BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02460.1
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477479 jgi|Araly1|477479|fgenesh2_kg.3__180__AT3G02460.1 2604 0.0
Ahg488442 jgi|Araly1|488442|fgenesh2_kg.6__1576__AT5G15930.1 1027 0.0
> Ahg477479 jgi|Araly1|477479|fgenesh2_kg.3__180__AT3G02460.1
Length=1724
Score = 2604 bits (1410), Expect = 0.0
Identities = 1639/1743 (94%), Gaps = 41/1743 (2%)
Strand=Plus/Plus
Query 5 CTAAAACTTTATGAATCATAAATTCATAATCGTCGTGATAAAGCCTCTAATTACCCAAAA 64
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 CTAAAACTTTATGAATCATAAATTCATAATCGTCGTGATAAAGCCTCTTATTACCCAAAA 60
Query 65 TCGTGCTCAA------TTTAGAAAATAGAATCTTTTAGTTGTCACCAAACTTAGCAAGTT 118
|||| ||||| |||| |||||| |||||||||||| |||||||||||||||||||
Sbjct 61 TCGTACTCAATTTTTTTTTAAAAAATAAAATCTTTTAGTTCTCACCAAACTTAGCAAGTT 120
Query 119 GGCATAACCACCA-TTTAATCATAATAATACTCTCTCGACGGCGTCGTTTCGTGCTGGCT 177
|||||||||| | |||||||| ||||||| | |||||||| ||||||||||||||||||
Sbjct 121 GGCATAACCA-TATTTTAATCA-AATAATA-T-TCTCGACGTCGTCGTTTCGTGCTGGCT 176
Query 178 TCACTTG-A--ATTATTATTTTTCTGGCTGGACTCATATTTTCTCCGGCAAGGaaaaaag 234
||||||| | ||||||||||||||||||||||||||| | | ||||||
Sbjct 177 TCACTTGAATTATTATTATTTTTCTGGCTGGACTCATA---T-T---------AAAAAA- 222
Query 235 aaaaaCATCACTTTCTTCAAGCGGATGAAAAATTCAAAGATTGAGTCACCACCACCATAG 294
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AAAAACATCACTTTCTTCAAGCGGATGAAAAATTCAAAGATTGAGTCACCACCACCATAA 282
Query 295 TAATATACGCGTATGAGTTCCCAGATGTGATCTCCATCCAACGTTGTATTTCTTTCGTTT 354
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 283 TAACATACGCGTTTGAGTTCCCAGATGTGATCTCCATCCAACGTTGTATTTCTTTCGCTT 342
Query 355 TGGTTATCTTCTTCGGTTCCATCGAATTCCAACAATTCCCATCGAGGAATTTGGTTACGA 414
|||||||||||||| |||||||||||||||||||||| ||||||||||||| ||| |||
Sbjct 343 TGGTTATCTTCTTCAATTCCATCGAATTCCAACAATTCTCATCGAGGAATTTTGTTTCGA 402
Query 415 ATCTTTTGATCTGACTAAACCTAGGGAGCTTGATCACAAGGAGACTGAAACCAATGCTAG 474
|||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||
Sbjct 403 ATCTTTTGATCTGACTAAACGTAGGCAGCTTGATCAAAAGGAGACTGAAACCAATGCTAG 462
Query 475 GAGGAGTCTCTTCAGGTTAGT--AGAATGAGTAGAAAAAGAACGGAAAATGGCAGTGAAT 532
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 463 GAGGAGTCTCTTCAGGTTAGTAGAGAATGAGTAGAAAAAGAACCGAAAATGGCAGTGAAT 522
Query 533 CAGGACCAGCCACTTCTCATGTTCCTGTGGATAGATTCGGGTTTCTCAAGCAAGAACATG 592
||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 523 CAGCACCAGTCACTTCTCATGTTCCCGTGGATAGATTCGGGTTTCTCAAGCAAGAACATG 582
Query 593 CCAA---TTCGCCTGAGCGTTTTAGCAAGTCTAAAACTACATCATCCACTGATCATGACA 649
||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 583 GCAATTCTTCGCCTGAGCGTTTTAGCAAGTCTAGAACTACATCATCCACTGACCATGACA 642
Query 650 GAGAGGAGAGAAAGGTGAGAAAATGGAGGAAGATGATTGGGGTTGGAGGGAGTGATTGGA 709
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 643 GAGAGGAGAGAAAGGTGAGAAAATGGAGGAAGATGATTGGGGTTGGAGGTAGTGATTGGA 702
Query 710 AGCATTATGTTAGGAGAAAACCTAATGTTGTCAGAAGGCGTATACGAAAAGGGATCCCTG 769
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 703 AGCATTATGTTAGGAGAAAACCTAATGTTGTCCGAAGGCGTATACGAAAAGGGATCCCTG 762
Query 770 ATTGCTTACGAGGTCTTGTTTGGCAGTTAATCTCAGGAAGTCGAGACCTTTTGCTTATGA 829
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 763 ATTGCTTAAGAGGTCTTGTTTGGCAGTTAATCTCAGGAAGTCGGGACCTTTTGCTTATGA 822
Query 830 ATCCTGGTGTTTATGAGCAATTGGTGATTTATGAAACATCTGCATCAGAGCTTGATATCA 889
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 823 ATCCTGGTGTTTATGAGCAATTGGTGATTTATGAAACATCGGCATCAGAGCTTGATATCA 882
Query 890 TTCGAGACATATCCCGTACTTTCCCATCACATGTTTTCTTTCAGAAGAGACATGGACCTG 949
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 883 TTCGAGACATATCCCGTACTTTCCCATCACATGTTTTCTTTCAGAAGAGACATGGACCCG 942
Query 950 GGCAAAGATCCTTGTACAATGTCCTTAAGGCATACTCAGTTTATGACAGAGATGTCGGAT 1009
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 943 GGCAAAGATCGTTGTACAATGTCCTTAAGGCGTACTCAGTTTATGACAGAGATGTTGGAT 1002
Query 1010 ATGTTCAGGGGATGGGGTTTATAGCCGGTTTGTTGCTTCTCTATATGAGCGAAGAAGATG 1069
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1003 ATGTTCAGGGGATGGGGTTTATAGCGGGTTTGTTGCTTCTGTATATGAGCGAAGAAGATG 1062
Query 1070 CCTTCTGGTTATTAGTTGCATTACTTAAAGGAGCTGTTCATGCTCCAATGGAAGGACTGT 1129
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1063 CGTTCTGGTTATTAGTTGCATTACTAAAAGGAGCTGTTCATGCTCCAATGGAAGGATTGT 1122
Query 1130 ATCATGCAGGGCTTCCCCTTGTACAGCAATACCTGTTTCAGTTAGAAAGCTTGGTAAAAG 1189
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 ATCACGCAGGGCTTCCTCTTGTACAGCAATACCTGTTTCAGTTAGAAAGCTTGGTAAAAG 1182
Query 1190 AGCTAATTCCGAAGCTCGGAGAACATTTTACTCAAGAAATGATTAATCCGAGTATGTATG 1249
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1183 AGCTAATTCCGAAGCTCGGAGAACATTTTACTCAAGAAATGATTACTCCAAGTATGTATG 1242
Query 1250 CAAGTCAATGGTTCATCACCGTCTTCTCATACTCATTTCCTTTCCCTTTGGCTCTACGGA 1309
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1243 CAAGTCAATGGTTCATCACCGTCTTCTCTTATTCATTTCCTTTCCCTTTGGCTCTACGGA 1302
Query 1310 TATGGGATGTGTTTCTCTCCGAGGGTGTTAAAATCGTGTTCAAAGTGGGCTTAGCATTGC 1369
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1303 TATGGGATGTGTTTCTCTCTGAGGGTGTTAAAATCGTGTTCAAAGTGAGCTTAGCATTGC 1362
Query 1370 TCAAGTATTGCCAAGATGAGTTGGTAAAGTTACCGTTTGAGAAACTAATACATGCTCTGA 1429
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1363 TGAAGTATTGCCAAGATGAGTTGGTAAAATTACCGTTTGAGAAACTAATACATGCTCTGA 1422
Query 1430 AAACTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCA 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1423 AAACTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACCCTATCA 1482
Query 1490 AGGTATCAAAGCGTTTGGAAGAACTGACACTGGAGTATCAGAAGACTAATGCCAAACCGG 1549
||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||
Sbjct 1483 AGGTATCAAAGCGTTTGGAAGAACTGAAACTGGAGTATGAGAAGAATAATGCCAAACCGG 1542
Query 1550 TTCAACCGTAGGAA---ATC-C-GGTTGGCAATAACCTGAACCAGAAGTTGGATTCGAAT 1604
|||||||||||||| | | |||||||||||||| ||| ||||||||||||||||||
Sbjct 1543 TTCAACCGTAGGAATGGAAAACTGGTTGGCAATAACCAGAAGCAGAAGTTGGATTCGAAT 1602
Query 1605 TCGTTTTCTCATC-TTATCTTTTCTTGTTGGAATATATTCTTTTTTCATCATATT-GTCA 1662
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1603 TCGTTTG-TCATCCTTATCTTTTCTTGTTGGAATATATTCTTTTTTCATCATATTTGTCA 1661
Query 1663 AGTTGGGTGGGAATTTCTTATCAGAAGCTCTCTGATTGTTTTTAGCAATTTCGTGGAAAA 1722
|||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct 1662 AGTTGGGTGGGAATTTCTGATCAGAAGCTCTCTCATTCTTTTTAGCAATTTCGTGGAAAT 1721
Query 1723 GAA 1725
|||
Sbjct 1722 GAA 1724
> Ahg488442 jgi|Araly1|488442|fgenesh2_kg.6__1576__AT5G15930.1
Length=1463
Score = 1027 bits (556), Expect = 0.0
Identities = 891/1049 (85%), Gaps = 37/1049 (4%)
Strand=Plus/Plus
Query 489 GGTTAG-TAGAAT-GAGTAGAAAAAGAACGGAAAATGG-CAGTGAATCAGGACCAG-CCA 544
|||||| || ||| ||| || ||| |||| ||| || ||||||| || |||||| ||
Sbjct 204 GGTTAGTTA-AATGGAG-AGGAAACGAAC---AAA-GGACAGTGAACCAAGACCAGTCC- 256
Query 545 CTTCT-CATGTTCCTGTGGATAGATTCGGGTTTCTCAAGCAAGAACATGCCAATTCGCCT 603
| ||| | ||| || || ||||||||||||||||| ||||| ||||||| |||||| |||
Sbjct 257 C-TCTACTTGTACCGGTTGATAGATTCGGGTTTCTGAAGCAGGAACATGGCAATTCTCCT 315
Query 604 GAGCGTTTTAGCAAGTCTAAAACTACATCATCCACTGATC-ATGAC-AGAGAGGAGAGAA 661
| ||||| | |||| || ||| | |||| | | | | | ||||| || |||||||| |
Sbjct 316 CAACGTTTCACCAAGACT-AAA-T-CATC-T--AGT-AACTATGACAAG-GAGGAGAG-A 366
Query 662 AG-GTGAGAAAATGGAGGAAGATGATTGGGGTTGGAGGGAGTGATTGGAAGCATTATGTT 720
|| || | ||||||||||||||||||||| ||| || ||||||||||||||||| |||
Sbjct 367 AGAGTAACAAAATGGAGGAAGATGATTGGAACTGGTGGTAGTGATTGGAAGCATTACGTT 426
Query 721 AGGAGAAAACCTAATGTTGTC-AGAAGGCGTATACGAAAAGGGATCCCTGATTGCTTACG 779
|| ||||||||| |||||||| || ||||| || ||||||||||||||||| |||||| |
Sbjct 427 AGAAGAAAACCTCATGTTGTCAAG-AGGCGGATTCGAAAAGGGATCCCTGACTGCTTAAG 485
Query 780 AGGTCTTGTTTGGCAGTTAATCTCAGGAAGTCGAGACCTTTTGCTTATGAATCCTGGTGT 839
||||| |||||||| || ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 486 GGGTCTCGTTTGGCAATTGATCTCTGGAAGTCGAGACCTTTTGCTTATGAATCCCGGTGT 545
Query 840 TTATGAGCAATTGGTGATTTATGAAACATCTGCATCAGAGCTTGATATCATTCGAGACAT 899
||||| |||| ||||||||||||| || || |||||||| || ||||||||||| || ||
Sbjct 546 TTATGTGCAACTGGTGATTTATGAGACGTCAGCATCAGAACTCGATATCATTCGGGATAT 605
Query 900 ATCCCGTACTTTCCCATCACATGTTTTCTTTCAGAAGAGACATGGACCTGGGCAAAGATC 959
||| |||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||
Sbjct 606 ATCTCGTACTTTCCCATCGCATGTTTTCTTCCAGAAGAGACATGGACCAGGCCAAAGATC 665
Query 960 CTTGTACAATGTCCTTAAGGCATACTCAGTTTATGACAGAGATGTCGGATATGTTCAGGG 1019
|| |||||||| || || |||||||| || |||||||||||||||||||||||||||||
Sbjct 666 ATTATACAATGTTCTAAAAGCATACTCTGTCTATGACAGAGATGTCGGATATGTTCAGGG 725
Query 1020 GATGGGGTTT-ATAGCCGGTTTGTTGCTTCTCTATATGAGCGAAGAAGATGCCTTCTGGT 1078
|||||| ||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 726 GATGGG-TTTCATAGCCGGTTTGTTGCTTCTTTATATGAGCGAAGAAGATGCATTCTGGT 784
Query 1079 TATTAGTTGCATTACTTAAAGGAGCTGTTCA-TGCTCCAATGGAAGGACTGTATCATGCA 1137
|||||||||||||||| |||||||||||||| | | ||||| |||||| ||||||| |||
Sbjct 785 TATTAGTTGCATTACTCAAAGGAGCTGTTCACTCC-CCAATAGAAGGATTGTATCAGGCA 843
Query 1138 GGGCTTCCCCTTGTACAGCAATACCTGTTTCAGTTAGAAA-GCTTGGTAAAAGAGCTAAT 1196
|||||||| ||||||||||| || ||||| ||||| || | ||| ||||| ||| |||||
Sbjct 844 GGGCTTCCTCTTGTACAGCAGTATCTGTTACAGTTCGATATGCT-GGTAAGAGAACTAAT 902
Query 1197 TCCGAAGCTCGGAGAACATTTTACTCAAGAAATGATTAATCCGAGTATGTATGCAAGTCA 1256
||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 903 GCCGAAACTAGGAGAACATTTCACTCAAGAAATGATCAATCCGAGTATGTATGCAAGTCA 962
Query 1257 ATGGTTCATCACCGTCTTCTCATACTCATTTCCTTTCCCTTTGGCTCTACGGATATGGGA 1316
||||||||| |||||||| || || ||||||||||||| || ||| ||||| || |||||
Sbjct 963 ATGGTTCATAACCGTCTTTTCGTATTCATTTCCTTTCCATTCGGCACTACGAATCTGGGA 1022
Query 1317 TGTGTTTCTCTCCGAGGGTGTTAAAATCGTGTTCAAAGTGGGCTTAGCATTGCTCAAGTA 1376
||||||||| | ||||||||||| |||||||||||||| || ||||| || | ||| |
Sbjct 1023 TGTGTTTCTAGCTGAGGGTGTTAAGATCGTGTTCAAAGTTGGTTTAGCGTTATTGAAGCA 1082
Query 1377 TTGCCAAGATGAGTTGGT-AAAGTTACCGTTTGAGAAACTAATACATGCTCTGAA-AACT 1434
|||||| ||||| ||| | ||| || || |||||| |||| || |||||||||| || |
Sbjct 1083 TTGCCATGATGATTTGTTGAAA-TTGCCATTTGAGGAACTCATGCATGCTCTGAGGAA-T 1140
Query 1435 TTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAGGTA 1494
||||| ||||| || ||| |||| ||||| ||||||||||||||||| || || ||||||
Sbjct 1141 TTCCCTGAAGATGCCATGGATCCTGATACTTTGCTTCCATTGGCTTATTCCATTAAGGTA 1200
Query 1495 TCAAAGCGTTTGGAAGAACTGACACTGGA 1523
|||||||||||||||||| ||| || |||
Sbjct 1201 TCAAAGCGTTTGGAAGAAATGAAACAGGA 1229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71228758150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5