BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02440.1
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477478 jgi|Araly1|477478|fgenesh2_kg.3__179__AT3G02440.1 1659 0.0
Ahg488438 jgi|Araly1|488438|fgenesh2_kg.6__1572__AT5G15900.1 239 4e-62
> Ahg477478 jgi|Araly1|477478|fgenesh2_kg.3__179__AT3G02440.1
Length=1137
Score = 1659 bits (898), Expect = 0.0
Identities = 1064/1141 (93%), Gaps = 23/1141 (2%)
Strand=Plus/Plus
Query 1 ATGGAACTTCCTGCGACAAAGTTACGAATAGGACTAGTGATATTTCCTCTTATTCTACTT 60
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGAACTTCCCGCGACAAAGTTACGAATAGGATTAGTGATATTTCCTCTTATTCTACTT 60
Query 61 ACGATAGCTCCAATCCTTTATCTCTTTTTTGGTTATCCTCTCTATTATTC-A-A-CATCA 117
|| |||||||||||||||||||||||||||||||||||| |||||||||| | | |||||
Sbjct 61 ACAATAGCTCCAATCCTTTATCTCTTTTTTGGTTATCCTATCTATTATTCAACATCATCA 120
Query 118 ACATACAAACATTTATCGAATTCATCATCGTCGTCGGCAATATCTTCTCCATCTAGGTAT 177
| ||||||||||||||||||||||||| || ||||||||||||| |||||||||||||
Sbjct 121 ATATACAAACATTTATCGAATTCATCA---TCATCGGCAATATCTTATCCATCTAGGTAT 177
Query 178 AACCA-T--TC-A--TCATCATCATCAGA-TAGTTATAAG--------A-CAGAAGATTC 221
|| || | || | |||||||||||||| || ||||||| | ||||||||||
Sbjct 178 AATCATTCATCTAGTTCATCATCATCAGATTA-TTATAAGACATCATCATCAGAAGATTC 236
Query 222 AGAACCATCGTCGTATGATAATGATTACGACGACACATATCATGATCCCAAGTCATCATC 281
||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 237 AGAACCATCGTTGTATGATAATGGTTATGACGACACATATCATGATCCCAAGTCATCATC 296
Query 282 TTTGCATAACAATGATCGTCTATCCATCTCATCATCGAATGGTCATCATCAAGTAACTCC 341
||||||||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||
Sbjct 297 TTTGCATAACAATGATCGTCTATCCATCTCATCATTGAATGTTGATCATCAAGAAACTCC 356
Query 342 TAAGAAAGAGCACCGCCGGAAAAAGAGAAAACGTAAATGCGATATATTCTCCGGCGAGTG 401
||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 357 TAAGAAAGAGCGTCGCCGGAAAAAGAGAAAACGGAACTGCGATATATTCTCCGGCGAGTG 416
Query 402 GATCCCAAACCCTAAAGCCCCGTACTACACAAACACGACATGCAGGGCGATACACGAACA 461
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GATCCCAAACCCTGAAGCCCCGTACTACACAAACACGACATGCAGGGCGATACACGAACA 476
Query 462 CCAAAACTGCATCAAGTATGGAAGACCTGATTTAGGTTTCATGAAATGGAGATGGAAACC 521
|||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 477 CCAAAACTGCATGAAGTTTGGGAGACCTGATTTAGGTTTCATGAAATGGAGATGGAAACC 536
Query 522 TAAAGAATGTGATCTCCCTCTGTTTGATCCTTACGAGTTTCTGGAAATAGTTAGAGGAAC 581
||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 537 AAAAGAATGTGAGCTTCCTCTGTTTGATCCTTACGAGTTTCTGGAGATAGTTAGAGGAAA 596
Query 582 AAGAATGGCGTTCGTTGGTGACTCCGTTAGCAGAAACCACGTTCAGTCTTTGATCTGCCT 641
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AAGAATGGCGTTTGTTGGTGACTCCGTTAGCAGAAACCACGTTCAGTCTTTGATCTGCCT 656
Query 642 ACTCTCTCGGGTGGAACATCCTGAGGGTGACTCACAACAGGAGTTTAATTTCCAACGATG 701
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||
Sbjct 657 ACTCTCTCGGGTGGAACATCCTGAGGATGACTCACAACAGGACTTTAATTTCCAAAGATG 716
Query 702 GAAATACAAAACGTACAACTTCACGATCGCCACATTTTGGACAACACATTTGGTTCGCGC 761
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 717 GAAATACAAAACGTACAACTTCACGATTGCCACATTTTGGACAACCCATTTGGTTCGTGC 776
Query 762 TGAAGAAACGGAAACCGGTCCGACAGGTCCTAATTCATTCTACAATCTCTACCTCGACGA 821
||||||||| || || |||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 777 TGAAGAAACCGAGACTGGTCCGGCAGGTCCTAATTCATTTTACAATCTCTACCTCGACGA 836
Query 822 ACCTGACCCTACTTGGGCTTCCCAAATCGGTGAGTTCGATTACATAATCATCTCATCTGG 881
||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| |||||
Sbjct 837 ACCTGACCCAACTTGGGCTTCCCAAATCGTTGAGTTCGATTACATCATCATCTCCTCTGG 896
Query 882 ACAATGGTTTTTCCGACCACTCTTCCTTTTCGACAAACAAAAAAGGATAGGATGTTTGTA 941
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 897 ACAATGGTTTTTCCGACCACTCTTCCTTTTCGACAAACAAAAAAGGATAGGATGCTTGTA 956
Query 942 TTGCTACATTCCCGGAGTCAGAAATGTCGGGGCACATTTCGCGTATAGAAGAGCATTGAG 1001
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TTGTTACATTCCCGGAGTCAGAAATGTCGGGGCACATTTCGCGTATAGAAGAGCATTGAG 1016
Query 1002 AACAACATTCAAGACAATTCTTGGATTAGAGAATTTTAAAGGAGAAGTGTTTCTGAGGAC 1061
|||||| || ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1017 AACAACGTTTAAGACCATTCTTGGATTAGAGAATTTTAAAGGAGAAGTGTTTCTAAGGAC 1076
Query 1062 ATTTGCTCCTTCACATTTCGAAGGTGGAGAATGGGACAAAGGAGCAATGAGACAGAGTTA 1121
|||||| ||||||||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct 1077 ATTTGCACCTTCACATTTTGAAGATGGAGAATGGGATAAAGGAGCAATGAGACAGAGTTA 1136
Query 1122 G 1122
|
Sbjct 1137 G 1137
> Ahg488438 jgi|Araly1|488438|fgenesh2_kg.6__1572__AT5G15900.1
Length=1302
Score = 239 bits (129), Expect = 4e-62
Identities = 310/394 (79%), Gaps = 25/394 (6%)
Strand=Plus/Plus
Query 379 TGCGATATATTCTCCGGCGAGTGGATCCCAAACCCTAAAGCCCCGTACTACACAAACACG 438
||||| |||||||| || || ||| | || |||||| | || || |||||||| ||||||
Sbjct 199 TGCGACATATTCTCGGGAGAATGGGTTCCTAACCCTGAGGCACCTTACTACACCAACACG 258
Query 439 ACATGCAGGGCGATACACGAACACCAAAACTGCATCAAGTATGGAAGACCTGATTTAGG- 497
|| ||| |||||||||||||||||||||||||||| |||| ||||||||| || ||
Sbjct 259 ACGTGCTGGGCGATACACGAACACCAAAACTGCATGAAGTTTGGAAGACCCGACAC-GGA 317
Query 498 TTTCATGAAATGGAGATGGAAACCTAAAGAATGTGA---T--CTC-CCTCTGTTTGATCC 551
|||||| || |||| |||||||||| | | || || | || || | ||||| ||
Sbjct 318 TTTCATCAAGTGGAAATGGAAACCTTATGGGTGCGAAGATGGCTTGCCAGTTTTTGACCC 377
Query 552 -TT-ACGAGTTTCTGGAAATAGTTAGAGG-AACAAGAATGGCGTTCGTTGGTGACTCCGT 608
|| | | |||||| || || || ||||| || || |||||||| ||||||||||| ||
Sbjct 378 GTTTA-G-GTTTCTTGAGATCGTGAGAGGTAA-AACCATGGCGTTTGTTGGTGACTCAGT 434
Query 609 TAGCAGAAACCACGTTCAGTCTTTGATCTGCCTACTCTCTCGGGTGGAACATCCTGAGGG 668
||||||||||||| | ||||||||||||||||| ||||||| ||| || |||| || ||
Sbjct 435 TAGCAGAAACCACATGCAGTCTTTGATCTGCCTTCTCTCTCAGGTTGAGTATCC-GATGG 493
Query 669 -TGACT-CAC---AAC-AGGA-GTTTAATTTCCAACGATGGAAATACAAAACGTACAACT 721
|| || | | || | || | ||| |||| ||||||||| |||| |||| |||||||
Sbjct 494 ATG-CTTC-CGTTAAGGATGACGATTA-TTTCAAACGATGGACATACGAAACATACAACT 550
Query 722 TCACGATCGCCACATTTTGGACAACACATTTGGT 755
||||||||||| ||||||||||| |||| |||||
Sbjct 551 TCACGATCGCCGCATTTTGGACACCACACTTGGT 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5