BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02450.1
Length=2238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927726 jgi|Araly1|927726|scaffold_300183.1 2979 0.0
> Ahg927726 jgi|Araly1|927726|scaffold_300183.1
Length=1892
Score = 2979 bits (1613), Expect = 0.0
Identities = 1819/1915 (95%), Gaps = 28/1915 (1%)
Strand=Plus/Plus
Query 180 GGATTCCAGGATAGAGAATCCATGGCTACTTTCAATGTTCTTTGTAGCAATCGATTTAGA 239
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1 GGATTCCAGGAAAGAGAATCCATGGCTACTTTCAATGTTCTTTGTAGCAATCGGTTTCTA 60
Query 240 TTCAATGGAGGTTATTCTCCGGAGAAATTTAATAGAAAGGTGTCTTCGAGGAGTAGTGAG 299
||||| |||||||||||||||||||||| || ||||||| |||||||||||||| |||||
Sbjct 61 TTCAAAGGAGGTTATTCTCCGGAGAAATCTATTAGAAAGTTGTCTTCGAGGAGTTGTGAG 120
Query 300 CTTAATGTTTGTGTCTCTAGAATC---AGGACTCAATCGTTTAGTTGCAGGAGACTTGGT 356
|||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||
Sbjct 121 CTTAATGTTTGTGTAGCTAGAACCAGGAGGAATCAATCGTTTAGTTGCAGGAGACTTGGT 180
Query 357 GGGTTTATGGAAATTGGTGAAACCAGATTAGGGGTTATTAGAGTTCATGGCGATTCTCGT 416
|||||| ||||||||||||| ||||||||||||| ||||| |||| | | |
Sbjct 181 GGGTTTCTGGAAATTGGTGATACCAGATTAGGGG---TTAGA---AATGG-G----T--T 227
Query 417 AATAGATTTTCTTGTAATAGCGAGATTAAGCGACTTGTGA-CTGGTGATTACGGAGATAA 475
| | | ||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 228 --T-G----T-TTGTAATAGCGAGATTAAGCGACTTGTGAGC-GGTGATTACGGAGATAA 278
Query 476 GGAGACTCGTATTGGTGAAAATGGTAGAAACAAAGGGAAGAGAAGAAGGTTTTCTCTTAG 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 AGAGACTCGTATTGGTGAAAATGGTAGAAACAAAGGGAAGAGAAGAAGGTTTTCTCTTAG 338
Query 536 GCTTCGACCTAGATTACGATTAGTGAGAATGAGACTTGGCAGATTTGATTTCAGAGCATC 595
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 339 GCTTCGACCTAGATTACGATTAGTGAGAATGAGACTTGGGAGATTTGATTTCAGAGCATC 398
Query 596 AATGGAAGATTTTCGATATTTTTTGAAAAAGAATCTCAAAAGAGTGATCTTGTCCACCGG 655
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 399 AATGGAAGATTTTCGATATTTTTTGAAAAAGAATATCAAAAGAGTGATCTTGTCCACCGG 458
Query 656 TGTGGCTTTAATCTTTGGACTGTGTTATTTGTTCTTGAGGTTAACTGCTGTTCCGTCCCC 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 TGTGGCTTTAATCTTTGGACTGTGTTATTTGTTCTTGAGGTTAACTGCTGTTCCGTCCCC 518
Query 716 ATCCATTGTTCCTTACTCAGATTTCGTTACGAATCTTCGAGGTGGTTCTGTTTCAAAGGT 775
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 519 ATCCATTGTTCCTTATTCAGATTTCGTAACGAATCTTCGAGGTGGTTCTGTTTCAAAGGT 578
Query 776 TTTGCTCGAAGAAGGCTCACGTCGAATCTATTACAACACTGATGAGAATGTTGAGGTTGT 835
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 579 TTTGCTCGAAGAAGGCTCTCGTCGAATCTATTACAACACTGATGAGAATGTTGAGGTTGT 638
Query 836 TGATGATGTTCACAAGTCTGAAACTTTAGAAGATCCGGCAATCCAAATTGATGGCGGCAC 895
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 TGATGATCTTCACAAGTCTGAAACTTTAGAAGATCCGGCAATCCAAATTGATGGCGGCAC 698
Query 896 AGTGACAGAAGCTGTTACGAAAGACGATACTCCGCGAAAGGTTCGAGCTTTGCCTCCTGT 955
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 699 AGTGACGGAAGCTGTTACGAAAGACGATACTCCGCGAAAGGTTCGAGCTTTGACTCCTGT 758
Query 956 GTGGAAGTATGTGACAAGAAAAGTCGATCATGATGAGAAGTTTCTTCTTAGTTTAATGAG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 759 GTGGAAGTATGTGACAAGAAAAGTCGATCATGATGAGAAGTTTCTTCTTAGCTTAATGAG 818
Query 1016 AGAGAAAGGCATTACTTATAGTTCAGCTCCTCAATCCGCATTGATGTCAATGAGAACTAC 1075
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 819 AGAGAAAGGCATTACTTATAGTTCAGCTCCTCAATCTGCATTGATGTCAATGAGAACTAC 878
Query 1076 TTTGATAACAATCATCTCTCTGTGGATTCCTTTGACACCTCTTATGTGGCTTCTTTATCG 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 TTTGATAACAATCATCTCTCTGTGGATTCCTTTGACACCTCTTATGTGGCTTCTTTATCG 938
Query 1136 GCAACTCTCAGCATCTAACAGCCCTGCGAAGAAACGACGGTCTAAAAATCCCACTGTTGG 1195
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 939 GCAACTCTCGGCATCTAACAGCCCTGCGAAGAAACGACGGTCTAAAAATCCCACGGTTGG 998
Query 1196 CTTCGATGATGTTGAGGGTGTTGATTCTGCTAAAGACGAGCTCGTGGAGATAGTCTCATG 1255
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 999 ATTCGATGATGTTGAGGGTGTTGATTCTGCCAAAGATGAGCTCGTGGAGATAGTGTCATG 1058
Query 1256 TCTTCAAGGAAGTATAAACTACAAAAAACTAGGAGCAAGATTACCGAGAGGTGTGCTTTT 1315
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1059 TCTTCAAGGAAGTATAAACTACAAAAAATTAGGAGCAAGATTACCGAGAGGTGTGCTTTT 1118
Query 1316 GGTCGGTCCACCAGGGACCGGTAAAACCTTGTTGGCTCGGGCTGTAGCTGGAGAAGCGGG 1375
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 GGTCGGTCCACCAGGGACTGGTAAAACCTTGTTGGCTCGGGCTGTAGCTGGAGAAGCGGG 1178
Query 1376 AGTTCCATTTTTCTCTGTCTCCGCTAGTGAGTTTGTTGAATTGTTTGTTGGAAGAGGCGC 1435
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 AGTTCCGTTTTTCTCTGTTTCCGCTAGTGAGTTTGTTGAATTGTTTGTTGGAAGAGGCGC 1238
Query 1436 AGCGCGAATCAGAGATCTTTTCAATGCAGCAAGGAAAAACTCACCTTCCATTATATTCAT 1495
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1239 AGCGCGAATCAGAGATCTTTTCAATGCAGCCAGGAAAAACTCACCTTCCATTATATTCAT 1298
Query 1496 TGATGAGCTTGATGCGGTTGGAGGAAAACGCGGTAGGAGTTTCAACGATGAACGTGACCA 1555
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1299 TGATGAGCTTGATGCGGTTGGAGGAAAACGTGGTAGGAGTTTCAATGATGAACGTGACCA 1358
Query 1556 GACGTTAAACCAGTTGCTTACTGAGATGGATGGATTCGAGTCAGACACGAAAGTCATTGT 1615
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1359 GACGCTAAACCAGTTGCTTACTGAGATGGATGGATTCGAGTCAGACACAAAAGTTATTGT 1418
Query 1616 AATTGCAGCAACTAACCGACCAGAAGCGTTAGACTCGGCTCTTTGTCGGCCTGGAAGGTT 1675
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1419 AATTGCAGCAACTAACCGACCAGAAGCGTTAGACTCAGCTCTTTGTCGACCTGGAAGGTT 1478
Query 1676 CTCTAGAAAAGTTTTGGTTGCAGAACCAGACCAAGAAGGCCGTCGGAAAATCTTGGCCAT 1735
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1479 CTCTAGAAAAGTTGTGGTTGCAGAACCAGACCAAGAAGGCCGTCGGAAAATCTTGGCCGT 1538
Query 1736 ACATCTGAGAGACGTTCCTTTAGAAGAAGATGCATTTCTCATATGTGATCTGGTTGCTTC 1795
|||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 ACATTTGAGAGACGTCCCTCTAGAAGAAGATGCATTTCTCATATGTGATCTGGTTGCTTC 1598
Query 1796 TTTAACTCCCGGATTTGTAGGTGCTGATCTCGCCAATATTGTCAATGAAGCTGCATTGCT 1855
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1599 TTTAACTCCCGGATTCGTAGGTGCTGATCTCGCCAACATTGTCAATGAAGCTGCATTGCT 1658
Query 1856 TGCTGCTCGTAGAGGCGGAGAAGCGGTGGCACGGGAAGATATAATGGAAGCTATAGAGAG 1915
|||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1659 AGCTGCTCGAAGAGGAGGAGAAGCGGTGGCACGGGAAGATATAATGGAAGCGATAGAGAG 1718
Query 1916 AGCGAAGTTCGGGATCAATGATAAGGAAGCGAGGCCAAGGACGTTAGGAAATGAACTCAG 1975
|| || |||||||||||||||||||||| |||||||||||| ||||||||||| || ||
Sbjct 1719 GGCAAAATTCGGGATCAATGATAAGGAAGTGAGGCCAAGGACATTAGGAAATGAGCTAAG 1778
Query 1976 CAAGATGTTCCCATGGATGCCATCTTT-GGCTAGAAGAAACGGACCAGATCAAGACGGTT 2034
|||| |||||||||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 1779 CAAGCTGTTCCCATGGATGCCATCTTTAGG-TAGAAGGAACGGACCAGATCAAGACGGTT 1837
Query 2035 TACAAGGACCGTTAGGTTATCAAACTCTCAGCTAAACCAAACCAAGACAGACCGG 2089
|||||||||||||||| |||||||||||||||||||||||| ||||||| |||||
Sbjct 1838 TACAAGGACCGTTAGGCTATCAAACTCTCAGCTAAACCAAAACAAGACAAACCGG 1892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84255621940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5