAGAAACGCAAACACTCCAGCTCCGGAGCTTGACGAGTTTTCCG 61
Query 77 ATCAGACACCGTCAGAATCCCGG 99
|||||| |||||||||||| |||
Sbjct 62 ATCAGATACCGTCAGAATCACGG 84
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30688948185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5